Ecosyste.ms: Issues

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GitHub / Pranavkhade/PACKMAN issues and pull requests

#63 - Biological Assembly -- molecule.load_structure

Issue - State: open - Opened by Pranavkhade 5 months ago

#62 - Biological assemblies verified

Pull Request - State: closed - Opened by Pranavkhade 5 months ago

#61 - NumPy 2.0 np.mat to np.asmatrix change

Issue - State: closed - Opened by Pranavkhade 5 months ago - 2 comments

#60 - Some biological assemblies are not reading multiple examples.

Issue - State: closed - Opened by Pranavkhade 5 months ago - 1 comment

#59 - Add options to download biological assemblies

Issue - State: closed - Opened by Pranavkhade 5 months ago - 2 comments

#58 - Add 'typing_extensions' to the requirements in pip

Issue - State: closed - Opened by Pranavkhade 6 months ago - 1 comment

#56 - predict_hinge fix 1

Pull Request - State: closed - Opened by Pranavkhade 10 months ago

#55 - Documentation overhaul, minor fixes and API improvements

Pull Request - State: closed - Opened by Pranavkhade 10 months ago

#54 - documentation changes 1

Pull Request - State: closed - Opened by Pranavkhade about 1 year ago

#53 - GitHub Actions: Let's turn ruff green again

Pull Request - State: closed - Opened by cclauss about 1 year ago - 1 comment

#52 - Dev

Pull Request - State: closed - Opened by Pranavkhade about 1 year ago

#51 - rotation fix 1

Pull Request - State: closed - Opened by Pranavkhade over 1 year ago

#50 - rotation code fix 1

Issue - State: closed - Opened by Pranavkhade over 1 year ago

#49 - rotation component fixed

Pull Request - State: closed - Opened by Pranavkhade over 1 year ago - 1 comment

#48 - Always rotate the N-terminal

Issue - State: closed - Opened by Pranavkhade over 1 year ago - 1 comment

#47 - Merge changes from other branch through master

Pull Request - State: closed - Opened by Pranavkhade over 1 year ago

#46 - Update geometry.py

Pull Request - State: closed - Opened by Pranavkhade over 1 year ago

#44 - Packing Entropy server file format (Read if you do not see the results)

Issue - State: closed - Opened by cgseitz over 1 year ago - 4 comments

#43 - ruff --select=E711,E712 --fix .

Pull Request - State: closed - Opened by cclauss over 1 year ago - 1 comment

#42 - Letter code change key redundancy

Issue - State: closed - Opened by Pranavkhade over 1 year ago - 1 comment

#40 - Create a temporary GitHub Action to run nose2pytest

Pull Request - State: closed - Opened by cclauss over 1 year ago - 1 comment

#39 - GitHub Actions: Replace nose with pytest

Pull Request - State: closed - Opened by cclauss over 1 year ago - 1 comment

#38 - Nose2 is incompatible with Python >= 3.10

Issue - State: closed - Opened by cclauss over 1 year ago

#37 - get_sequence added.

Pull Request - State: closed - Opened by Pranavkhade over 1 year ago

#36 - Auth id fix

Pull Request - State: closed - Opened by Pranavkhade about 2 years ago

#35 - Long PDB / PDBx - MMCIF : unable to perform an analyze

Issue - State: closed - Opened by Kambeiz over 2 years ago - 3 comments

#34 - Eccentricity - Infinite lengths

Issue - State: closed - Opened by Simard302 over 2 years ago - 8 comments

#33 - load_hinge path does not allow for spaces

Issue - State: closed - Opened by Simard302 over 2 years ago - 2 comments

#32 - GNM

Pull Request - State: closed - Opened by Pranavkhade over 2 years ago
Labels: enhancement

#31 - Hdanm improvement

Pull Request - State: closed - Opened by Pranavkhade over 2 years ago

#30 - PDB to mmCIF conversion in hdANM is fixed.

Pull Request - State: closed - Opened by Pranavkhade over 2 years ago

#29 - Gui improvements

Pull Request - State: closed - Opened by Pranavkhade almost 3 years ago - 1 comment

#28 - Bond

Pull Request - State: closed - Opened by Pranavkhade about 3 years ago

#27 - DCI

Pull Request - State: closed - Opened by Pranavkhade about 3 years ago - 1 comment

#26 - Hinge fixes

Pull Request - State: closed - Opened by Pranavkhade over 3 years ago

#25 - new packing entropy model added.

Pull Request - State: closed - Opened by Pranavkhade over 3 years ago

#24 - DCI compatibility

Pull Request - State: closed - Opened by Pranavkhade over 3 years ago - 1 comment

#23 - Add hdanm cli

Pull Request - State: closed - Opened by njbooher over 3 years ago

#22 - More server fixes

Pull Request - State: closed - Opened by njbooher over 3 years ago

#21 - Log to logfile

Pull Request - State: closed - Opened by njbooher over 3 years ago

#20 - More server fixes

Pull Request - State: closed - Opened by njbooher over 3 years ago

#19 - More server fixes

Pull Request - State: closed - Opened by njbooher over 3 years ago - 4 comments

#18 - Entropy

Pull Request - State: closed - Opened by Pranavkhade over 3 years ago

#17 - Improved extrapolation

Pull Request - State: closed - Opened by Pranavkhade over 3 years ago - 1 comment

#15 - More utilities

Pull Request - State: closed - Opened by Pranavkhade almost 4 years ago - 1 comment

#14 - Multiprocessing

Pull Request - State: closed - Opened by Pranavkhade about 4 years ago - 1 comment

#13 - Python3 web server fixes

Pull Request - State: closed - Opened by njbooher about 4 years ago

#12 - PyPI push 1.2.0

Pull Request - State: closed - Opened by Pranavkhade about 4 years ago

#11 - Docs

Pull Request - State: closed - Opened by Pranavkhade about 4 years ago

#10 - Docs

Pull Request - State: closed - Opened by Pranavkhade about 4 years ago

#9 - alpha shape

Issue - State: closed - Opened by unverciftci over 4 years ago - 4 comments

#8 - Add readthedocs config

Pull Request - State: closed - Opened by njbooher over 4 years ago

#7 - Annotations

Pull Request - State: closed - Opened by Pranavkhade over 4 years ago

#6 - Compliance integration

Pull Request - State: closed - Opened by Pranavkhade almost 5 years ago

#5 - protein.py import numpy

Issue - State: closed - Opened by Pranavkhade almost 5 years ago - 1 comment

#4 - Scaffolding

Pull Request - State: closed - Opened by Pranavkhade almost 5 years ago

#3 - Domain dynamics

Pull Request - State: closed - Opened by Pranavkhade almost 5 years ago

#2 - Changes needed for server rollout

Pull Request - State: closed - Opened by njbooher over 5 years ago

#1 - Changes needed for server rollout

Pull Request - State: closed - Opened by baberlevi over 5 years ago