PennLINC/aslprep issues and pull requests

#442 - Update sentry-sdk requirement from <=2.13.0 to <=2.14.0

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: ignore-for-release, maintenance

#441 - Update templateflow requirement from <=24.2.0 to <=24.2.2

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: ignore-for-release, maintenance

#440 - Update pybids requirement from <=0.17.0 to <=0.17.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: ignore-for-release, maintenance

#439 - Update smriprep requirement from <=0.16.0 to <=0.16.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: ignore-for-release, maintenance

#438 - Update sentry-sdk requirement from <=2.12.0 to <=2.13.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: ignore-for-release, maintenance

#437 - Update sentry-sdk requirement from <=2.9.0 to <=2.12.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: ignore-for-release, maintenance

#436 - Prepare for 0.7.3 release

Pull Request - State: closed - Opened by tsalo 4 months ago
Labels: ignore-for-release, maintenance

#435 - Update smriprep requirement from <=0.15 to <=0.16.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: ignore-for-release, maintenance

#434 - Update niworkflows requirement from ~=1.10.0 to ~=1.11.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: ignore-for-release, maintenance

#433 - Update pybids requirement from <=0.16.5 to <=0.17.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: ignore-for-release, maintenance

#432 - Add `t1tissue` term to multi-delay CBF formula

Pull Request - State: closed - Opened by tsalo 4 months ago
Labels: bug

#431 - wrong equation in utils/cbf.py

Issue - State: closed - Opened by xu-boyan 4 months ago - 3 comments
Labels: bug

#430 - Update sentry-sdk requirement from <=2.9.0 to <=2.11.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 3 comments
Labels: ignore-for-release, maintenance

#429 - Update sentry-sdk requirement from <=2.9.0 to <=2.10.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: ignore-for-release, maintenance

#428 - Update fmriprep requirement from <=24.0,>=23.2 to >=23.2,<=24.0.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: ignore-for-release, maintenance

#427 - Update sentry-sdk requirement from <=2.7.1 to <=2.9.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: ignore-for-release, maintenance

#426 - Update sdcflows requirement from <=2.9.0 to <=2.10.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 3 comments
Labels: ignore-for-release, maintenance

#425 - Update sentry-sdk requirement from <=2.5.1 to <=2.7.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: ignore-for-release, maintenance

#424 - Update psutil requirement from <=5.9.8 to <=6.0.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: ignore-for-release, maintenance

#423 - Update sentry-sdk requirement from <=2.5.1 to <=2.6.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: ignore-for-release, maintenance

#422 - Update sdcflows requirement from <=2.8.1 to <=2.9.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: ignore-for-release, maintenance

#421 - Update sentry-sdk requirement from <=2.3.1 to <=2.5.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: ignore-for-release, maintenance

#420 - Prepare for 0.7.2 release

Pull Request - State: closed - Opened by tsalo 6 months ago - 1 comment
Labels: ignore-for-release, maintenance

#419 - Split giftis by hemisphere

Pull Request - State: closed - Opened by tsalo 6 months ago - 1 comment
Labels: bug

#418 - Mapping CBF images to fsaverage space

Issue - State: closed - Opened by jsbhyyw 6 months ago - 1 comment
Labels: enhancement

#417 - Update sentry-sdk requirement from <=2.2.0 to <=2.3.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: ignore-for-release, maintenance

#416 - Update pybids requirement from <=0.16.4 to <=0.16.5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: ignore-for-release, maintenance

#415 - Update sentry-sdk requirement from <=2.1.1 to <=2.2.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: ignore-for-release, maintenance

#414 - Update sentry-sdk requirement from <=2.0.1 to <=2.1.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: ignore-for-release, maintenance

#413 - Fix the entrypoint path in the Dockerfile

Pull Request - State: closed - Opened by tsalo 7 months ago
Labels: bug

#412 - [FIX] update to newer docker

Pull Request - State: closed - Opened by mattcieslak 7 months ago - 1 comment

#411 - Deployment job is failing with new Docker image

Issue - State: closed - Opened by tsalo 7 months ago
Labels: bug

#410 - Update codecov orb version

Pull Request - State: closed - Opened by tsalo 7 months ago - 4 comments

#409 - [ENH] Update docker image

Pull Request - State: closed - Opened by mattcieslak 7 months ago - 3 comments
Labels: maintenance

