Ecosyste.ms: Issues

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GitHub / PolusAI/polus-plugins issues and pull requests

#498 - Updating hdbscan-clustering plugin

Pull Request - State: open - Opened by hamshkhawar 10 months ago

#497 - Update/binops

Pull Request - State: open - Opened by nishaq503 10 months ago

#496 - Added some git actions

Pull Request - State: open - Opened by nishaq503 10 months ago

#495 - Image dimension stacking

Pull Request - State: open - Opened by hamshkhawar 11 months ago - 1 comment

#494 - Final/image assembler

Pull Request - State: closed - Opened by agerardin 11 months ago - 1 comment

#493 - Rxiv plugin

Pull Request - State: open - Opened by hamshkhawar 11 months ago

#492 - Image Calculator: Updated to use bfio 2.3.3 and filepattern 2.0.4

Pull Request - State: closed - Opened by nishaq503 11 months ago - 1 comment

#491 - updated czi-extract-plugin

Pull Request - State: open - Opened by hamshkhawar 11 months ago

#490 - Update/nyxus arrow

Pull Request - State: closed - Opened by hamshkhawar 12 months ago

#489 - Basic FlatField Estimation Plugin: Updated dependencies

Pull Request - State: closed - Opened by nishaq503 12 months ago - 2 comments

#488 - Status of Polus Plugins

Issue - State: open - Opened by nishaq503 12 months ago
Labels: bug, feature

#487 - feat: added support for Pydantic V2

Pull Request - State: open - Opened by camilovelezr 12 months ago - 1 comment

#486 - Ome-Converter: Update to bfio v2.3.3 and filepattern v2.0.4

Pull Request - State: open - Opened by nishaq503 12 months ago

#485 - Scalable ome microjson

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago

#484 - Fixed and updated the pre-compute slide plugin

Pull Request - State: open - Opened by nishaq503 about 1 year ago

#483 - Better handling of strings for loading plugin manifests via remote and local paths

Issue - State: open - Opened by akisaini about 1 year ago
Labels: feature

#482 - Update/tabular overlay to use stitching vector to compute geometry coordinates

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago - 1 comment

#481 - Update/image assembler 1.4

Pull Request - State: open - Opened by agerardin about 1 year ago - 1 comment

#480 - Update/cell-border-segmentation plugin

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago - 1 comment

#479 - Plugin update: Image Assembler

Pull Request - State: closed - Opened by nishaq503 about 1 year ago - 1 comment

#478 - Microjson to ome plugin

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago

#477 - chore: added CLT pixel/feature/region eval

Pull Request - State: closed - Opened by camilovelezr about 1 year ago

#476 - style: removed 'Plugin' from name in pixel-segmentation-comparison

Pull Request - State: closed - Opened by camilovelezr about 1 year ago - 1 comment

#475 - chore: feature-evaluation CLT, json manifest fix

Pull Request - State: closed - Opened by camilovelezr about 1 year ago - 1 comment

#474 - Update/feature eval

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago

#473 - chore: pixel-segmentation-comparison CLT, json manifest fix

Pull Request - State: closed - Opened by camilovelezr about 1 year ago

#472 - chore: region-segmentation-comparison CLT, json manifest fix

Pull Request - State: closed - Opened by camilovelezr about 1 year ago

#471 - ome-to-microjson-plugin

Pull Request - State: closed - Opened by hamshkhawar about 1 year ago

#470 - Polus plugins : Fix how plugin names are generated

Issue - State: open - Opened by agerardin about 1 year ago
Labels: bug

#469 - Polus plugins : removing one or all plugins

Issue - State: open - Opened by agerardin about 1 year ago
Labels: feature

#468 - plugins using preadator will not run as container on osx

Issue - State: open - Opened by agerardin about 1 year ago
Labels: bug

#467 - WIC API

Issue - State: open - Opened by agerardin about 1 year ago
Labels: feature

#466 - WIC API

Issue - State: open - Opened by agerardin about 1 year ago
Labels: bug

#465 - Processing of subdirectories

Issue - State: open - Opened by agerardin about 1 year ago
Labels: feature

#464 - ome converter crashes randomly

Issue - State: open - Opened by agerardin about 1 year ago - 1 comment
Labels: bug

#463 - polus plugins : Improve error messages for end users

Issue - State: open - Opened by agerardin about 1 year ago
Labels: bug

#462 - polus plugins refresh() does not work as expected

Issue - State: open - Opened by agerardin about 1 year ago
Labels: bug

#461 - Update/precompute slide fp2

Pull Request - State: closed - Opened by agerardin about 1 year ago - 1 comment

#460 - New/image assembler plugin 1.4.0 dev0

Pull Request - State: closed - Opened by agerardin about 1 year ago

#458 - Render Microjson overlay plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#457 - Bbbc download

Pull Request - State: open - Opened by saketprem over 1 year ago

#456 - feat: improved version comparison

Pull Request - State: closed - Opened by camilovelezr over 1 year ago - 2 comments

#455 - Implement Preadator in ome-converter-plugin

Issue - State: open - Opened by hamshkhawar over 1 year ago

#454 - Plugin Updates: Precompute slide

Pull Request - State: closed - Opened by nishaq503 over 1 year ago - 2 comments

#453 - Bump scipy from 1.7.1 to 1.10.0 in /formats/polus-vector-converter-plugins/src

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#452 - Plugin: LUMoS Bleedthrough correction

