PathwayCommons/cytoscape-sbgn-stylesheet issues and pull requests

#88 - Truncated state variable

Issue - State: open - Opened by jvwong 10 months ago

#87 - Changed stylesheet to style to match correct cytoscape.js syntax

Pull Request - State: closed - Opened by steevokovsky over 3 years ago - 2 comments

#86 - Bump webpack-bundle-analyzer from 2.13.1 to 3.6.0

Pull Request - State: open - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#85 - `run-s build`

Issue - State: closed - Opened by lhannest over 5 years ago - 4 comments

#84 - OR node labels

Issue - State: open - Opened by d2fong over 6 years ago

#83 - Add demo

Issue - State: closed - Opened by maxkfranz over 6 years ago - 3 comments

#82 - Remove `cytoscape` arg for `sbgnStylesheet( cytoscape )`

Issue - State: open - Opened by maxkfranz almost 7 years ago

#81 - performance gains for minimizing the size of svg images

Issue - State: open - Opened by d2fong almost 7 years ago - 1 comment

#80 - Sbgn units of information and statevars have a warped box if the label is too long

Issue - State: open - Opened by d2fong almost 7 years ago

#79 - New tooling

Pull Request - State: closed - Opened by d2fong almost 7 years ago

#78 - Multimer

Pull Request - State: closed - Opened by d2fong about 7 years ago

#77 - Make a default font size for all nodes except process nodes, let users override the values as they see fit

Issue - State: closed - Opened by d2fong about 7 years ago - 1 comment

#76 - Fix clonemarker height -- should be 100% instead of a fixed constant

Issue - State: open - Opened by d2fong about 7 years ago
Labels: bug

#75 - rework the stadium shape as well as the base rectangle shape

Issue - State: open - Opened by d2fong over 7 years ago

#74 - change peer dependency to official cytoscape 3.2 once it is released

Issue - State: closed - Opened by d2fong over 7 years ago

#73 - Provide mechanisms for users to extend some of the conflicting properties

Issue - State: open - Opened by d2fong over 7 years ago

#72 - Render more than one state var and unit of information

Issue - State: open - Opened by d2fong over 7 years ago - 2 comments

#71 - Make multi-img generation more robust

Issue - State: open - Opened by d2fong over 7 years ago

#70 - 2.0

Pull Request - State: closed - Opened by d2fong over 7 years ago

#69 - alter width / height props to make nucleic acid features and macromolecules differentiable

Issue - State: closed - Opened by d2fong over 7 years ago

#68 - refactor svg drawing functions and selectors

Issue - State: closed - Opened by d2fong over 7 years ago

#67 - compound style aux. items for all nodes (non-compound)

Issue - State: closed - Opened by d2fong over 7 years ago

#66 - release 2.0 once cytoscape 3.2 is available

Issue - State: closed - Opened by d2fong over 7 years ago

#65 - document the style properties that will conflict with this stylesheet

Issue - State: closed - Opened by d2fong over 7 years ago

#64 - slightly more faithful state var / units of info

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#63 - rename this repository and package again

Issue - State: closed - Opened by d2fong over 7 years ago

#62 - not working in firefox: multi image visuals for complexes and compartments

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment
Labels: bug

#61 - 1.1.0

Pull Request - State: closed - Opened by d2fong over 7 years ago

#60 - cached multi image approach for compound nodes

Issue - State: closed - Opened by d2fong over 7 years ago

#59 - Multi img

Pull Request - State: closed - Opened by d2fong over 7 years ago

#58 - Signalling Layout Triage

Issue - State: closed - Opened by d2fong over 7 years ago - 13 comments

#57 - Scale both compartment region height and width based on number of nodes and edges it contains

Issue - State: closed - Opened by d2fong over 7 years ago

#56 - use the arrow scale prop to make arrow heads larger

Issue - State: closed - Opened by d2fong over 7 years ago

#55 - running cose in a bounding box with one node results in that node's position being undefined

Issue - State: closed - Opened by d2fong over 7 years ago

#54 - bg position for images + padding doesnt seem to work

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#53 - multiple svg images -- property alignment

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#52 - Layout comparison for demo

