PMEAL/porespy issues and pull requests

#996 - Fix typo

Pull Request - State: open - Opened by habi 28 days ago

#993 - Rename lr to learning_rate in create_model function

Issue - State: open - Opened by DOMFIRMUS about 1 month ago

#991 - Fixed edges of blobs to maintain uniform density

Pull Request - State: open - Opened by jgostick about 1 month ago

#990 - Should all 'parallelization' related arguments be converted to `parallel_args'?

Issue - State: open - Opened by jgostick about 1 month ago - 1 comment
Labels: api

#989 - We should add a `dt` helper method to `tools`

Issue - State: open - Opened by jgostick 2 months ago
Labels: easy, maint

#988 - Fix `find_trapped_regions` when uninvaded voxels exist on outlet

Issue - State: open - Opened by jgostick 3 months ago
Labels: bug, high priority

#986 - Up to date tortuosity_bt

Pull Request - State: closed - Opened by rickyfann 3 months ago

#985 - Simplify CI workflows

Pull Request - State: closed - Opened by ma-sadeghi 4 months ago - 1 comment
Labels: maint

#984 - Apply Ruff throughout the code base

Pull Request - State: closed - Opened by ma-sadeghi 4 months ago - 1 comment

#983 - Simplify release workflow

Pull Request - State: closed - Opened by ma-sadeghi 4 months ago

#982 - Drop `dev` and develop directly on `main` to streamline workflow

Issue - State: closed - Opened by ma-sadeghi 4 months ago - 7 comments
Labels: discussion

#981 - Different phase fraction on edges of blobs output

Issue - State: open - Opened by amirDahari1 4 months ago - 6 comments

#980 - Avoid overflow errors with _get_radial_sum

Pull Request - State: closed - Opened by cmaloney111 4 months ago - 2 comments

#978 - Clearence - pseudo gravity

Issue - State: open - Opened by IColizzi 4 months ago

#977 - Porespy encounters an error when generating images using fractal noise, and I can't resolve it.

Issue - State: closed - Opened by Maoxinmaoxin 4 months ago - 5 comments

#976 - Make `voxel_size` a mandatory argument everywhere

Issue - State: open - Opened by jgostick 5 months ago

#975 - Pull request to merge MAGNET into dev branch

Pull Request - State: open - Opened by mkaguer 5 months ago

#974 - Add type hints everywhere

Issue - State: open - Opened by jgostick 5 months ago

#973 - How to mute the warning of installing pypardiso

Issue - State: open - Opened by yojeep 5 months ago

#971 - Should funcs return a normal dict instead of a "results" object?

Issue - State: closed - Opened by jgostick 5 months ago - 2 comments
Labels: discussion

#969 - Finalizing tortuosity_bt and rev functions

Pull Request - State: closed - Opened by jgostick 5 months ago - 1 comment

#968 - Setting seed and testing porosity on all generated blobs images

Pull Request - State: closed - Opened by jgostick 6 months ago - 1 comment

#967 - Parallel extract

Pull Request - State: closed - Opened by jgostick 6 months ago - 10 comments

#966 - `two_point_correlation_fft` is only calculated for one orthant

Issue - State: open - Opened by amirDahari1 6 months ago - 1 comment
Labels: bug

#965 - Consistency in the relation to length or size in arguments of generators

Issue - State: open - Opened by amirDahari1 6 months ago
Labels: api

#964 - Adding gravity to ibip

Pull Request - State: closed - Opened by jgostick 6 months ago - 1 comment

#963 - fractal_noise porositiy as an argument

Issue - State: closed - Opened by amirDahari1 6 months ago - 3 comments

#962 - All distributions to uniform, fixes #961

Pull Request - State: closed - Opened by amirDahari1 6 months ago - 2 comments

#961 - blobs porosity is off for porosity different than 0.5

Issue - State: closed - Opened by amirDahari1 6 months ago

#959 - `fill_blind_pores` docstrings needs to be swapped

Issue - State: open - Opened by ma-sadeghi 7 months ago
Labels: easy, doc

#958 - Implement parallel extraction

Pull Request - State: closed - Opened by Arenhart 7 months ago - 3 comments

#957 - pseudo_gravity_packing: for clearance=0 and smooth=True: empty voxel between spheres in some siuations

