Ecosyste.ms: Issues

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GitHub / PolusAI/bfio issues and pull requests

#84 - fix tifffile deprecation warning

Pull Request - State: closed - Opened by sameeul 13 days ago

#83 - Zarr support with tensorstore backend

Pull Request - State: closed - Opened by sameeul about 1 month ago

#82 - CI: added action to test all tools

Pull Request - State: closed - Opened by nishaq503 about 1 month ago

#81 - Update to bioformats 7.3.0

Pull Request - State: closed - Opened by sameeul about 1 month ago

#80 - Add tensorstore backend

Pull Request - State: closed - Opened by sameeul 3 months ago

#79 - fix max_worker mismatch

Pull Request - State: closed - Opened by sameeul 3 months ago

#78 - V236 - update version

Pull Request - State: closed - Opened by sameeul 5 months ago

#77 - V236 - update docs and bioformats version

Pull Request - State: closed - Opened by sameeul 5 months ago

#76 - Update rtd build

Pull Request - State: closed - Opened by sameeul 5 months ago

#75 - set o+rx permissions for HOME directory

Pull Request - State: closed - Opened by jfennick 5 months ago

#74 - Add rtd build files

Pull Request - State: closed - Opened by sameeul 5 months ago

#73 - Bump version: 2.3.4 → 2.3.5

Pull Request - State: closed - Opened by sameeul 5 months ago

#72 - Fix docker cwl

Pull Request - State: closed - Opened by sameeul 5 months ago

#71 - update docker workflow

Pull Request - State: closed - Opened by sameeul 5 months ago

#70 - Update workflow for PyPI

Pull Request - State: closed - Opened by sameeul 5 months ago

#69 - Bump version: 2.3.3 → 2.3.4

Pull Request - State: closed - Opened by sameeul 5 months ago

#68 - update bioformats to 7.1.0

Pull Request - State: closed - Opened by sameeul 5 months ago

#67 - Multiple CT slice support

Pull Request - State: closed - Opened by sameeul 5 months ago

#66 - Multi-Resolution image support

Pull Request - State: closed - Opened by sameeul 5 months ago

#65 - Replace labshare to PolusAI

Pull Request - State: closed - Opened by sameeul 6 months ago

#64 - update readme

Pull Request - State: closed - Opened by sameeul 7 months ago - 1 comment

#63 - V233

Pull Request - State: closed - Opened by sameeul 7 months ago - 1 comment

#62 - Fix accessing indices that are not aligned with tile boundary

Pull Request - State: closed - Opened by sameeul 7 months ago - 1 comment

#61 - update bioformats version

Pull Request - State: closed - Opened by sameeul 8 months ago - 1 comment

#60 - Try mac M1

Pull Request - State: closed - Opened by sameeul 8 months ago - 1 comment

#59 - Bump version: 2.3.1 → 2.3.2

Pull Request - State: closed - Opened by sameeul 9 months ago - 1 comment

#58 - add support for v2.1.9 metadata

Pull Request - State: closed - Opened by sameeul 9 months ago - 1 comment

#57 - Fix zarr check

Pull Request - State: closed - Opened by sameeul 9 months ago

#56 - Fixing zarr backend check

Pull Request - State: closed - Opened by sameeul 9 months ago

#55 - Update base docker

Pull Request - State: closed - Opened by sameeul 9 months ago

#54 - Update docker

Pull Request - State: closed - Opened by sameeul 9 months ago

#53 - Update docker

Pull Request - State: closed - Opened by sameeul 9 months ago

#52 - Run unit tests on all 3 platforms

Pull Request - State: closed - Opened by sameeul 10 months ago - 1 comment

#51 - Try scyjava

Pull Request - State: closed - Opened by sameeul 10 months ago - 1 comment

#50 - File type deduction

Pull Request - State: closed - Opened by sameeul 10 months ago - 1 comment

#49 - Pre commit

Pull Request - State: closed - Opened by jfennick 10 months ago

#48 - Fix ome types and other bugs

Pull Request - State: closed - Opened by sameeul 10 months ago

#47 - Update github workflow

Pull Request - State: closed - Opened by sameeul 11 months ago

#46 - IndexError: list index out of range when no OMEXML found

Issue - State: closed - Opened by sameeul 11 months ago

#45 - remove napari plugin

Pull Request - State: closed - Opened by sameeul 11 months ago

#44 - Address TiffFrame subclassing issue

