Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PEtab-dev/petab_test_suite issues and pull requests

#78 - More models to antimony

Pull Request - State: closed - Opened by dweindl 5 months ago

#77 - Update README

Pull Request - State: closed - Opened by dweindl 5 months ago

#76 - simplesbml -> ant

Pull Request - State: closed - Opened by dweindl 5 months ago

#75 - replace simplesbml by antimony

Issue - State: closed - Opened by dweindl 5 months ago

#74 - Use petab.v1

Pull Request - State: closed - Opened by dweindl 5 months ago

#73 - Add pre-commit and ruff config

Pull Request - State: closed - Opened by dweindl 5 months ago

#72 - Set up pre-commit auto-formatting

Issue - State: closed - Opened by dweindl 5 months ago

#71 - Use v2 linter for v2 problems

Pull Request - State: closed - Opened by dweindl 5 months ago

#70 - v2: Add tests for timecourses

Issue - State: open - Opened by dweindl 5 months ago
Labels: new test case

#69 - v2: Add test without a condition table

Issue - State: open - Opened by dweindl 5 months ago
Labels: new test case

#68 - setup.py -> pyproject.toml

Pull Request - State: closed - Opened by dweindl 5 months ago

#67 - Add math expression test cases

Pull Request - State: closed - Opened by dweindl 5 months ago

#66 - Add test with multiple models

Issue - State: open - Opened by dweindl 5 months ago
Labels: new test case

#65 - Check stale branches

Issue - State: closed - Opened by dweindl 5 months ago
Labels: new test case

#64 - Document how to add new test cases

Issue - State: closed - Opened by dweindl 5 months ago

#62 - Add test case with estimated initial conditions specified via the conditions table.

Issue - State: closed - Opened by dweindl 5 months ago
Labels: new test case

#61 - Add test case with parameters with initial assignments

Issue - State: open - Opened by dweindl 9 months ago
Labels: new test case

#60 - Add test case for objectivePriors

Issue - State: open - Opened by paulflang over 1 year ago
Labels: new test case

#59 - Test interpretation of parameterScale

Issue - State: open - Opened by paulflang over 1 year ago - 2 comments

#58 - Add tests with compartments updates in condition table

Issue - State: open - Opened by FFroehlich over 1 year ago
Labels: new test case

#57 - v2.0: Add tests with SBML local parameters

Issue - State: open - Opened by dweindl over 1 year ago
Labels: new test case

#56 - Multiple mapping files

Pull Request - State: closed - Opened by dweindl over 1 year ago

#55 - Add tests for concentrations vs amounts in condition table

Issue - State: open - Opened by dweindl over 1 year ago
Labels: new test case

#54 - Update GHA workflow

Pull Request - State: closed - Opened by dweindl over 1 year ago

#53 - Add test cases for PEtab v2.0.0

Pull Request - State: closed - Opened by dweindl over 2 years ago

#52 - Update test case 0002: NaN parameter in condition table

Pull Request - State: closed - Opened by dweindl over 2 years ago

#51 - Change initial concentration for species in test model

Pull Request - State: closed - Opened by dweindl over 2 years ago

#50 - Handle pathlib.Path

Pull Request - State: closed - Opened by dweindl over 2 years ago

#48 - Cleanup imports

Pull Request - State: closed - Opened by dweindl over 2 years ago

#47 - Separate SBML and PySB test suite

Pull Request - State: closed - Opened by dweindl over 2 years ago

#46 - Add brief descriptions and generate table of contents

Pull Request - State: closed - Opened by dweindl over 2 years ago

#45 - Refactor test cases

Pull Request - State: closed - Opened by dweindl over 2 years ago

#44 - Show diff in case of not properly regenerated tests

Pull Request - State: closed - Opened by dweindl over 2 years ago

#43 - Round expected results

Pull Request - State: closed - Opened by dweindl over 2 years ago - 1 comment

#42 - Add test case 0018 for RateRule targets in condition table

Pull Request - State: closed - Opened by dweindl over 2 years ago

#41 - Package test cases into omex archives

Issue - State: open - Opened by dweindl over 3 years ago

#40 - Drop python 3.6, as PEtab requires >=3.7

Pull Request - State: closed - Opened by dweindl over 3 years ago

#39 - 0017: Change initial states for preequilibration to become meaningful

Pull Request - State: closed - Opened by dweindl over 3 years ago

#38 - Symlink not working for PEtab tests

Issue - State: closed - Opened by dilpath almost 4 years ago - 3 comments

#37 - Fix store all cases in bundle

Pull Request - State: closed - Opened by yannikschaelte almost 4 years ago

#36 - Fix storing all cases in bundle

Pull Request - State: closed - Opened by yannikschaelte almost 4 years ago - 1 comment

