Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PennLINC/qsiprep issues and pull requests

#512 - Has anybody found a way to install QSIPrep-Docker on Mac / ARM?

Issue - State: open - Opened by Jmharoon1 almost 2 years ago - 2 comments

#511 - "the input device is not a TTY"

Issue - State: closed - Opened by weberam2 almost 2 years ago - 2 comments

#511 - "the input device is not a TTY"

Issue - State: closed - Opened by weberam2 almost 2 years ago - 2 comments

#510 - calculate network controllability

Issue - State: open - Opened by pinghongyeh almost 2 years ago - 1 comment

#510 - calculate network controllability

Issue - State: open - Opened by pinghongyeh almost 2 years ago - 1 comment

#509 - Import errors

Issue - State: closed - Opened by araikes almost 2 years ago - 3 comments

#509 - Import errors

Issue - State: closed - Opened by araikes almost 2 years ago - 3 comments

#508 - Baby tractography

Issue - State: open - Opened by arokem almost 2 years ago - 5 comments

#508 - Baby tractography

Issue - State: open - Opened by arokem almost 2 years ago - 5 comments

#507 - Shoreline with tensor model

Issue - State: closed - Opened by nseider almost 2 years ago - 1 comment

#507 - Shoreline with tensor model

Issue - State: closed - Opened by nseider almost 2 years ago - 1 comment

#506 - DOC: paste error in file descriptions

Pull Request - State: closed - Opened by cookpa almost 2 years ago

#506 - DOC: paste error in file descriptions

Pull Request - State: closed - Opened by cookpa almost 2 years ago

#505 - qsiprep suddenly stops without an error message during preprocessing

Issue - State: open - Opened by jroy4 almost 2 years ago - 7 comments

#503 - Exception: Gradients or original files don't match. File a bug report!

Issue - State: open - Opened by gsudre almost 2 years ago - 18 comments

#503 - Exception: Gradients or original files don't match. File a bug report!

Issue - State: open - Opened by gsudre almost 2 years ago - 18 comments

#502 - QSIprep crash then hang

Issue - State: open - Opened by Amcka almost 2 years ago

#502 - QSIprep crash then hang

Issue - State: open - Opened by Amcka almost 2 years ago

#501 - [ENH] Ingress UKB Data

Issue - State: closed - Opened by mattcieslak almost 2 years ago

#498 - [WIP] ENH: 482 remove fsl dependency

Pull Request - State: closed - Opened by jbh1091 almost 2 years ago - 13 comments

#497 - Patch2Self and needed Resolution

Issue - State: closed - Opened by lizannea almost 2 years ago - 7 comments

#497 - Patch2Self and needed Resolution

Issue - State: closed - Opened by lizannea almost 2 years ago - 7 comments

#496 - DOC: Debug RTD build

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 3 comments

#496 - DOC: Debug RTD build

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 3 comments

#495 - FOD images being zero/negative?

Issue - State: open - Opened by dyhan316 almost 2 years ago

#495 - FOD images being zero/negative?

Issue - State: open - Opened by dyhan316 almost 2 years ago

#494 - Is there a way to skip dwi FSL preprocessing completely?

Issue - State: closed - Opened by dyhan316 about 2 years ago - 1 comment

#494 - Is there a way to skip dwi FSL preprocessing completely?

Issue - State: closed - Opened by dyhan316 about 2 years ago - 1 comment

#493 - Distortion correction with blip

Issue - State: closed - Opened by syunchoi about 2 years ago - 3 comments

#493 - Distortion correction with blip

Issue - State: open - Opened by syunchoi about 2 years ago - 3 comments

#492 - Removing bad volumes prior to preprocessing

Issue - State: closed - Opened by CaitlinLloyd about 2 years ago - 1 comment

#492 - Removing bad volumes prior to preprocessing

Issue - State: closed - Opened by CaitlinLloyd about 2 years ago - 1 comment

#491 - [ENH] Add a summary of the important imaging parameters found in input data

Issue - State: open - Opened by mattcieslak about 2 years ago - 2 comments

#491 - [ENH] Add a summary of the important imaging parameters found in input data

Issue - State: open - Opened by mattcieslak about 2 years ago - 2 comments

#490 - [ENH] Add "Gibbs" from TORTOISE

Pull Request - State: closed - Opened by mattcieslak about 2 years ago

#490 - [ENH] Add "Gibbs" from TORTOISE

Pull Request - State: closed - Opened by mattcieslak about 2 years ago

#489 - mtnormalize : tissue balance factors : -nan -nan -nan error.

