PierreBarrat/TreeTools.jl issues and pull requests

#50 - add simple_shapes.jl

Pull Request - State: closed - Opened by PierreBarrat 5 months ago

#49 - Rooting from model

Pull Request - State: closed - Opened by PierreBarrat 8 months ago

#48 - Fix variable reference error in `write_newick` method

Pull Request - State: closed - Opened by huddlej 9 months ago - 2 comments

#47 - Implement copy methods for TreeNodeData

Pull Request - State: closed - Opened by PierreBarrat about 1 year ago

#46 - add new convert method, with directly TreeNodeData as first argument

Pull Request - State: closed - Opened by PierreBarrat about 1 year ago

#45 - Add isinternal method

Pull Request - State: closed - Opened by PierreBarrat about 1 year ago

#44 - fixes #43: display error for tree with one leaf

Pull Request - State: closed - Opened by PierreBarrat about 1 year ago

#43 - Display faills when node has a singular child

Issue - State: closed - Opened by mushunrek about 1 year ago - 1 comment

#42 - fixes #41 : midpoint rooting fails

Pull Request - State: closed - Opened by PierreBarrat about 1 year ago

#41 - midpoint rooting fails

Issue - State: closed - Opened by mmolari about 1 year ago - 2 comments

#40 - TreeKnit is failing with new TreeTools master branch

Issue - State: closed - Opened by anna-parker almost 2 years ago - 1 comment

#39 - Documentation

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#38 - Dev/reorganize prune graft

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#37 - `TreeNode(tau = 1)` fails

Issue - State: closed - Opened by PierreBarrat almost 2 years ago

#36 - add method to write multiple trees to the same Newick file

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#35 - add two methods for trees: `distance(::Tree, ::Tree)` and `resolution_index(::Tree)`

Pull Request - State: closed - Opened by anna-parker almost 2 years ago - 2 comments

#34 - tree display failing in simple example

Issue - State: closed - Opened by PierreBarrat almost 2 years ago

#33 - Documentation

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#32 - Functions for pangraph

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#31 - Reorganize write functions

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#30 - Functions for pangraph

Pull Request - State: closed - Opened by PierreBarrat almost 2 years ago

#29 - Sort nodes in alphabetical order if same rank in mcc

Pull Request - State: closed - Opened by anna-parker about 2 years ago

#28 - Feat/readin tree w treename

Pull Request - State: closed - Opened by anna-parker about 2 years ago

#27 - add branches_in_spanning_tree

Pull Request - State: closed - Opened by PierreBarrat about 2 years ago - 1 comment

#26 - add possibilty to copy label in copy function, fix bug in delete_null…

Pull Request - State: closed - Opened by anna-parker about 2 years ago - 1 comment

#25 - add label field for Tree objects

Pull Request - State: closed - Opened by PierreBarrat about 2 years ago

#24 - Reading multi-line Newick files

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#23 - remove unused functions - better show for TreeNode

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago - 1 comment

#22 - add children/ancestor/branch_length methods for TreeNode

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#21 - rename `divtime` to `distance`

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago - 1 comment

#20 - rename `divtime` to `distance`

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#19 - Rename `divtime` to `distance`

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#18 - Revert "Rename `divtime` to `distance`"

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#17 - Rename `divtime` to `distance`

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#16 - works better with arrays/dicts

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago - 1 comment

#15 - isleaf/isroot functions for splits

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#14 - Better misc data

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#13 - copy now deepcopies the node data

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#12 - fix print_tree_ascii bug on empty node add print_test function

Pull Request - State: closed - Opened by anna-parker over 2 years ago

#11 - Add randstring to numeric labels w less than 3 digits

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#10 - Methods `in` and `getindex` for `Tree`

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago - 1 comment

#9 - add documentation to delete_node!

Pull Request - State: closed - Opened by anna-parker over 2 years ago

#8 - add print_tree_ascii function to TreeTools

Pull Request - State: closed - Opened by anna-parker over 2 years ago - 3 comments

#7 - Change behavior of copy function

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#6 - Fix/write node order

Pull Request - State: closed - Opened by PierreBarrat over 2 years ago

#5 - TagBot trigger issue

Issue - State: closed - Opened by JuliaTagBot almost 3 years ago - 31 comments

#4 - add branch length to root node in newick string

Pull Request - State: closed - Opened by PierreBarrat almost 3 years ago

#3 - Add ladderize! function

Pull Request - State: closed - Opened by PierreBarrat almost 3 years ago

#2 - add ladderize

Pull Request - State: closed - Opened by PierreBarrat almost 3 years ago

#1 - Add branch length to root node when writing Newick string

Pull Request - State: closed - Opened by PierreBarrat almost 3 years ago

GitHub / PierreBarrat/TreeTools.jl issues and pull requests