PacificBiosciences/ANGEL issues and pull requests

#37 - Bio.Alphabet has been removed from Biopython 1.78

Issue - State: closed - Opened by yy-liang over 3 years ago - 3 comments

#36 - UnicodeDecodeError at angel_predict.py

Issue - State: open - Opened by yy-liang almost 4 years ago - 1 comment

#35 - angel_predict.py takes forever with --use_rev_strand option

Issue - State: closed - Opened by LiorFaigon almost 4 years ago - 7 comments

#34 - problem running dumb_predict.py -"Cannot find cd-hit! Abort!"

Issue - State: closed - Opened by reutnuri about 4 years ago - 1 comment

#33 - Q: ORFs of NA type

Issue - State: closed - Opened by emaleckova over 4 years ago - 1 comment

#32 - error on angel_train.py, pickle not produced

Issue - State: closed - Opened by veravelasco almost 5 years ago - 2 comments

#31 - Fatal error at dumb_predict.py

Issue - State: closed - Opened by veravelasco almost 5 years ago - 1 comment

#30 - Unable to get classifier.pickle result

Issue - State: closed - Opened by chuanyingliu about 5 years ago - 5 comments

#29 - dumb orf prediction

Issue - State: closed - Opened by rsalz about 5 years ago - 1 comment

#28 - CD HIT

Issue - State: closed - Opened by rsalz about 5 years ago - 1 comment

#27 - Seq "tostring()" method finally outdated

Issue - State: closed - Opened by rsalz about 5 years ago - 2 comments

#26 - Problems running angel_predict.py

Issue - State: closed - Opened by steffi778 over 5 years ago - 5 comments

#25 - Some questions about cds analysis

Issue - State: closed - Opened by WayneForever over 5 years ago - 1 comment

#24 - angel_predict.py ：max_depth

Issue - State: closed - Opened by MaPengyu over 5 years ago - 1 comment

#23 - issues with build

Issue - State: closed - Opened by rsalz over 5 years ago - 1 comment

#22 - ANGEL intermidiate files clean up

Issue - State: closed - Opened by aksenia over 5 years ago - 2 comments

#21 - Can not get the 'pickle' file when running 'angle train.py'

Issue - State: closed - Opened by ClearloveMiao over 5 years ago - 2 comments

#20 - memory issue while running angel_train.py

Issue - State: closed - Opened by ghost almost 6 years ago - 4 comments

#19 - Cant extract all .cds predictions with a simple grep - only type:confident

Issue - State: closed - Opened by EmilyAmor almost 6 years ago - 1 comment

#18 - angel_train.py hangs with 12 cores

Issue - State: closed - Opened by EmilyAmor almost 6 years ago - 1 comment

#17 - A problem with running angel_train.py

Issue - State: closed - Opened by lijl459 about 6 years ago - 2 comments

#16 - A problem with running ANGEL

Issue - State: closed - Opened by ClearloveMiao about 6 years ago - 12 comments

#15 - Some problem about CD-HIT when using angel_make_training_set.py

Issue - State: closed - Opened by lijl459 about 6 years ago - 1 comment

#14 - Some problems about ANGEL.cds

Issue - State: closed - Opened by Trandamere over 6 years ago - 1 comment

#13 - angel_train.py error

Issue - State: closed - Opened by Trandamere over 6 years ago - 4 comments

#12 - Update README.md

Pull Request - State: closed - Opened by mhsieh almost 7 years ago

#11 - All transcripts strand are forward (+)

Issue - State: closed - Opened by linglingtingfei almost 7 years ago - 1 comment

#10 - ANGEL classifier training: not UTR file

Issue - State: closed - Opened by uso2015 about 7 years ago - 2 comments

#9 - Complete cds or partial cds?

Issue - State: closed - Opened by linglingtingfei over 7 years ago - 1 comment

#8 - angel_predict.py gets stuck and does nothing

Issue - State: closed - Opened by linglingtingfei over 7 years ago - 13 comments

#7 - feature: adding CDS track to output GFF

Issue - State: open - Opened by Magdoll over 7 years ago - 2 comments

#6 - angel_train.py hanging with refseq sequences

Issue - State: closed - Opened by sjin09 almost 8 years ago - 7 comments

#5 - posted wrong place, please delete this thread

Issue - State: closed - Opened by pengchy almost 9 years ago
Labels: invalid

#4 - Feature request: --firstORF instead of longest ORF

Issue - State: closed - Opened by Magdoll almost 9 years ago - 1 comment

#3 - scipy required

Issue - State: closed - Opened by adeslatt over 9 years ago - 1 comment

#2 - Questions about ANGEL, thanks!

Issue - State: closed - Opened by lamz138138 over 9 years ago - 18 comments

#1 - Spelling Correction from Dawson's Spelling Bee

Pull Request - State: closed - Opened by dawsbot over 9 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / PacificBiosciences/ANGEL issues and pull requests