Pull Request - State: closed - Opened by nishaq503 over 1 year ago

#451 - Plugin Update: Theia bleedthough estimation

Pull Request - State: open - Opened by nishaq503 over 1 year ago

#450 - Updates: Vector Converter Plugins

Pull Request - State: open - Opened by nishaq503 over 1 year ago - 2 comments

#449 - Updated pre-commit hooks and related dependencies

Pull Request - State: closed - Opened by nishaq503 over 1 year ago - 2 comments

#448 - Plugin Update: Image Calculator

Pull Request - State: closed - Opened by nishaq503 over 1 year ago

#447 - Fix/image assembler plugin v1.3.0 dev0

Pull Request - State: closed - Opened by agerardin over 1 year ago - 1 comment

#446 - update: update precompute slide plugin to new standard

Pull Request - State: closed - Opened by agerardin over 1 year ago - 1 comment

#445 - relax some Ruff rules

Issue - State: open - Opened by agerardin over 1 year ago
Labels: feature

#444 - Bump requests from 2.28.2 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#443 - Plugin update: apply-flatfield

Pull Request - State: open - Opened by nishaq503 over 1 year ago - 1 comment

#442 - Updated/k-mean clustering plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#441 - test: added tests

Pull Request - State: closed - Opened by camilovelezr over 1 year ago - 3 comments

#440 - Plugin update: basic-flatfield-estimation

Pull Request - State: closed - Opened by nishaq503 over 1 year ago - 1 comment

#439 - fix: fixed unexported load_config

Pull Request - State: closed - Opened by camilovelezr over 1 year ago

#438 - feat: added features to remove local copies of plugins

Pull Request - State: closed - Opened by camilovelezr over 1 year ago - 5 comments

#437 - Update/nyxus plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#434 - Update/mesmer training

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#433 - Updating Mesmer Inference Plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#432 - Update/file renaming

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago - 4 comments

#431 - Update/pixel-segmentation-comparison-plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#430 - Update/region-segmentation-comparison-plugin

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#429 - Refactor: Update rolling-ball-plugin to new plugin standards

Pull Request - State: open - Opened by agerardin over 1 year ago

#428 - update/image-assembler-plugin

Pull Request - State: closed - Opened by agerardin over 1 year ago - 2 comments

#427 - Update/tabular merger

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#426 - feat: added cwl methods

Pull Request - State: closed - Opened by camilovelezr over 1 year ago

#425 - Update/tabular converter

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#424 - feat: improved validation errors handling

Pull Request - State: closed - Opened by camilovelezr over 1 year ago - 1 comment

#423 - Render overlay plugin

Pull Request - State: open - Opened by bthoughton over 1 year ago

#422 - refactor: general refactoring

Pull Request - State: closed - Opened by camilovelezr over 1 year ago

#421 - Update/tabular arrow

Pull Request - State: open - Opened by hamshkhawar over 1 year ago

#420 - Update/arrow tabular

Pull Request - State: open - Opened by hamshkhawar over 1 year ago

#419 - Update/binops

Pull Request - State: open - Opened by Nicholas-Schaub over 1 year ago

#418 - Plugin update: roi-relabel

Pull Request - State: closed - Opened by nishaq503 over 1 year ago - 2 comments

#417 - Omeconverter

Pull Request - State: closed - Opened by hamshkhawar over 1 year ago

#416 - Update/montage

Pull Request - State: closed - Opened by Nicholas-Schaub over 1 year ago

#415 - Rearranged code, ignored errors

Pull Request - State: closed - Opened by Nicholas-Schaub almost 2 years ago

#414 - Fixed some typos. Added VERSION file. Added README to examples.

Pull Request - State: closed - Opened by nishaq503 almost 2 years ago

#413 - Plugin Standardization, Testing, and Bug-squashing

Issue - State: closed - Opened by nishaq503 almost 2 years ago - 1 comment
Labels: bug, feature, dependencies

#411 - Updated all plugins' containers on dockerhub

Pull Request - State: closed - Opened by nishaq503 almost 2 years ago

#410 - Image saving bug in smp-training plugin

Pull Request - State: closed - Opened by hamshkhawar almost 2 years ago

#409 - Binary operations docker container does not exit

Issue - State: open - Opened by bthoughton almost 2 years ago
Labels: bug

#408 - feat: improved version validation

Pull Request - State: closed - Opened by camilovelezr almost 2 years ago

#407 - fix: fixed installation issues

Pull Request - State: closed - Opened by camilovelezr almost 2 years ago

#406 - Bump numpy from 1.20.1 to 1.22.0 in /features/polus-feature-evaluation-plugin/src

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#405 - feat: updated wipp schema and fixed manifest generation

Pull Request - State: closed - Opened by camilovelezr almost 2 years ago

#404 - Bump wheel from 0.36.2 to 0.38.1 in /visualization/polus-precompute-volume-plugin/src

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#403 - Add `skipChecks` to CSV Merger Plugin

Pull Request - State: open - Opened by Nicholas-Schaub almost 2 years ago

#402 - tiledtiff-converter-plugin docker repo change

Pull Request - State: closed - Opened by bthoughton almost 2 years ago

#401 - Updated build and container repository

Pull Request - State: closed - Opened by Nicholas-Schaub almost 2 years ago

#400 - smp-training-plugin updates & docker repo change

Pull Request - State: closed - Opened by bthoughton almost 2 years ago

#399 - Z01 Plugin Update and Docker Repo Switch

Pull Request - State: closed - Opened by bthoughton almost 2 years ago