Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PacificBiosciences/pbcommand issues and pull requests

#190 - doc link to old version

Issue - State: open - Opened by osallou almost 5 years ago - 1 comment

#189 - Please port to Python3

Issue - State: open - Opened by tillea over 5 years ago

#188 - update setuptools

Pull Request - State: closed - Opened by natechols over 7 years ago

#187 - remove pbservice cmd

Pull Request - State: closed - Opened by natechols about 8 years ago - 1 comment

#186 - bug fix

Pull Request - State: closed - Opened by natechols about 8 years ago

#185 - output PipelinePreset as OrderedDict

Pull Request - State: closed - Opened by natechols about 8 years ago

#184 - allow comma in floating-point report values

Pull Request - State: closed - Opened by natechols about 8 years ago

#183 - add sts.h5 filetype

Pull Request - State: closed - Opened by natechols about 8 years ago

#182 - don't warn about unknown plot ID in apply_view

Pull Request - State: closed - Opened by natechols about 8 years ago

#181 - I need to know the path to spec-file on validation error.

Pull Request - State: closed - Opened by pb-cdunn about 8 years ago - 2 comments

#180 - Remove unused xmlbuilder from REQ*.txt

Pull Request - State: closed - Opened by mpkocher about 8 years ago - 1 comment

#179 - Unused xmlbuilder dependency

Issue - State: closed - Opened by mbakke about 8 years ago - 1 comment

#178 - also replace blank strings with spec labels

Pull Request - State: closed - Opened by natechols about 8 years ago

#177 - allow int values in column when float expected

Pull Request - State: closed - Opened by natechols about 8 years ago

#176 - allow Attribute value to be None

Pull Request - State: closed - Opened by natechols about 8 years ago - 1 comment

#175 - README typo fix

Pull Request - State: closed - Opened by ben-lerch about 8 years ago

#174 - method to apply view metadata to report

Pull Request - State: closed - Opened by natechols about 8 years ago

#173 - Fixing rtd

Pull Request - State: closed - Opened by mpkocher about 8 years ago

#172 - Add ipython for sphinx ext for RTD

Pull Request - State: closed - Opened by mpkocher about 8 years ago

#171 - Chunk docs

Pull Request - State: closed - Opened by mpkocher about 8 years ago - 1 comment

#170 - report specs: more documentation, isHidden

Pull Request - State: closed - Opened by natechols about 8 years ago

#169 - minor fixes to report spec models

Pull Request - State: closed - Opened by natechols about 8 years ago

#168 - minor spec change, and validate format strings when loading

Pull Request - State: closed - Opened by natechols about 8 years ago

#167 - Report specification model

Pull Request - State: closed - Opened by natechols about 8 years ago - 1 comment

#166 - Report validation

Pull Request - State: closed - Opened by natechols about 8 years ago

#165 - add ZIP file type

Pull Request - State: closed - Opened by natechols about 8 years ago

#164 - Update readme

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#163 - Add datastore schema

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#162 - Readme add models

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#160 - Datastore view rules schema and models

Pull Request - State: closed - Opened by natechols over 8 years ago

#159 - Add env and executable=/bin/bash (by default)

Pull Request - State: closed - Opened by mpkocher over 8 years ago - 2 comments

#158 - Add pacbio-manifest.json

Pull Request - State: closed - Opened by mpkocher over 8 years ago - 4 comments

#157 - enable Table __str__ method to handle columns with null headers

Pull Request - State: closed - Opened by ben-lerch over 8 years ago

#156 - enforce pipeline presets schema more rigorously

Pull Request - State: closed - Opened by natechols over 8 years ago

#155 - minor fixes to PipelinePreset model

Pull Request - State: closed - Opened by natechols over 8 years ago

#154 - allow GmapReferenceSet import (and fix ConsensusAlignmentSet endpoint)

Pull Request - State: closed - Opened by natechols over 8 years ago

#153 - avro schema and python model for pipeline presets

Pull Request - State: closed - Opened by natechols over 8 years ago

#152 - tool contract option resolver bug fix

Pull Request - State: closed - Opened by natechols over 8 years ago - 1 comment

#151 - Rm jschema task opt

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#150 - use PacBioTestData repo

Pull Request - State: closed - Opened by natechols over 8 years ago

#149 - Add support for title in Plot

Pull Request - State: closed - Opened by mpkocher over 8 years ago - 1 comment

#148 - Tc schema

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#147 - Add title attribute to report Plot

Issue - State: closed - Opened by mpkocher over 8 years ago - 4 comments

#146 - Update report model docs

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#145 - Add version to quick CLI tool

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#144 - Add Adapter fasta metatype

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#143 - Report Model 1.0.0 using Schema Validation

Issue - State: open - Opened by mpkocher over 8 years ago - 1 comment

#142 - Remove numpy dep

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#141 - Mk rpt v1

Pull Request - State: closed - Opened by mpkocher over 8 years ago - 3 comments

#140 - Add report docs from pbreports

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#139 - Add relative path support to ReseqConditions

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#138 - Add missing job states

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#137 - Add Sal methods to get report attributes.