#408 - Update templateflow requirement from <=23.0.0 to <=24.2.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: ignore-for-release, maintenance

#407 - Update sentry-sdk requirement from <=1.45.0 to <=2.0.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: ignore-for-release, maintenance

#406 - Update nibabel requirement from <=5.1 to <=5.2.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 3 comments
Labels: ignore-for-release, maintenance

#405 - Update indexed-gzip requirement from <=1.8 to <=1.8.7

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: ignore-for-release, maintenance

#404 - Update sdcflows requirement from <=2.8.0 to <=2.8.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: ignore-for-release, maintenance

#403 - Update psutil requirement from <=5.9 to <=5.9.8

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: ignore-for-release, maintenance

#402 - Update sentry-sdk requirement from <=1.40 to <=1.45.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: ignore-for-release, maintenance

#401 - TypeError: object of type 'float' has no len()

Issue - State: open - Opened by Samuel-Maddox 8 months ago - 4 comments
Labels: bug

#400 - ASLPrep as Flywheel Gear

Issue - State: open - Opened by eduardojdiniz 8 months ago - 1 comment
Labels: enhancement

#399 - Bump FreeSurfer version

Pull Request - State: closed - Opened by tsalo 8 months ago - 2 comments
Labels: bug, maintenance

#398 - recon-all -s exited with ERRORS ERROR: Flag -lh-only unrecognized

Issue - State: open - Opened by labdelmo 8 months ago - 2 comments
Labels: bug

#397 - Update networkx requirement from ~=3.2.1 to ~=3.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: ignore-for-release, maintenance

#396 - Update Nilearn requirement to 0.10.3

Pull Request - State: closed - Opened by tsalo 8 months ago
Labels: maintenance

#395 - Update smriprep requirement from ~=0.13.1 to ~=0.15.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: ignore-for-release, maintenance

#394 - SCRUB limited by chi-squared values to scans with <= 100 control-label pairs

Issue - State: open - Opened by tsalo 9 months ago
Labels: bug

#393 - Update smriprep requirement from ~=0.13.1 to ~=0.14.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: ignore-for-release, maintenance

#392 - Flip order of transforms in `init_ds_volumes_wf`

Pull Request - State: closed - Opened by tsalo 9 months ago
Labels: bug, nipreps

#391 - /home/aslprep/.cache not writable in singularity container

Issue - State: closed - Opened by stebo85 10 months ago - 5 comments
Labels: bug

#390 - Split reports by session for longitudinal datasets

Issue - State: open - Opened by tsalo 10 months ago
Labels: enhancement, nipreps

#389 - Run black

Pull Request - State: closed - Opened by tsalo 10 months ago - 1 comment
Labels: ignore-for-release, refactor

#388 - Support lists in filter file with `*` or `null`

Pull Request - State: closed - Opened by tsalo 10 months ago - 1 comment
Labels: enhancement

#387 - Reproduce nipreps/fmriprep#3208

Pull Request - State: open - Opened by tsalo 10 months ago - 1 comment

#386 - Use T2w for anat coregistration

Issue - State: open - Opened by tsalo 10 months ago
Labels: enhancement

#385 - Add --ignore fmap-jacobian option

Pull Request - State: closed - Opened by tsalo 11 months ago
Labels: enhancement, nipreps

#384 - Update sdcflows requirement from ~=2.7.0 to ~=2.8.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 2 comments
Labels: ignore-for-release, maintenance

#383 - Draft a glossary

Pull Request - State: open - Opened by tsalo 11 months ago - 2 comments

#382 - Update sdcflows requirement from ~=2.6.0 to ~=2.7.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: ignore-for-release, maintenance

#381 - Implement general kinetic model for multi-PLD data

Pull Request - State: open - Opened by tsalo 11 months ago - 2 comments
Labels: enhancement, breaking-change

#380 - Allow --ignore fmap-jacobian

Issue - State: closed - Opened by tsalo 12 months ago
Labels: enhancement

#379 - Improve error messages in ReduceASLFiles

Pull Request - State: closed - Opened by tsalo 12 months ago - 2 comments
Labels: enhancement, ignore-for-release

