PixelgenTechnologies/pixelator issues and pull requests

#205 - Exe 2084 bug in local g

Pull Request - State: closed - Opened by johandahlberg 2 months ago

#204 - save() crashes after simple_aggregate()

Issue - State: open - Opened by EitanGronich 2 months ago - 3 comments

#203 - Release 0.19.0

Pull Request - State: closed - Opened by ambarrio 2 months ago

#202 - fix: changelog

Pull Request - State: closed - Opened by ambarrio 2 months ago

#201 - Feature/exe 2065 set hard cutoff on min size

Pull Request - State: closed - Opened by johandahlberg 2 months ago - 1 comment

#200 - Feature/exe 2075 fail if hard and dynamic size limits are both set

Pull Request - State: closed - Opened by johandahlberg 2 months ago

#199 - Feature/exe 2054 bail early on bad demux

Pull Request - State: closed - Opened by johandahlberg 3 months ago

#198 - Better error message when there are fewer nodes than the number of dimensions in pmds layout

Pull Request - State: closed - Opened by johandahlberg 3 months ago

#197 - Fixing the error output for calling pixel graph function with non-existing component name

Pull Request - State: closed - Opened by ptajvar 4 months ago

#196 - Improve cli start-up speed

Pull Request - State: closed - Opened by johandahlberg 4 months ago

#195 - Add "depth" column to the discarded_edgelist

Pull Request - State: closed - Opened by ptajvar 4 months ago

#194 - Update fspec, and update lock file

Pull Request - State: closed - Opened by johandahlberg 4 months ago

#193 - Adding annotation of potential doublets to anndata obs

Pull Request - State: closed - Opened by ptajvar 4 months ago

#192 - removing components_modularity from edgelist_metrics

Pull Request - State: closed - Opened by ptajvar 5 months ago

#191 - Release 0.18.3

Pull Request - State: closed - Opened by ambarrio 5 months ago

#190 - Release 0.18.3

Pull Request - State: closed - Opened by ambarrio 5 months ago

#189 - fix: unusually large multi-target polarity plot

Pull Request - State: closed - Opened by ptajvar 5 months ago

#188 - Feature/exe 1989 iterative leiden

Pull Request - State: closed - Opened by ptajvar 5 months ago

#187 - Relax pyarrow dependency to >=14

Pull Request - State: closed - Opened by fbdtemme 5 months ago

#186 - Updated probability distance calculations

Pull Request - State: closed - Opened by ludvigla 6 months ago

#185 - Added plot_polarity_diff_volcano

Pull Request - State: closed - Opened by ptajvar 6 months ago

#184 - Fix running tests with tox and rework testing workflow

Pull Request - State: closed - Opened by fbdtemme 6 months ago

#183 - add support for multiple targets in differential colocalization

Pull Request - State: closed - Opened by ptajvar 6 months ago

#182 - Add support for command group aliases

Pull Request - State: closed - Opened by fbdtemme 6 months ago - 4 comments

#181 - Chore/update ruff and fix issues

Pull Request - State: closed - Opened by johandahlberg 6 months ago - 1 comment

#180 - Fix some typos and tweak development Dockerfile

Pull Request - State: closed - Opened by fbdtemme 6 months ago - 1 comment

#179 - Added abundance_colocalization_plot function

Pull Request - State: closed - Opened by ptajvar 6 months ago - 1 comment

#178 - Fix layout aggregation memory usage

Pull Request - State: closed - Opened by johandahlberg 6 months ago - 1 comment

#177 - Fix local development container builds running with PYTHONNOUSERSITE on AWS

