Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / PMCC-BioinformaticsCore/janis-pipelines issues and pull requests
#41 - fix inputs issue wgssomatic_variantsonly
Pull Request -
State: closed - Opened by GraceAHall 11 months ago
#40 - Release v0.12.0
Pull Request -
State: closed - Opened by rlupat about 1 year ago
#39 - UncompressArchive '-f' for nextflow compatibility
Pull Request -
State: closed - Opened by GraceAHall over 1 year ago
#38 - Fix bug
Pull Request -
State: closed - Opened by jiaan-yu about 2 years ago
- 1 comment
#37 - Add mRNA expression pipeline
Pull Request -
State: closed - Opened by jiaan-yu about 2 years ago
- 1 comment
#36 - Refactor pipelines and implement unit tests
Pull Request -
State: closed - Opened by jiaan-yu over 2 years ago
#35 - Bug fix: correctly parse adapter/contaminant sequence from fastqc
Pull Request -
State: closed - Opened by jiaan-yu over 2 years ago
- 1 comment
#34 - Add RNA-Seq Fusion Workflow
Pull Request -
State: closed - Opened by jiaan-yu over 2 years ago
- 1 comment
#33 - WGSSomatic workflows not fully optimised
Issue -
State: closed - Opened by jiaan-yu over 2 years ago
- 2 comments
#32 - Add Circos plot
Pull Request -
State: closed - Opened by jiaan-yu almost 3 years ago
#31 - Rename outputs
Pull Request -
State: closed - Opened by jiaan-yu almost 3 years ago
#30 - Re-organise somatic paired workflow outputs
Pull Request -
State: closed - Opened by jiaan-yu almost 3 years ago
#29 - Update unit_tests.yml
Pull Request -
State: closed - Opened by junyk about 3 years ago
#28 - Change remote file paths
Pull Request -
State: closed - Opened by xinzhel97 about 3 years ago
#27 - update unit tests for nextflow output
Pull Request -
State: closed - Opened by junyk about 3 years ago
#26 - update unit tests so that it works for nextflow
Pull Request -
State: closed - Opened by junyk about 3 years ago
#25 - Replace Gatk4GatherVcfs with bcftools-concat
Pull Request -
State: closed - Opened by jiaan-yu about 3 years ago
- 1 comment
#24 - Upgrade v0.11.3
Pull Request -
State: closed - Opened by junyk about 3 years ago
#23 - upgrade janis-pipelines version
Pull Request -
State: closed - Opened by junyk about 3 years ago
#22 - Seperate addbamstats from the add_gatk_variantcaller fuction (breaking change)
Pull Request -
State: closed - Opened by jiaan-yu about 3 years ago
- 2 comments
#21 - Manta fix and clean up function name
Pull Request -
State: closed - Opened by jiaan-yu about 3 years ago
#20 - Modify alignment to take array of fastqs
Pull Request -
State: closed - Opened by jiaan-yu about 3 years ago
#19 - Add unit test for WGSSomaticGATK pipeline
Pull Request -
State: closed - Opened by xinzhel97 about 3 years ago
- 1 comment
#18 - Update unit test for WGSGermlineGATK
Pull Request -
State: closed - Opened by xinzhel97 about 3 years ago
#17 - Update version number
Pull Request -
State: closed - Opened by junyk over 3 years ago
#16 - Udpate test case expected output
Pull Request -
State: closed - Opened by junyk over 3 years ago
#15 - Tests/wgsgermlinegatk
Pull Request -
State: closed - Opened by junyk over 3 years ago
#14 - Add facets and bug fixing
Pull Request -
State: closed - Opened by jiaan-yu over 3 years ago
#13 - Add KidsFirst pipeline translations
Pull Request -
State: closed - Opened by illusional over 3 years ago
#12 - Type alias silence warnings
Pull Request -
State: closed - Opened by illusional over 3 years ago
#11 - V0.11.x changes
Pull Request -
State: closed - Opened by illusional over 3 years ago
- 1 comment
#10 - Refactor structure of WGS pipelines
Pull Request -
State: closed - Opened by illusional almost 4 years ago
- 1 comment
#9 - Ensure base recalibration is using interval
Issue -
State: closed - Opened by illusional almost 4 years ago
#8 - Add reference to germline / somatic add bam stats workflow
Pull Request -
State: closed - Opened by jiaan-yu almost 4 years ago
#7 - Minor fixes
Pull Request -
State: closed - Opened by jiaan-yu almost 4 years ago
#6 - Add genome_file generator to WGS pipeline
Pull Request -
State: closed - Opened by illusional almost 4 years ago
#5 - Merge updated wgs pipelines
Pull Request -
State: closed - Opened by jiaan-yu almost 4 years ago
- 1 comment
#4 - I assume this has never been tested.
Pull Request -
State: closed - Opened by drtconway about 4 years ago
- 1 comment
#3 - WIP: Api review
Pull Request -
State: closed - Opened by illusional almost 5 years ago
- 1 comment
#2 - Create LICENSE
Pull Request -
State: closed - Opened by illusional about 5 years ago
#1 - Missing licensing information
Issue -
State: closed - Opened by cbrueffer about 5 years ago
- 1 comment