#378 - Use space definitions from niworkflows

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: refactor, maintenance, nipreps

#377 - Move atlases into a subfolder

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: enhancement, breaking-change

#376 - Move atlases into subfolder

Issue - State: closed - Opened by tsalo 12 months ago
Labels: enhancement, breaking-change

#375 - Rename QC metrics and output QC files as TSVs

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: breaking-change

#374 - Update mistune requirement from <2 to <4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: ignore-for-release, maintenance

#373 - Update networkx requirement from ~=2.8.8 to ~=3.2.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: ignore-for-release, maintenance

#372 - Replace `fmt:on` and `fmt:off` with `fmt:skip`

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: ignore-for-release, refactor

#371 - Use niworkflows enhance-and-skullstrip workflow

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: refactor, nipreps

#370 - Collect aslref-space CBF derivatives as part of precomputed cache

Pull Request - State: open - Opened by tsalo 12 months ago - 1 comment
Labels: enhancement

#369 - Use reportlets from nireports

Pull Request - State: open - Opened by tsalo 12 months ago - 1 comment
Labels: enhancement

#368 - Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: ignore-for-release, maintenance

#367 - Bump actions/setup-python from 2 to 5

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: ignore-for-release, maintenance

#366 - Fix fMRIPrep-related bugs

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: bug, nipreps

#365 - Add dependabot Action

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: maintenance

#364 - Fix several warnings

Pull Request - State: closed - Opened by tsalo 12 months ago - 2 comments
Labels: bug

#363 - Use nireports for report generation

Issue - State: open - Opened by tsalo 12 months ago
Labels: enhancement

#362 - Prepare for 0.6.0 release

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: documentation, maintenance

#361 - Write out GIFTI and CIFTI CBF maps

Pull Request - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: bug, enhancement

#360 - CBF CIFTI project failing

Issue - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: bug

#359 - Collect CBF derivatives as part of precomputed file collection

Issue - State: open - Opened by tsalo 12 months ago
Labels: enhancement

#358 - Carpet and line plots are misaligned

Issue - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: bug

#357 - Add option to disable warped timeseries outputs

Issue - State: open - Opened by tsalo 12 months ago - 1 comment
Labels: enhancement

#356 - Support GIFTI CBF outputs

Issue - State: closed - Opened by tsalo 12 months ago
Labels: enhancement

#355 - Use dependabot

Issue - State: closed - Opened by tsalo 12 months ago
Labels: maintenance

#354 - Pin to SDCFlows 2.6.0 once it's released

Issue - State: closed - Opened by tsalo 12 months ago
Labels: maintenance

#353 - Compare ASLPrep and niworkflows skullstrip workflows

Issue - State: closed - Opened by tsalo 12 months ago - 1 comment
Labels: maintenance

#352 - Use niworkflows' space classes

Issue - State: closed - Opened by tsalo 12 months ago
Labels: maintenance

#351 - Motion-correct slice-shifted delay maps

Issue - State: open - Opened by tsalo 12 months ago
Labels: enhancement

#350 - Determine how best to divide 'minimal', 'resampling', and 'full' levels

Issue - State: open - Opened by tsalo 12 months ago - 1 comment
Labels: enhancement

#349 - Ensure that dummy scans are handled correctly

Issue - State: open - Opened by tsalo 12 months ago
Labels: maintenance

#348 - Limit BASIL `--slicedt` argument to ascending slice orders

Pull Request - State: closed - Opened by tsalo about 1 year ago - 3 comments
Labels: bug

#347 - BASIL call does not account for irregular slice times

Issue - State: closed - Opened by tsalo about 1 year ago
Labels: bug

#346 - Update to Python 3.10

Issue - State: closed - Opened by tsalo about 1 year ago
Labels: maintenance

#345 - Test datasets have bugs

Issue - State: closed - Opened by tsalo about 1 year ago - 3 comments
Labels: bug, testing

#344 - Address warnings

Issue - State: open - Opened by tsalo about 1 year ago - 1 comment
Labels: bug

#343 - Regenerate ASL reference image using CBF for final version

Issue - State: open - Opened by tsalo about 1 year ago - 1 comment
Labels: enhancement

GitHub / PennLINC/aslprep issues and pull requests