Issue - State: open - Opened by heinsimon 7 months ago - 1 comment
Labels: bug

#955 - Examples are not rerun when deploying docs

Issue - State: open - Opened by ma-sadeghi 8 months ago - 2 comments
Labels: help wanted, doc

#954 - `find_h` needs some love

Issue - State: open - Opened by jgostick 8 months ago
Labels: api, doc

#953 - Use keyword `method` instead of `mode`

Issue - State: open - Opened by jgostick 8 months ago - 3 comments
Labels: api

#952 - Ensure all images attached to Results objects start with `im_`

Issue - State: open - Opened by jgostick 8 months ago
Labels: api

#951 - `overlay` needs modes

Issue - State: open - Opened by jgostick 8 months ago
Labels: enhancement

#950 - `overlay` does not work in 2D

Issue - State: open - Opened by jgostick 8 months ago

#949 - Using `conn` consistently throughout

Issue - State: open - Opened by jgostick 8 months ago - 2 comments
Labels: discussion, api

#948 - Changes to random_spheres API

Pull Request - State: closed - Opened by jgostick 8 months ago - 1 comment

#947 - change volume_fraction to phi throughout

Issue - State: closed - Opened by jgostick 8 months ago - 2 comments
Labels: api

#946 - remove `return_spheres` arg from `random_spheres`

Issue - State: closed - Opened by jgostick 8 months ago - 1 comment

#945 - The color map in the xray visualization function should be reversed

Issue - State: open - Opened by jgostick 8 months ago

#944 - Make sure all metrics return a `Results` object

Issue - State: open - Opened by jgostick 8 months ago

#943 - Remove MaxBall wrapper

Issue - State: open - Opened by jgostick 8 months ago
Labels: api

#942 - Replace `sierpinski_foam` with `sierpinski_foam2`, and drop the 2

Issue - State: open - Opened by jgostick 8 months ago
Labels: api

#941 - All tqdm instances should include a description.

Issue - State: open - Opened by jgostick 8 months ago - 1 comment
Labels: enhancement

#940 - Add a `satn_to_time` function

Issue - State: open - Opened by jgostick 8 months ago
Labels: enhancement

#937 - normalized sem and xray views

Pull Request - State: closed - Opened by Anthero1 8 months ago - 1 comment

#936 - `spheres_from_coords` does not allow to add one sphere and adding spheres in same plane (not at 0!) will result in 2D-image

Issue - State: open - Opened by heinsimon 9 months ago - 2 comments
Labels: bug, high priority

#935 - pseudo_gravity_packing: Not adding all possible spheres and input radius not correctly used

Issue - State: closed - Opened by heinsimon 9 months ago - 2 comments

#932 - Fix `points_to_spheres` bug in 3D

Pull Request - State: closed - Opened by heinsimon 9 months ago - 6 comments

#931 - Merge release -> dev to propagate version number bump

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: high priority

#930 - Prepare for release of v2.4.1

Pull Request - State: closed - Opened by ma-sadeghi 9 months ago - 1 comment

#929 - Refactor sem view

Pull Request - State: closed - Opened by Anthero1 9 months ago - 1 comment

#926 - Merge release -> dev to propagate version number bump

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment
Labels: high priority

#925 - Prepare for release of v2.4

Pull Request - State: closed - Opened by ma-sadeghi 9 months ago - 1 comment

#924 - AI-assisted diffusive conductance model is failing, possibly a `tensorflow` API change

Issue - State: open - Opened by ma-sadeghi 9 months ago - 2 comments
Labels: bug

#923 - Refactor Actions, deprecate Python <3.10, hatch build system, and more

Pull Request - State: closed - Opened by ma-sadeghi 9 months ago - 1 comment
Labels: maint

#922 - Fixing pseudo packing functions

Pull Request - State: closed - Opened by jgostick 9 months ago - 3 comments

#921 - Migrate from setup.py to pyproject.toml

Pull Request - State: closed - Opened by ma-sadeghi 9 months ago - 1 comment

#920 - `tortuosity_gdd` is not deterministic

Issue - State: closed - Opened by ma-sadeghi 9 months ago - 1 comment
Labels: bug

#919 - `tortuosity_gdd` returns throat tortusoity values in the wrong order

Issue - State: closed - Opened by ma-sadeghi 9 months ago
Labels: bug

#917 - `points_to_spheres` not adding spheres correctly for 3D images

Issue - State: closed - Opened by heinsimon 9 months ago - 1 comment
Labels: bug

#916 - Redundant `edges` argument in `pseudo_gravity_packing`

Issue - State: closed - Opened by heinsimon 9 months ago - 1 comment
Labels: bug

#912 - Refactor `sem` to find location first non-zero

Issue - State: closed - Opened by jgostick 10 months ago - 1 comment

#911 - Adding micromodels

Pull Request - State: closed - Opened by jgostick 10 months ago

#909 - How to calculate surface roughness and specific surface area in a 3D generated PTL on Porespy?