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#136 - increment version

Pull Request - State: closed - Opened by natechols over 8 years ago

#135 - add bigwig file type

Pull Request - State: closed - Opened by natechols over 8 years ago - 1 comment

#134 - Expand Reseq Condition Data model

Issue - State: open - Opened by mpkocher over 8 years ago - 2 comments

#133 - remove DB_GMAP 'file' type

Pull Request - State: closed - Opened by natechols over 8 years ago

#132 - add file types for GmapReferenceSet

Pull Request - State: closed - Opened by natechols over 8 years ago

#131 - added unit tests for get_by_id methods

Pull Request - State: closed - Opened by ben-lerch over 8 years ago - 1 comment

#130 - added get_by_id methods

Pull Request - State: closed - Opened by ben-lerch over 8 years ago - 1 comment

#129 - Add git sha to version

Issue - State: open - Opened by mpkocher over 8 years ago

#128 - Mk expand quick

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#127 - Add Reseq Condition data model and IO layers. Update to 0.3.26

Pull Request - State: closed - Opened by mpkocher over 8 years ago - 1 comment

#126 - Add Condition Data Model and IO layers

Issue - State: closed - Opened by mpkocher over 8 years ago - 1 comment

#125 - check for empty dataset before accessing BAM file

Pull Request - State: closed - Opened by natechols over 8 years ago

#124 - get rid of trailing whitespace in json output

Pull Request - State: closed - Opened by natechols over 8 years ago

#123 - Push SA 3.1.0 compatible version to pypi

Issue - State: open - Opened by mpkocher over 8 years ago

#122 - Make log_level in RTC optional for backwards compatibility

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#121 - Add explicit types to Report Attribute model

Issue - State: open - Opened by mpkocher over 8 years ago

#120 - Add lookup by job UUID to pbservice

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#119 - pbcommand requires numpy

Issue - State: closed - Opened by mhsieh over 8 years ago - 1 comment

#118 - use streaming parser to retrieve dataset metatype and UUID

Pull Request - State: closed - Opened by natechols over 8 years ago - 1 comment

#117 - Docs for Quick Model

Issue - State: open - Opened by mpkocher over 8 years ago

#116 - Please tag releases

Issue - State: open - Opened by 0xaf1f over 8 years ago - 2 comments

#115 - use DataStoreFile model when retrieving job reports

Pull Request - State: closed - Opened by natechols over 8 years ago

#113 - added gzip file type

Pull Request - State: closed - Opened by natechols over 8 years ago

#112 - Add --non-local to import-dataset

Issue - State: closed - Opened by mpkocher over 8 years ago - 2 comments

#111 - Add uuid to Report model. Update unittest

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#110 - Add UUID to Report data model

Issue - State: closed - Opened by mpkocher over 8 years ago - 1 comment

#109 - pbservice fixes and enhancements

Pull Request - State: closed - Opened by mpkocher over 8 years ago

#108 - pbservice dataset by Id or UUID is failing

Issue - State: closed - Opened by mpkocher over 8 years ago - 1 comment

#107 - add name and description to datastore model

Pull Request - State: closed - Opened by natechols over 8 years ago

#106 - fix for HdfSubreadSet

Pull Request - State: closed - Opened by natechols over 8 years ago

#105 - also check for dataset in list when skipping import

Pull Request - State: closed - Opened by natechols over 8 years ago

#104 - verify dataset import

Pull Request - State: closed - Opened by natechols over 8 years ago - 2 comments

#80 - pbcommand requires numpy

Pull Request - State: closed - Opened by mhsieh over 8 years ago - 3 comments

#77 - RTC spec for 1.0

Issue - State: closed - Opened by mpkocher almost 9 years ago - 1 comment

#74 - Importing DataSets with spurious error message

Issue - State: closed - Opened by mpkocher almost 9 years ago - 1 comment

#71 - Consider adding --to-json to pbservice

Issue - State: closed - Opened by mpkocher almost 9 years ago - 2 comments
Labels: enhancement

#70 - Add Job entry-points to Service AccessLayer

Issue - State: closed - Opened by mpkocher almost 9 years ago - 2 comments

#50 - --quiet option only partially successful

Issue - State: closed - Opened by natechols almost 9 years ago - 4 comments

#40 - Add log_level support to RTC

Issue - State: closed - Opened by mpkocher almost 9 years ago - 2 comments
Labels: enhancement

#30 - report IO uses inconsistent versions

Issue - State: closed - Opened by natechols about 9 years ago - 4 comments

#22 - OutputFileType updated to have basename_default

Issue - State: closed - Opened by mpkocher about 9 years ago - 2 comments
Labels: bug, enhancement

#19 - Implement Support for All Resource Types

Issue - State: open - Opened by mpkocher about 9 years ago - 2 comments
Labels: bug

#18 - Avro Schemas for TC and RTC are complete for 1.0.0

Issue - State: open - Opened by mpkocher about 9 years ago - 2 comments
Labels: bug, enhancement

#1 - toolrunner

Issue - State: closed - Opened by dalexander over 9 years ago - 5 comments