Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PeerHerholz/BIDSonym issues and pull requests

#87 - Bidsonym latest fails to run due to TraitError

Issue - State: open - Opened by palandh about 2 months ago - 1 comment
Labels: bug

#86 - local variable 'T1_file' referenced before assignment

Issue - State: open - Opened by hugofluhr 5 months ago - 1 comment
Labels: bug

#85 - Cannot be executed from subfolder

Issue - State: open - Opened by yarikoptic 5 months ago
Labels: bug

#84 - Fresh warnings to tackle

Issue - State: open - Opened by yarikoptic 5 months ago
Labels: bug

#83 - Return lists of defaced t1w and t2w and define it for t2w

Pull Request - State: open - Opened by yarikoptic 6 months ago

#82 - Add -w | --work-dir option (and do not use temporary folder)?

Issue - State: open - Opened by yarikoptic 6 months ago
Labels: enhancement, help wanted

#81 - Update (neuro)docker image

Pull Request - State: open - Opened by yarikoptic 6 months ago - 3 comments

#80 - Remove some key from a repository

Pull Request - State: open - Opened by yarikoptic 6 months ago - 1 comment

#79 - Please provide new docker image

Issue - State: open - Opened by yarikoptic 10 months ago - 2 comments

#78 - Add codespell support: config, workflow + make it fix all typos

Pull Request - State: closed - Opened by yarikoptic 10 months ago - 2 comments

#77 - Dev

Pull Request - State: closed - Opened by PeerHerholz about 1 year ago

#76 - Create docs.yml

Pull Request - State: closed - Opened by PeerHerholz about 1 year ago

#75 - update Dockerfile

Pull Request - State: closed - Opened by PeerHerholz about 1 year ago

#74 - various error fixes

Pull Request - State: closed - Opened by PeerHerholz about 1 year ago

#73 - update Dockerfile and dirty fixes for some errors

Pull Request - State: closed - Opened by PeerHerholz about 1 year ago

#72 - Mismatch between T1 and T2 files

Issue - State: closed - Opened by vferat over 1 year ago
Labels: bug

#71 - Dev fix

Pull Request - State: closed - Opened by vferat over 1 year ago

#70 - [ENH] update docker image

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 7 comments

#69 - crash in report_wf.plt_defaced when subjects have differing number of sessions

Issue - State: open - Opened by BarnardVisionLab almost 2 years ago - 2 comments
Labels: bug

#68 - update bids validator

Issue - State: closed - Opened by Remi-Gau almost 2 years ago
Labels: enhancement, help wanted

#67 - Add MiDeFace as another defacing option (if its a good fit).

Issue - State: open - Opened by rwblair about 2 years ago
Labels: enhancement, help wanted

#66 - root must own output for pydeface? -u $UID:$GID gets error

Issue - State: open - Opened by dkp over 2 years ago
Labels: bug

#65 - Container is unfriendly to htcondor

Issue - State: open - Opened by multiduplikator almost 3 years ago
Labels: enhancement, help wanted

#64 - Version flag doesn't work and need to Update --deid options

Issue - State: open - Opened by julfou81 about 3 years ago - 1 comment
Labels: bug

#63 - Typo fix, added lab web address

Pull Request - State: closed - Opened by jbpoline about 3 years ago

#62 - minor changes in paper

Pull Request - State: closed - Opened by danielskatz about 3 years ago - 1 comment

#61 - .json sidecars mismatched

Issue - State: open - Opened by zenkavi over 3 years ago
Labels: bug

#60 - Update usage.rst

Pull Request - State: closed - Opened by zenkavi over 3 years ago - 1 comment

#59 - Pydeface writing permission error for python egg cache

Issue - State: closed - Opened by m-petersen over 3 years ago - 5 comments
Labels: bug

#58 - update branch

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#57 - mridefacer removes given data

Issue - State: open - Opened by tashrifbillah over 3 years ago - 5 comments
Labels: bug, enhancement

#56 - fix Repronim hyperlink

Pull Request - State: closed - Opened by tashrifbillah over 3 years ago - 2 comments
Labels: enhancement, documentation

#55 - tests?

Issue - State: open - Opened by neuromusic over 3 years ago

#54 - improvements to installation documentation

Issue - State: closed - Opened by neuromusic over 3 years ago - 1 comment
Labels: bug

#53 - minor typos and errors in JOSS manuscript

Issue - State: closed - Opened by neuromusic over 3 years ago - 1 comment
Labels: bug

#52 - Container tests

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#51 - AttributeError: 'list' object has no attribute 'keys'

Issue - State: closed - Opened by dmd over 3 years ago - 3 comments
Labels: bug

#50 - singularity pull from docker

Pull Request - State: closed - Opened by dmd over 3 years ago - 3 comments
Labels: enhancement, documentation

#49 - Deid not working

Issue - State: closed - Opened by araikes over 3 years ago - 3 comments
Labels: bug

#48 - fix BibTex typo

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#47 - update images

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#46 - initial draft Joss paper

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#45 - correct singularity pull syntax

Pull Request - State: closed - Opened by dmd almost 4 years ago - 2 comments
Labels: enhancement

#44 - Sample report in the Outputs Document is Broken

Issue - State: closed - Opened by complexbrains almost 4 years ago - 1 comment
Labels: bug

#43 - Correct several typos

Pull Request - State: open - Opened by complexbrains almost 4 years ago - 1 comment

#42 - DataLad support

Issue - State: open - Opened by PeerHerholz almost 4 years ago
Labels: enhancement, help wanted

#41 - what to do with date information in nifti header?

