Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PennLINC/aslprep issues and pull requests

#242 - RepetitionTime is used where RepetitionTimePreparation should be used

Issue - State: closed - Opened by tsalo over 1 year ago
Labels: bug

#241 - Check multi-PLD CBF calculation (0.2.8)

Pull Request - State: closed - Opened by tsalo over 1 year ago

#240 - Check multi-PLD CBF calculation

Pull Request - State: closed - Opened by tsalo over 1 year ago

#239 - Replace T1blood formula from Zhang 2013 with values from Alsop 2015

Issue - State: closed - Opened by tsalo over 1 year ago
Labels: enhancement

#238 - Use a more robust method for estimating LabelingEfficiency

Issue - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: enhancement

#237 - Collect associated files for ASL file in a single step

Issue - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: enhancement

#236 - Remove BIDS-noncompliant m0z and cbf files

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: bug

#235 - Use correct bolus values in CBF calculation and temporarily disable Q2TIPS, multi-PLD, and no-BolusCutOff processing

Pull Request - State: closed - Opened by tsalo over 1 year ago - 4 comments
Labels: bug, breaking-change

#234 - Fix deprecations for new Docker build image release

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: ignore-for-release, maintenance

#233 - Use LabelingEfficiency as BASIL `--alpha` parameter

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: bug

#232 - Make basic CBF and BASIL mutually exclusive

Issue - State: open - Opened by tsalo over 1 year ago - 3 comments
Labels: enhancement, breaking-change, discussion

#231 - Adopt Nipreps configuration and maintenance docs

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: maintenance

#230 - Update config.yml

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment

#229 - The labelingefficiency in .json was not used when calculating basilcbf

Issue - State: closed - Opened by longfangithub over 1 year ago - 3 comments
Labels: enhancement

#228 - ModuleNotFoundError: No module named 'aslprep.smriprep'

Issue - State: closed - Opened by philjohnston over 1 year ago - 5 comments
Labels: bug

#227 - Pin networkx version

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: bug

#226 - networkx version issue

Issue - State: closed - Opened by tsalo over 1 year ago
Labels: bug

#225 - Add ASLPrep DOIs to README and boilerplate

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: ignore-for-release, maintenance

#224 - Add CFF file

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: ignore-for-release, maintenance

#223 - Add custom release notes config file

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: ignore-for-release, maintenance

#222 - Convert inversion times to a list for compatility with BASIL interface

Pull Request - State: closed - Opened by tsalo over 1 year ago - 1 comment
Labels: bug

#221 - Add step to run unit tests

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: testing

#220 - Use custom formatting for workflow connections

Pull Request - State: closed - Opened by tsalo over 1 year ago
Labels: refactor

#219 - Replace sdcflows calls with dependency calls

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 2 comments
Labels: refactor, maintenance

#218 - Improve documentation

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: documentation

#217 - Replace smriprep calls with dependency calls

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: refactor, maintenance

#216 - Rename BIDS-noncompliant derivatives

Pull Request - State: closed - Opened by tsalo almost 2 years ago
Labels: bug, breaking-change

#215 - Replace niworkflows calls with dependency calls

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: maintenance

#214 - What is the origin of the non-BIDS "DELTAM" and "MoScan" suffixes and "asl" datatype?

Issue - State: closed - Opened by tsalo almost 2 years ago - 4 comments
Labels: bug, question

#213 - Replace internal pybids calls with installed pybids calls

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: maintenance

#212 - Remove unused arguments throughout package

Pull Request - State: closed - Opened by tsalo almost 2 years ago
Labels: maintenance

#211 - Pin looseversion

Pull Request - State: closed - Opened by tsalo almost 2 years ago
Labels: bug

#210 - Work on fixing docstrings and splitting modules

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: maintenance

#203 - Use aslprep_build as base Docker image

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: maintenance

#200 - Remove external dependencies

Pull Request - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: refactor, maintenance

#199 - Remove external dependencies

Issue - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: refactor, maintenance

#198 - Auto-format codebase

Issue - State: closed - Opened by tsalo almost 2 years ago - 1 comment
Labels: refactor, maintenance

#197 - ASLprep with CBF maps (GE)

Issue - State: closed - Opened by frdarya almost 2 years ago - 8 comments

#195 - metadata for multi-delay pCASL

Issue - State: open - Opened by emmalxw almost 2 years ago - 7 comments

#194 - Support paused until early 2023

Issue - State: closed - Opened by tsalo about 2 years ago - 1 comment

#192 - Correct ordering of probseg maps

Pull Request - State: closed - Opened by josephmje over 2 years ago - 2 comments
Labels: bug

#191 - Incorrectly labeled GM WM CSF masks

Issue - State: closed - Opened by josephmje over 2 years ago - 2 comments
Labels: bug

#190 - aslprep: error: Path does not exist

Issue - State: closed - Opened by emmalxw over 2 years ago - 5 comments

#189 - PLD/TI not adjusted by slice timing for 2D datasets?

Issue - State: closed - Opened by conan-chen94 over 2 years ago - 2 comments

#187 - ASL-precurate software

Issue - State: closed - Opened by TinasheMTapera over 2 years ago - 1 comment

#186 - ASL-T1 registration

Issue - State: open - Opened by caugolm over 2 years ago - 2 comments

#184 - path does not exist for --anat-derivatives

Issue - State: closed - Opened by Loowie over 2 years ago - 1 comment

#183 - aslprep error, HCP-PCASL sequence (multi-PLD, M0=included)

Issue - State: closed - Opened by markushs over 2 years ago - 1 comment
Labels: bug

#182 - QEI values are all zero in at least one test dataset

Issue - State: open - Opened by sattertt almost 3 years ago - 1 comment
Labels: bug

#181 - Mean relative RMS displacement appears to be wrong

Issue - State: closed - Opened by sattertt almost 3 years ago - 1 comment
Labels: bug

#180 - unhelpful crash with UnicodeDecodeError if json sidecar has non-ascii character

Issue - State: open - Opened by dmd almost 3 years ago - 2 comments

#179 - Freesurfer for cifti

Issue - State: closed - Opened by a3sha2 almost 3 years ago - 1 comment
Labels: enhancement

#176 - Error in scorescrub workflow and missing outputs in template / MNI space

Issue - State: closed - Opened by felenae almost 3 years ago - 2 comments

#175 - 'No "moz" images found' although present in BIDS directory

Issue - State: closed - Opened by felenae almost 3 years ago - 4 comments

#173 - lower threshold mask

Pull Request - State: closed - Opened by a3sha2 almost 3 years ago

#167 - LabelingDuration not defined for PASL acquisitions

Issue - State: closed - Opened by andrewrosss about 3 years ago - 12 comments
Labels: bug

#166 - edited quickstart.rst

Pull Request - State: closed - Opened by scovitz about 3 years ago

#144 - Sdcflow

Pull Request - State: closed - Opened by a3sha2 over 3 years ago

#141 - Cbfcomputation error

Issue - State: closed - Opened by ChristianNSchmitz over 3 years ago - 8 comments
Labels: bug

#137 - Develop

Pull Request - State: closed - Opened by a3sha2 over 3 years ago

#136 - Revert "Revert "@a3sha2 add bids-validator1.6.2 for asl validation""

Pull Request - State: closed - Opened by a3sha2 over 3 years ago

#79 - deltam and m0 crash

Issue - State: closed - Opened by caugolm about 4 years ago - 7 comments

#76 - Suggestions

Issue - State: closed - Opened by HenkMutsaerts about 4 years ago - 4 comments

#50 - Add more detail on BIDSification

Issue - State: open - Opened by sattertt about 4 years ago
Labels: documentation