Pull Request - State: closed - Opened by sameeul 11 months ago

#43 - v2.3.1

Pull Request - State: closed - Opened by Nicholas-Schaub 11 months ago

#41 - Updated Metadata and Dependencies

Pull Request - State: closed - Opened by Nicholas-Schaub about 1 year ago

#40 - Update dev branch

Pull Request - State: closed - Opened by Nicholas-Schaub about 1 year ago

#39 - Outdated call to ome_types.from_xml

Issue - State: closed - Opened by anntzer over 1 year ago - 1 comment

#38 - Exclude tests from packages

Pull Request - State: closed - Opened by jaimergp almost 2 years ago - 1 comment

#37 - consider splitting napari plugin into new package?

Issue - State: closed - Opened by tlambert03 almost 2 years ago - 2 comments

#36 - Bug: Warning for minimum tile_size not showing up

Issue - State: closed - Opened by hamshkhawar about 2 years ago

#35 - Bug: Creating a multi-channel tiff image from scratch.

Issue - State: closed - Opened by nishaq503 about 2 years ago - 5 comments

#33 - Bug: Setter for channel name is missing a `zip`.

Issue - State: closed - Opened by nishaq503 about 2 years ago

#32 - Dev

Pull Request - State: closed - Opened by Nicholas-Schaub about 2 years ago

#31 - Update/docs

Pull Request - State: closed - Opened by Nicholas-Schaub about 2 years ago

#30 - Bioformats

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago - 1 comment

#29 - Feat/biowriter: Scalability and Extended Writing Ability

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#28 - Feat/bioreader

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#27 - Fix/biowriter

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#26 - Fix/rgb

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#25 - v2.2.0 Release Candidate

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#24 - Fix/metadata

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#23 - Feat/ometypes

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#22 - Feat/ci

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago - 1 comment

#20 - Upgrade/bioformats

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago

#19 - Requirements versus PyImageJ, python-bioformats, AICSImageIO

Issue - State: closed - Opened by ctrueden over 2 years ago - 6 comments

#18 - Migration away from log4j

Issue - State: closed - Opened by joshmoore over 2 years ago

#17 - Setup new repo for Napari

Issue - State: closed - Opened by Nicholas-Schaub over 2 years ago - 1 comment

#16 - Update metadata in setup.py

Issue - State: closed - Opened by Nicholas-Schaub over 2 years ago

#15 - Upgrade BioFormats Jar (6.6.0 -> 6.7.0)

Issue - State: closed - Opened by Nicholas-Schaub over 2 years ago - 1 comment

#14 - Add git actions

Issue - State: closed - Opened by Nicholas-Schaub over 2 years ago

#13 - Update bump2version

Issue - State: closed - Opened by Nicholas-Schaub over 2 years ago - 1 comment

#11 - Selection of image series or sub-resolutions by bioformats backend?

Issue - State: closed - Opened by NHPatterson almost 3 years ago - 1 comment

#10 - Zeiss CZI interleaved RGB images do not read as expected

Issue - State: closed - Opened by NHPatterson almost 3 years ago - 4 comments

#9 - Dev

Pull Request - State: closed - Opened by Nicholas-Schaub almost 3 years ago

#8 - Add Github Actions to Autobuild and tag releases.

Issue - State: closed - Opened by Nicholas-Schaub almost 3 years ago

#7 - Updates to Dockerfile

Pull Request - State: closed - Opened by Nicholas-Schaub about 3 years ago

#6 - Dev

Pull Request - State: closed - Opened by Nicholas-Schaub about 3 years ago

#5 - Missing documentation for napari support

Issue - State: closed - Opened by gauharbains about 3 years ago - 1 comment

#4 - bfio.BioWriter Instantiation of nd.array

Issue - State: closed - Opened by bthoughton about 3 years ago

#3 - Fixed zarr metadata read, minimal xml, and backend autoselect

Pull Request - State: closed - Opened by Nicholas-Schaub about 3 years ago

#2 - BFIO 2.1

Pull Request - State: closed - Opened by Nicholas-Schaub about 3 years ago - 1 comment

#1 - Cannot Load Compressed Strips

Issue - State: closed - Opened by mmvih about 3 years ago - 1 comment