#35 - Feature reinitialization cases. Closes #30

Pull Request - State: closed - Opened by LeonardSchmiester almost 4 years ago - 1 comment

#34 - Make deployable with file dependencies

Pull Request - State: closed - Opened by yannikschaelte almost 4 years ago

#33 - Package and deploy to pypi

Issue - State: closed - Opened by dweindl almost 4 years ago

#32 - Add PySB testcases [dummy]

Pull Request - State: closed - Opened by dweindl about 4 years ago - 1 comment

#31 - Create table of contents of the available test cases

Issue - State: closed - Opened by dweindl about 4 years ago

#30 - Add further tests for preequilibration and reinitialization

Issue - State: closed - Opened by dweindl about 4 years ago
Labels: new test case

#29 - Test: Parameterized noise models 2

Issue - State: open - Opened by yannikschaelte about 4 years ago
Labels: new test case

#28 - Update README.md

Pull Request - State: closed - Opened by dweindl over 4 years ago

#27 - Add PySB testcases

Pull Request - State: closed - Opened by FFroehlich over 4 years ago - 2 comments

#26 - Test: Multiple parameter files

Issue - State: open - Opened by yannikschaelte over 4 years ago
Labels: new test case

#25 - #0007 likelihood calculation

Issue - State: closed - Opened by adrianhauber over 4 years ago - 8 comments

#24 - Check gradients

Issue - State: open - Opened by yannikschaelte over 4 years ago

#23 - fix 0005 sbml model; rerun 0007 with log10 llh corrected

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago - 4 comments

#22 - split test 0007 to log10 and log

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago

#21 - Fix 0012: Wrong initial b

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago - 1 comment

#20 - #0007 tests multiple settings at once

Issue - State: closed - Opened by refisch over 4 years ago - 3 comments

#19 - Fix: Bug in test model 12

Pull Request - State: closed - Opened by marcusrosenblatt over 4 years ago - 1 comment

#18 - question to test case 12

Issue - State: closed - Opened by marcusrosenblatt over 4 years ago - 1 comment

#17 - Update 0007.md

Pull Request - State: closed - Opened by dweindl over 4 years ago

#16 - add versioning, add proper license

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago - 1 comment

#15 - Remove extraneous parameter from case 10; validate petab after writin…

Pull Request - State: closed - Opened by dweindl over 4 years ago

#14 - Add test for observable dependent noise model

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago - 1 comment

#13 - add test for parameterized initial conditions

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago

#12 - file names within test cases

Issue - State: closed - Opened by marcusrosenblatt over 4 years ago - 2 comments

#11 - challenge for 0007

Issue - State: closed - Opened by marcusrosenblatt over 4 years ago - 4 comments

#10 - fix 0006

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago

#9 - bug in test model 0006!?

Issue - State: closed - Opened by marcusrosenblatt over 4 years ago - 4 comments

#8 - adjust python to >= 3.6

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago

#7 - add tests 9-14

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago - 4 comments

#6 - Present details on which tools support what

Issue - State: closed - Opened by yannikschaelte over 4 years ago - 5 comments
Labels: question

#5 - Performance criterion

Issue - State: closed - Opened by yannikschaelte over 4 years ago - 3 comments
Labels: question

#4 - Run tests on github actions

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago

#3 - Set up github action to run petablint on test cases

Issue - State: closed - Opened by dweindl over 4 years ago

#2 - Add readme

Issue - State: closed - Opened by yannikschaelte over 4 years ago - 1 comment

#1 - Set up framework and set up first tests

Pull Request - State: closed - Opened by yannikschaelte over 4 years ago