Pull Request - State: closed - Opened by fbdtemme 7 months ago

#176 - Feature/exe 1884 make community detection deterministic

Pull Request - State: closed - Opened by ptajvar 7 months ago - 2 comments

#175 - fix: citations to the nat methods paper in the repo

Pull Request - State: closed - Opened by ambarrio 7 months ago

#174 - Release 0.18.2

Pull Request - State: closed - Opened by johandahlberg 7 months ago - 1 comment

#173 - Update to qc report 0.14.2

Pull Request - State: closed - Opened by fbdtemme 7 months ago - 1 comment

#172 - Feature/exe 1873 update polars to 1.x series

Pull Request - State: closed - Opened by johandahlberg 7 months ago - 1 comment

#171 - Update poetry.lock

Pull Request - State: closed - Opened by johandahlberg 7 months ago

#170 - Release 0.18.1

Pull Request - State: closed - Opened by ambarrio 7 months ago - 1 comment

#169 - feat: add changelog message

Pull Request - State: closed - Opened by ambarrio 7 months ago

#168 - Allow wider version range for umi tools

Pull Request - State: closed - Opened by johandahlberg 7 months ago - 1 comment

#167 - Release 0.18.0

Pull Request - State: closed - Opened by ambarrio 7 months ago - 1 comment

#166 - Release 0.18.0

Pull Request - State: closed - Opened by ambarrio 7 months ago - 1 comment

#165 - Release 0.18 prep

Pull Request - State: closed - Opened by ambarrio 7 months ago

#164 - Feature/exe 1803

Pull Request - State: closed - Opened by ambarrio 7 months ago - 1 comment

#163 - Fix syntax error in container build action

Pull Request - State: closed - Opened by fbdtemme 7 months ago

#162 - Wrap edgelists with domain object

Pull Request - State: closed - Opened by johandahlberg 7 months ago - 1 comment

#161 - ci: fix pixelator container version on tag push

Pull Request - State: closed - Opened by fbdtemme 7 months ago

#160 - Split pixelator.plot into modules

Pull Request - State: closed - Opened by ptajvar 8 months ago - 1 comment

#159 - fix: bug in compute_transition_probabilities

Pull Request - State: closed - Opened by ludvigla 8 months ago - 2 comments

#158 - Fix bug in aggregating precomputed layouts

Pull Request - State: closed - Opened by johandahlberg 8 months ago - 1 comment

#157 - Update report template to 0.14.1

Pull Request - State: closed - Opened by fbdtemme 8 months ago - 1 comment

#156 - rate-diff default transformation in colocalization

Pull Request - State: closed - Opened by johandahlberg 8 months ago - 1 comment

#155 - Allow plugin commands in qc report Parameters section

Pull Request - State: closed - Opened by fbdtemme 8 months ago - 1 comment

#154 - Update report to 0.14.0

Pull Request - State: closed - Opened by fbdtemme 8 months ago - 1 comment

#153 - Added density_scatter_plot

Pull Request - State: closed - Opened by ptajvar 8 months ago - 1 comment

#152 - Add panel aliases, add a v2 placeholder panel

Pull Request - State: closed - Opened by fbdtemme 8 months ago - 1 comment

#151 - Implement low-count marker removal in pixelator colocalizaiton

Pull Request - State: closed - Opened by ptajvar 8 months ago - 1 comment

#150 - Feature/exe 1476 precom layouts for plots

Pull Request - State: closed - Opened by ptajvar 8 months ago - 1 comment

#149 - Weighted pMDS - Feature/exe-1782

Pull Request - State: closed - Opened by ludvigla 8 months ago - 10 comments

#148 - Handle when child process is killed by OOM killer

Pull Request - State: closed - Opened by johandahlberg 9 months ago - 1 comment

#147 - Feature/exe 1769 dsb implementation

Pull Request - State: closed - Opened by ptajvar 9 months ago - 1 comment

#146 - fix a bug where `a_pixels_per_b_pixel` stats where equal to the`b_pixels_per_a_pixel` stats

Pull Request - State: closed - Opened by fbdtemme 9 months ago - 1 comment

#145 - Release 0.17.1

Pull Request - State: closed - Opened by johandahlberg 9 months ago - 1 comment

#144 - Changelog for 0.17.1

Pull Request - State: closed - Opened by johandahlberg 9 months ago

#143 - Fix write performance for many small layouts

Pull Request - State: closed - Opened by johandahlberg 9 months ago - 1 comment

#142 - Release 0.17.0

Pull Request - State: closed - Opened by johandahlberg 9 months ago - 1 comment

#141 - Prepare change log for release of 0.17.0

Pull Request - State: closed - Opened by johandahlberg 9 months ago

#140 - explicitly check marker value expressions to be greater than zero bef…

Pull Request - State: closed - Opened by ptajvar 9 months ago - 1 comment

#139 - Feature/exe 1677

Pull Request - State: closed - Opened by ludvigla 9 months ago - 1 comment

#138 - Adding the rate_diff_transformation function.

Pull Request - State: closed - Opened by ptajvar 9 months ago - 1 comment

#137 - feat: unpin polars and update to 0.20.24

Pull Request - State: closed - Opened by fbdtemme 10 months ago - 1 comment