Issue - State: closed - Opened by dyhan316 about 2 years ago - 2 comments

#489 - mtnormalize : tissue balance factors : -nan -nan -nan error.

Issue - State: closed - Opened by dyhan316 about 2 years ago - 3 comments

#488 - [ENH] Add partial fourier Unringing method

Issue - State: closed - Opened by mattcieslak about 2 years ago

#486 - add text for citing the paper and the zenodo in the boilerplate of the preps

Issue - State: closed - Opened by mattcieslak about 2 years ago - 1 comment

#483 - dev document might need updating

Issue - State: closed - Opened by mb3152 about 2 years ago - 2 comments
Labels: documentation

#482 - FSL dependency

Issue - State: closed - Opened by mb3152 about 2 years ago - 18 comments

#481 - [ENH] Add SynthStrip

Pull Request - State: closed - Opened by mattcieslak about 2 years ago

#481 - [ENH] Add SynthStrip

Pull Request - State: closed - Opened by mattcieslak about 2 years ago

#480 - bvecs , fsl and dipy

Issue - State: closed - Opened by kodiweera about 2 years ago - 1 comment

#475 - can't start qsiprep on ubuntu

Issue - State: closed - Opened by gcetin99 about 2 years ago - 1 comment

#472 - error with eddy (open_mp or cuda)

Issue - State: closed - Opened by julfou81 about 2 years ago - 5 comments

#471 - Reconstruction workflow for longitudinal data

Issue - State: closed - Opened by csleo95 about 2 years ago - 10 comments

#471 - Reconstruction workflow for longitudinal data

Issue - State: open - Opened by csleo95 about 2 years ago - 10 comments

#466 - Error: unrecognized arguments --custom-atlases

Issue - State: closed - Opened by Sheeya-Dong about 2 years ago - 6 comments

#462 - [BUG] PRELUDE and FUGUE are missing in 0.16 containers

Issue - State: closed - Opened by mattcieslak about 2 years ago - 1 comment

#462 - [BUG] PRELUDE and FUGUE are missing in 0.16 containers

Issue - State: closed - Opened by mattcieslak about 2 years ago - 1 comment

#460 - SDC problem of different echo time

Issue - State: open - Opened by longfangithub about 2 years ago - 1 comment

#459 - Way to use MNI Pediatric Template?