Issue - State: closed - Opened by Remi-Gau almost 4 years ago - 1 comment
Labels: question

#40 - Bidsonym single session

Issue - State: closed - Opened by araikes almost 4 years ago - 1 comment
Labels: bug, enhancement, question

#39 - Bidsonym not running

Issue - State: closed - Opened by araikes about 4 years ago - 3 comments
Labels: bug, enhancement, question

#38 - Please release 0.0.3

Issue - State: closed - Opened by yarikoptic about 4 years ago - 2 comments
Labels: enhancement

#37 - fix del_meta_data function

Pull Request - State: closed - Opened by PeerHerholz about 4 years ago

#36 - bet fails to find data

Issue - State: open - Opened by yarikoptic about 4 years ago - 1 comment

#35 - Add option to skip BIDS validation

Issue - State: closed - Opened by yarikoptic about 4 years ago - 2 comments

#34 - take some brain extraction as default?

Issue - State: closed - Opened by yarikoptic about 4 years ago

#33 - update version branch

Pull Request - State: closed - Opened by PeerHerholz over 4 years ago

#32 - update branch

Pull Request - State: closed - Opened by PeerHerholz over 4 years ago

#31 - docker hub needs a tagged release

Issue - State: closed - Opened by yarikoptic over 4 years ago - 1 comment
Labels: enhancement

#30 - add option to be able to run multiple defacers for the same source data

Issue - State: open - Opened by yarikoptic over 4 years ago - 1 comment
Labels: enhancement, help wanted, good first issue

#29 - --version provides versioneer garbage instead of actual bidsonym version

Issue - State: closed - Opened by yarikoptic over 4 years ago - 3 comments
Labels: bug, enhancement

#27 - singularity run with pydeface fails due to TraitError from nipype

Issue - State: open - Opened by yarikoptic over 4 years ago - 1 comment

#26 - at least warn whenever incorrect/missing participant id is specified

Issue - State: closed - Opened by yarikoptic over 4 years ago - 2 comments
Labels: bug, enhancement

#24 - Link to SingularityHub to provide ready-to-use singularity container

Issue - State: closed - Opened by yarikoptic over 4 years ago - 3 comments

#23 - read-only input files should not prevent the creation of output replacement

Issue - State: open - Opened by yarikoptic over 4 years ago - 28 comments
Labels: enhancement, help wanted, question

#22 - deepdefacer doesn't not work

Issue - State: closed - Opened by julfou81 over 4 years ago - 5 comments

#21 - T2w not defaced

Issue - State: closed - Opened by julfou81 over 4 years ago - 4 comments

#20 - visual reports not generated

Issue - State: closed - Opened by jbwexler over 4 years ago - 4 comments

#19 - allow any image to be defaced

Issue - State: open - Opened by bpinsard over 4 years ago - 10 comments
Labels: enhancement, help wanted

#18 - InstitutionAddress is not deleted

Issue - State: closed - Opened by hcp4715 over 4 years ago - 3 comments
Labels: bug, enhancement

#17 - PyBids error

Issue - State: closed - Opened by araikes almost 5 years ago - 5 comments
Labels: bug

#16 - blur data

Issue - State: closed - Opened by PeerHerholz almost 5 years ago - 1 comment

#15 - submissions

Issue - State: open - Opened by PeerHerholz about 5 years ago

#14 - multimodal

Issue - State: closed - Opened by CPernet over 5 years ago - 2 comments
Labels: enhancement, help wanted

#13 - anonymize / remove metadata

Issue - State: closed - Opened by PeerHerholz over 5 years ago - 7 comments
Labels: enhancement, help wanted

#12 - Add some tests/ci

Issue - State: open - Opened by yarikoptic over 5 years ago - 5 comments
Labels: enhancement, help wanted

#11 - Add it to official bids-apps list

Issue - State: closed - Opened by yarikoptic over 5 years ago - 4 comments

#10 - add references

Issue - State: closed - Opened by PeerHerholz almost 6 years ago - 1 comment
Labels: help wanted, good first issue

#9 - include more packages

Issue - State: open - Opened by PeerHerholz almost 6 years ago - 4 comments
Labels: enhancement, help wanted

#8 - Default should not be to overwrite files

Issue - State: closed - Opened by kdestasio over 6 years ago - 2 comments

#7 - add osf page

Issue - State: closed - Opened by PeerHerholz over 6 years ago - 1 comment
Labels: enhancement

#6 - quickshear workflow

Issue - State: closed - Opened by PeerHerholz over 6 years ago - 2 comments
Labels: enhancement, help wanted, question

#5 - add generate_Dockerfile.sh

Issue - State: closed - Opened by PeerHerholz over 6 years ago
Labels: enhancement

#4 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by KirstieJane over 6 years ago - 1 comment

#3 - Add code of conduct

Issue - State: closed - Opened by KirstieJane over 6 years ago - 3 comments
Labels: enhancement

#2 - Create LICENSE

Pull Request - State: closed - Opened by PeerHerholz over 6 years ago

#1 - roadmap for brainhack

Issue - State: closed - Opened by PeerHerholz over 6 years ago - 1 comment