PolusAI/bfio issues and pull requests

#105 - bugfix: Reading multi-channel data in correct order

Pull Request - State: closed - Opened by sameeul about 1 month ago

#104 - Default autoselect backend is confusing

Issue - State: open - Opened by r2dliu about 1 month ago

#103 - Update macos-12 to macos-13

Pull Request - State: closed - Opened by JesseMckinzie about 2 months ago

#101 - update workflow python versions

Pull Request - State: closed - Opened by sameeul 4 months ago

#100 - V245

Pull Request - State: closed - Opened by sameeul 4 months ago

#99 - Add jgo cache location in Docker images

Pull Request - State: closed - Opened by sameeul 4 months ago

#98 - Update version to 2.4.4

Pull Request - State: closed - Opened by sameeul 4 months ago

#97 - Fix Big endian issue and other metadata calculation

Pull Request - State: closed - Opened by sameeul 4 months ago

#96 - V243

Pull Request - State: closed - Opened by sameeul 5 months ago

#95 - Make BioReader pickleable

Pull Request - State: closed - Opened by sameeul 6 months ago

#94 - Version bump

Pull Request - State: closed - Opened by sameeul 6 months ago

#93 - Enable test in Mac

Pull Request - State: closed - Opened by sameeul 6 months ago

#92 - Update BioWriter append functionality

Pull Request - State: closed - Opened by sameeul 6 months ago

#91 - Update zarr metadata files

Pull Request - State: closed - Opened by sameeul 6 months ago

#90 - version bump

Pull Request - State: closed - Opened by sameeul 6 months ago

#89 - Fix zarr metadata writing error

Pull Request - State: closed - Opened by sameeul 6 months ago

#88 - version bump

Pull Request - State: closed - Opened by sameeul 6 months ago

#87 - Add tensorstore zarr writer

Pull Request - State: closed - Opened by JesseMckinzie 6 months ago

#86 - Update docker containers to address singularity path issue for maven repo

Pull Request - State: closed - Opened by sameeul 7 months ago

#85 - CI: added action for testing *-tools

Pull Request - State: open - Opened by nishaq503 7 months ago

#84 - fix tifffile deprecation warning

Pull Request - State: closed - Opened by sameeul 8 months ago

#83 - Zarr support with tensorstore backend

Pull Request - State: closed - Opened by sameeul 8 months ago

#82 - CI: added action to test all tools

Pull Request - State: closed - Opened by nishaq503 8 months ago

#81 - Update to bioformats 7.3.0

Pull Request - State: closed - Opened by sameeul 9 months ago

#80 - Add tensorstore backend

Pull Request - State: closed - Opened by sameeul 10 months ago

#79 - fix max_worker mismatch

Pull Request - State: closed - Opened by sameeul 10 months ago

#78 - V236 - update version

Pull Request - State: closed - Opened by sameeul 12 months ago

#77 - V236 - update docs and bioformats version

Pull Request - State: closed - Opened by sameeul 12 months ago

#76 - Update rtd build

Pull Request - State: closed - Opened by sameeul 12 months ago

#75 - set o+rx permissions for HOME directory

Pull Request - State: closed - Opened by jfennick 12 months ago

#74 - Add rtd build files

Pull Request - State: closed - Opened by sameeul 12 months ago

#73 - Bump version: 2.3.4 → 2.3.5

Pull Request - State: closed - Opened by sameeul 12 months ago

#72 - Fix docker cwl

Pull Request - State: closed - Opened by sameeul 12 months ago

#71 - update docker workflow

Pull Request - State: closed - Opened by sameeul about 1 year ago

#70 - Update workflow for PyPI

Pull Request - State: closed - Opened by sameeul about 1 year ago

#69 - Bump version: 2.3.3 → 2.3.4

Pull Request - State: closed - Opened by sameeul about 1 year ago

#68 - update bioformats to 7.1.0

Pull Request - State: closed - Opened by sameeul about 1 year ago

#67 - Multiple CT slice support

Pull Request - State: closed - Opened by sameeul about 1 year ago

#66 - Multi-Resolution image support

Pull Request - State: closed - Opened by sameeul about 1 year ago

#65 - Replace labshare to PolusAI

Pull Request - State: closed - Opened by sameeul about 1 year ago

#64 - update readme

Pull Request - State: closed - Opened by sameeul about 1 year ago - 1 comment

#63 - V233

Pull Request - State: closed - Opened by sameeul about 1 year ago - 1 comment

#62 - Fix accessing indices that are not aligned with tile boundary

Pull Request - State: closed - Opened by sameeul about 1 year ago - 1 comment

#61 - update bioformats version

Pull Request - State: closed - Opened by sameeul about 1 year ago - 1 comment

#60 - Try mac M1

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#59 - Bump version: 2.3.1 → 2.3.2

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#58 - add support for v2.1.9 metadata

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#57 - Fix zarr check

Pull Request - State: closed - Opened by sameeul over 1 year ago

#56 - Fixing zarr backend check

Pull Request - State: closed - Opened by sameeul over 1 year ago

#55 - Update base docker

Pull Request - State: closed - Opened by sameeul over 1 year ago

#54 - Update docker

Pull Request - State: closed - Opened by sameeul over 1 year ago

#53 - Update docker

Pull Request - State: closed - Opened by sameeul over 1 year ago

#52 - Run unit tests on all 3 platforms

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#51 - Try scyjava

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#50 - File type deduction

Pull Request - State: closed - Opened by sameeul over 1 year ago - 1 comment

#49 - Pre commit

Pull Request - State: closed - Opened by jfennick over 1 year ago

#48 - Fix ome types and other bugs

Pull Request - State: closed - Opened by sameeul over 1 year ago

#47 - Update github workflow

Pull Request - State: closed - Opened by sameeul over 1 year ago

#46 - IndexError: list index out of range when no OMEXML found

Issue - State: closed - Opened by sameeul over 1 year ago

#45 - remove napari plugin

Pull Request - State: closed - Opened by sameeul over 1 year ago

#44 - Address TiffFrame subclassing issue

Pull Request - State: closed - Opened by sameeul over 1 year ago

#43 - v2.3.1

Pull Request - State: closed - Opened by Nicholas-Schaub over 1 year ago

#42 - TiffBytesOffsets incompatible with tifffile.TiffFrame after tifffile 2022.4.22

Issue - State: closed - Opened by BrianWhitneyAI over 1 year ago - 3 comments

#41 - Updated Metadata and Dependencies

Pull Request - State: closed - Opened by Nicholas-Schaub over 1 year ago

#40 - Update dev branch

Pull Request - State: closed - Opened by Nicholas-Schaub over 1 year ago

#39 - Outdated call to ome_types.from_xml

Issue - State: closed - Opened by anntzer almost 2 years ago - 1 comment

#38 - Exclude tests from packages

Pull Request - State: closed - Opened by jaimergp over 2 years ago - 1 comment

#37 - consider splitting napari plugin into new package?

Issue - State: closed - Opened by tlambert03 over 2 years ago - 2 comments

#36 - Bug: Warning for minimum tile_size not showing up

Issue - State: closed - Opened by hamshkhawar over 2 years ago

#35 - Bug: Creating a multi-channel tiff image from scratch.

Issue - State: closed - Opened by nishaq503 over 2 years ago - 5 comments

#34 - Bug: Setter for physical Pixel size does not obey pydantic model.

Issue - State: closed - Opened by nishaq503 almost 3 years ago