Issue - State: closed - Opened by d2fong over 7 years ago

#51 - Support more ways for users to extend the stylesheet

Issue - State: open - Opened by d2fong over 7 years ago

#50 - Document node json requirements

Issue - State: closed - Opened by d2fong over 7 years ago

#49 - auxiliary items multiple images

Issue - State: closed - Opened by d2fong over 7 years ago

#48 - Layout tweaks

Issue - State: closed - Opened by d2fong over 7 years ago - 14 comments

#47 - cytoscape expand collapse only works on the first loaded graph

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#46 - Metabolic Layout

Issue - State: closed - Opened by d2fong over 7 years ago - 3 comments

#45 - Signalling Pathway Layout

Issue - State: closed - Opened by d2fong over 7 years ago - 4 comments

#44 - Does not work in firefox

Issue - State: closed - Opened by d2fong over 7 years ago - 3 comments

#43 - Refactor expanded, collapsed functionality to set node display to none

Issue - State: closed - Opened by d2fong over 7 years ago

#42 - if a complex node has no children, the rendergraph function throws an error

Issue - State: closed - Opened by d2fong over 7 years ago

#41 - sometimes filtered nodes might be necessary?

Issue - State: closed - Opened by d2fong over 7 years ago

#40 - Include SBGN Renderer in Render Comparison

Issue - State: open - Opened by cannin over 7 years ago

#39 - Complexity reduction

Pull Request - State: closed - Opened by d2fong over 7 years ago

#38 - Converter v3 integration

Pull Request - State: closed - Opened by d2fong over 7 years ago

#37 - reduce graph complexity

Issue - State: closed - Opened by d2fong over 7 years ago

#36 - biology layout

Issue - State: closed - Opened by d2fong over 7 years ago - 7 comments

#35 - text width measuring

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#34 - Auxillary items

Pull Request - State: closed - Opened by d2fong over 7 years ago

#33 - complex node scaling is wonky

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#32 - Refactor logic for scaling nodes

Issue - State: open - Opened by d2fong over 7 years ago - 1 comment

#31 - cut corner rect changes

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#30 - sbgn logic module

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#29 - language for sets of style properties

Issue - State: closed - Opened by d2fong over 7 years ago

#28 - define fixed size dimensions for all sbgn nodes

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#27 - svg node shapes -- strings vs elements

Issue - State: closed - Opened by d2fong over 7 years ago

#26 - code improvements

Issue - State: closed - Opened by d2fong over 7 years ago

#25 - sbgnml to cytoscape v2

Issue - State: closed - Opened by d2fong over 7 years ago

#24 - SVG Masking

Issue - State: closed - Opened by d2fong over 7 years ago

#23 - Public Shape API

Issue - State: closed - Opened by d2fong over 7 years ago

#22 - node DOMParser implementation

Issue - State: closed - Opened by d2fong over 7 years ago

#21 - Consistent node sizing scheme

Issue - State: closed - Opened by d2fong over 7 years ago - 8 comments

#20 - Super Test Graph + Test Infrastructure

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#19 - Base shapes

Pull Request - State: closed - Opened by d2fong over 7 years ago

#18 - adds test infrastructure

Pull Request - State: closed - Opened by d2fong over 7 years ago

#17 - sbgn svg shape implementations seem too coupled to cytoscape node methods

Issue - State: closed - Opened by d2fong over 7 years ago

#16 - Nice to have continuous integration after tests are set up

Issue - State: closed - Opened by d2fong over 7 years ago

#15 - ES6 classes seem to have a compatibility issue with cy.js extensions

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#14 - Migrate es6

Pull Request - State: closed - Opened by d2fong over 7 years ago

#13 - remove modified cytoscape

Pull Request - State: closed - Opened by d2fong over 7 years ago

#12 - Entity Pool Nodes

Issue - State: closed - Opened by d2fong over 7 years ago - 9 comments

#11 - Process Nodes

Issue - State: closed - Opened by d2fong over 7 years ago - 3 comments

#10 - livereload for sbgn-renderer

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#9 - tests for svg generation

Issue - State: closed - Opened by d2fong over 7 years ago - 3 comments

#8 - Remove modified cytoscape dependency

Issue - State: closed - Opened by d2fong over 7 years ago

#7 - Svg experimentation

Pull Request - State: closed - Opened by d2fong over 7 years ago

#6 - Migrate to es6

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#5 - Implementation notes -- The node shape rendering pipeline

Issue - State: closed - Opened by d2fong over 7 years ago - 14 comments

#4 - Source and sink shape crude implementation + SVG exploration

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#3 - SBGN API

Issue - State: closed - Opened by d2fong over 7 years ago - 1 comment

#2 - SBGN Edge Ports

Issue - State: open - Opened by d2fong over 7 years ago - 2 comments

#1 - SBGN Node Shapes

Issue - State: closed - Opened by d2fong over 7 years ago - 4 comments

GitHub / PathwayCommons/cytoscape-sbgn-stylesheet issues and pull requests