Issue - State: closed - Opened by dyhan316 about 2 years ago - 6 comments

#456 - No MNI to T1w transform found in anatomical directory

Issue - State: open - Opened by tpatpa over 2 years ago - 2 comments

#454 - pyAFQ error

Issue - State: open - Opened by araikes over 2 years ago - 9 comments

#449 - [ENH] update itk to 5.3

Pull Request - State: closed - Opened by mattcieslak over 2 years ago

#447 - Various `autorecon` errors

Issue - State: closed - Opened by dyhan316 over 2 years ago - 1 comment

#447 - Various `autorecon` errors

Issue - State: closed - Opened by dyhan316 over 2 years ago - 1 comment

#446 - questions about QSIprep 12.1 flow description

Issue - State: closed - Opened by WilliamFCB over 2 years ago - 7 comments

#442 - Add more explicit tests for bundles

Issue - State: closed - Opened by hamsiradhakrishnan over 2 years ago

#438 - Error loading yml plugin using 0.16.ORc3

Issue - State: closed - Opened by WilliamFCB over 2 years ago - 3 comments

#436 - [WIP] ENH: Add TractSeg reconstruction

Pull Request - State: closed - Opened by smeisler over 2 years ago

#435 - [WIP] ENH: Add SIFT-classic

Pull Request - State: closed - Opened by smeisler over 2 years ago - 8 comments

#434 - [WIP] ENH: Export_All in pyafq

Pull Request - State: closed - Opened by smeisler over 2 years ago - 4 comments

#434 - [WIP] ENH: Export_All in pyafq

Pull Request - State: closed - Opened by smeisler over 2 years ago - 4 comments

#432 - Bug in QSIPREP reconstruction pipeline when using --dwi-only

Issue - State: closed - Opened by julfou81 over 2 years ago - 7 comments

#432 - Bug in QSIPREP reconstruction pipeline when using --dwi-only

Issue - State: closed - Opened by julfou81 over 2 years ago - 7 comments

#431 - [feature request] SIFT1

Issue - State: open - Opened by smeisler over 2 years ago

#429 - [ENH] optimize connectome2tck

Pull Request - State: closed - Opened by mattcieslak over 2 years ago

#424 - BrokenProcessPool

Issue - State: closed - Opened by raphaelcuhk over 2 years ago - 1 comment

#423 - Connectivity on Gordon333

Issue - State: closed - Opened by raphaelcuhk over 2 years ago - 1 comment

#422 - WIP: [ENH] Pyafq visualization of the recognized bundles for reportlets

Pull Request - State: closed - Opened by 36000 over 2 years ago - 18 comments

#421 - PyAFQ QC report

Issue - State: closed - Opened by 36000 over 2 years ago - 3 comments

#415 - matrix files - missing data

Issue - State: closed - Opened by hbyrne17 over 2 years ago - 3 comments

#414 - Fixes typos on FreeSurfer requirements for ss3t hsvs recon

Pull Request - State: closed - Opened by pcamach2 over 2 years ago - 1 comment

#413 - QSIPrep not combining same-session dwi scans

Issue - State: closed - Opened by pmd84 over 2 years ago - 11 comments

#412 - QSIprep recon_only is stuck at "plot_connectivity"

Issue - State: closed - Opened by dyhan316 over 2 years ago - 3 comments

#411 - Reorienting to FSL

Issue - State: closed - Opened by araikes over 2 years ago - 2 comments

#410 - Session biases

Issue - State: open - Opened by GalKepler over 2 years ago - 3 comments

#408 - Node t1_2_mni failed to run

Issue - State: closed - Opened by GalKepler over 2 years ago - 3 comments

#407 - Cannot run qsiprep. Missing dependencies: fugue, prelude

Issue - State: closed - Opened by suzhc over 2 years ago - 2 comments

#402 - estimate_fod failed to run

Issue - State: closed - Opened by levchenkoegor over 2 years ago - 1 comment

#400 - AMICO sort of failing

Issue - State: open - Opened by araikes over 2 years ago - 3 comments

#395 - ModuleNotFoundError: No module named 'sklearn.metrics.regression'

Issue - State: closed - Opened by bern-maciel over 2 years ago - 1 comment

#393 - [FIX] Properly transform the 4D CNR images from Eddy

Pull Request - State: closed - Opened by mattcieslak over 2 years ago

#391 - [ENH] Add RecoBundles/BUAN workflow

Issue - State: open - Opened by mattcieslak over 2 years ago

#390 - DWIs not found for dHCP data

Issue - State: closed - Opened by alexamousley over 2 years ago - 3 comments

#389 - Patch2Self after Eddy/ SHORELine

Issue - State: closed - Opened by ShreyasFadnavis over 2 years ago - 1 comment

#388 - Boilerplate question

Issue - State: closed - Opened by araikes over 2 years ago - 4 comments

#385 - Processing HCP-like dataset

Issue - State: closed - Opened by GalKepler over 2 years ago - 5 comments

#384 - --do-reconall doesn't seem to work in v 0.15.x

Issue - State: closed - Opened by giulia-berto over 2 years ago - 3 comments