Issue - State: closed - Opened by AMITGHOSH21999 10 months ago

#907 - Convert from setup.py to pyproject.toml

Issue - State: closed - Opened by jgostick 10 months ago
Labels: maint

#906 - Enhancing api

Pull Request - State: closed - Opened by jgostick 10 months ago - 1 comment

#905 - Improving local_thickness and porosimetry

Pull Request - State: open - Opened by jgostick 11 months ago - 1 comment

#902 - Error importing module: No module named 'matplotlib._docstring'

Issue - State: closed - Opened by ferokko about 1 year ago - 3 comments

#899 - Updating the python versions for testing

Pull Request - State: closed - Opened by jgostick about 1 year ago - 1 comment

#898 - Adding polydisperse_cylinders function to beta

Pull Request - State: closed - Opened by jgostick about 1 year ago - 1 comment

#897 - `visualize.sem` should return a normalized image between 0 and 1

Issue - State: closed - Opened by jgostick about 1 year ago
Labels: api

#896 - Improve speed and API of local thickness

Issue - State: open - Opened by jgostick about 1 year ago - 1 comment
Labels: api

#895 - Add mode to `sierpinski_foam2` to handle how cropping is done

Issue - State: open - Opened by jgostick about 1 year ago

#894 - List of examples we should make to populate the FAQ section

Issue - State: open - Opened by jgostick about 1 year ago

#893 - Memory leak in `diffusive_size_factor_dns`

Issue - State: closed - Opened by jgostick about 1 year ago

#891 - `setup_rich_logger` interferes with global logging config

Issue - State: closed - Opened by ma-sadeghi about 1 year ago - 1 comment
Labels: bug

#889 - The porosity difference between PNM and Porespy

Issue - State: closed - Opened by morendong about 1 year ago - 2 comments

#888 - `porosity` function return results object with and without filling blind pores

Issue - State: open - Opened by jgostick about 1 year ago

#887 - Adding some micromodel generators to the beta module

Pull Request - State: closed - Opened by jgostick about 1 year ago - 1 comment

#885 - Tidying up after some recent PRs

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#884 - using _insert_disk method instead of dilating using edt

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#882 - How to get grain size distribution through the image generated from PoreSpy

Issue - State: closed - Opened by morendong over 1 year ago - 1 comment

#879 - SNOW network extraction

Issue - State: closed - Opened by morendong over 1 year ago - 4 comments

#877 - Compute tortuosity using domain decomposition and network modeling

Pull Request - State: closed - Opened by rickyfann over 1 year ago - 1 comment

#876 - Implement "electrode tortuosity"

Issue - State: open - Opened by ma-sadeghi over 1 year ago
Labels: feature request

#875 - Visualization helper functions are inconsistent

Issue - State: open - Opened by ma-sadeghi over 1 year ago - 1 comment
Labels: help wanted, easy, api

#874 - Adding ramp generator and local_diff filter to beta folder

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#873 - Add `flux` and `tau_from_cmap` to simulations module

Pull Request - State: closed - Opened by ma-sadeghi over 1 year ago - 1 comment

#872 - `align_image_with_openpnm` not working as intended

Issue - State: open - Opened by shillcoat over 1 year ago - 2 comments

#871 - Add ablog plugin

Pull Request - State: closed - Opened by jgostick over 1 year ago - 2 comments

#870 - Speeding up sphere insertions

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#869 - Deprecate COMSOL IO?

Issue - State: open - Opened by ma-sadeghi over 1 year ago
Labels: discussion, api

#868 - Export to COMSOL

Issue - State: closed - Opened by kunal0kumar0sinha over 1 year ago - 1 comment

#867 - Adding beta module

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#865 - Add `pc_to_seq` func

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

#864 - Readding tic and toc funcs to tools

Pull Request - State: closed - Opened by jgostick over 1 year ago - 1 comment

GitHub / PMEAL/porespy issues and pull requests