Ecosyste.ms: Issues

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GitHub / PoisotLab/NCBITaxonomy.jl issues and pull requests

#57 - Performance improvements with smarter handling of raw data

Pull Request - State: open - Opened by tpoisot over 1 year ago - 2 comments

#56 - Additional tests on distance matrix

Pull Request - State: closed - Opened by tpoisot over 1 year ago - 2 comments

#55 - RegEx search

Issue - State: open - Opened by tpoisot over 1 year ago
Labels: enhancement, need-triage

#53 - Update the documentation

Pull Request - State: closed - Opened by tpoisot over 1 year ago - 1 comment

#52 - Replace lineage functions by AbstractTrees interface

Pull Request - State: closed - Opened by tpoisot over 1 year ago

#51 - Add onlysynonyms and rank to similarnames

Pull Request - State: closed - Opened by tpoisot over 1 year ago

#50 - :wrench: update link to documentation

Pull Request - State: closed - Opened by gabrieldansereau almost 2 years ago

#49 - Issue with lowercase search conflicting with vernaculars

Issue - State: closed - Opened by tpoisot over 2 years ago - 1 comment
Labels: need-triage

#48 - CompatHelper: bump compat for "Arrow" to "2.2"

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#47 - CompatHelper: bump compat for "Arrow" to "2.1"

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#46 - CompatHelper: bump compat for "Arrow" to "2.0"

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#45 - CompatHelper: bump compat for "StringDistances" to "0.11"

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#44 - [out there] processing taxon identifiers via NLP

Issue - State: closed - Opened by gottacatchenall about 3 years ago - 1 comment
Labels: enhancement, need-triage

#43 - Function to disambiguate names

Issue - State: closed - Opened by tpoisot about 3 years ago - 1 comment
Labels: enhancement

#42 - Add a function to get the nearest names

Pull Request - State: closed - Opened by tpoisot about 3 years ago - 1 comment

#41 - Doc/hotfix

Pull Request - State: closed - Opened by tpoisot about 3 years ago - 1 comment

#40 - In-part / non-unique names

Pull Request - State: closed - Opened by tpoisot about 3 years ago - 3 comments

#39 - In-part names only return the first element

Issue - State: closed - Opened by tpoisot about 3 years ago - 2 comments
Labels: bug, need-triage

#38 - Citing NCBITaxonomy.jl

Issue - State: closed - Opened by Rekyt over 3 years ago - 4 comments
Labels: question

#37 - pathogen.jl extended to also return species ranks where different than matched names

Issue - State: closed - Opened by cjcarlson over 3 years ago - 1 comment
Labels: enhancement, need-triage

#36 - > 50% of queries are returning NA; and, separately, exact matches aren't returning where appropriate

Issue - State: closed - Opened by cjcarlson over 3 years ago - 3 comments
Labels: unreplicable

#35 - CompatHelper: bump compat for "DataFrames" to "1.0"

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago

#33 - Use a central location for the taxonomy and default to PKG if not set

Issue - State: closed - Opened by tpoisot over 3 years ago - 1 comment
Labels: enhancement

#32 - Taxonomic tree

Issue - State: closed - Opened by diegozea over 3 years ago - 5 comments
Labels: documentation

#31 - Use Preferences.jl to store a single taxo db

Issue - State: closed - Opened by tpoisot over 3 years ago
Labels: enhancement, need-triage

#30 - Performance improvements

Pull Request - State: closed - Opened by tpoisot over 3 years ago

#29 - New divisions

Issue - State: closed - Opened by tpoisot over 3 years ago
Labels: enhancement

#28 - Improve synonyms functions

Pull Request - State: closed - Opened by tpoisot over 3 years ago - 1 comment

#27 - Use Scratch.jl

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement, breaking

#26 - ✨ vernacular names

Pull Request - State: closed - Opened by tpoisot almost 4 years ago

#24 - Add a freshness parameter

Pull Request - State: closed - Opened by tpoisot almost 4 years ago - 1 comment

#23 - Add a freshness parameter

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: need-triage

#22 - Add standard namefinders

Pull Request - State: closed - Opened by tpoisot almost 4 years ago - 1 comment

#21 - Standard namefinders

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement, in-progress

#20 - Return the nearest names

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement

#19 - Allow arbitrary distance function

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement, in-progress

#18 - Closes #15

Pull Request - State: closed - Opened by tpoisot almost 4 years ago

#17 - CompatHelper: bump compat for "Arrow" to "1.0"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#16 - TagBot trigger issue

Issue - State: closed - Opened by JuliaTagBot almost 4 years ago - 33 comments

#15 - Create a namefinder from a list of IDs

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement

#14 - Next version

Pull Request - State: closed - Opened by tpoisot almost 4 years ago - 1 comment

#13 - Add parents and rank

Pull Request - State: closed - Opened by tpoisot almost 4 years ago - 1 comment

#12 - Documentation update for the next release

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: documentation, enhancement

#11 - rank function for a taxonomic ID

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: enhancement, in-progress

#10 - Improve the performance of children and descendants

Pull Request - State: closed - Opened by tpoisot almost 4 years ago - 1 comment
Labels: performance

#9 - CompatHelper: add new compat entry for "Tar" at version "1.8"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#8 - CompatHelper: bump compat for "DataFrames" to "0.22"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#7 - CompatHelper: add new compat entry for "MD5" at version "0.2"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#6 - CompatHelper: add new compat entry for "Arrow" at version "0.4"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#5 - CompatHelper: add new compat entry for "GZip" at version "0.5"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#3 - CompatHelper: add new compat entry for "Tar" at version "1.8"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago

#1 - The unique name title is not populated when reading to the names.arrow file

Issue - State: closed - Opened by tpoisot almost 4 years ago
Labels: bug