Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PEtab-dev/libpetab-python issues and pull requests

#153 - get_parameter_df: Allow any collection of parameter tables

Pull Request - State: closed - Opened by dweindl over 2 years ago

#152 - Add support for PEtab problems with multiple condition files

Pull Request - State: closed - Opened by dweindl over 2 years ago - 1 comment

#151 - More informative petab.calculate errors

Pull Request - State: closed - Opened by dweindl over 2 years ago - 1 comment

#150 - Fix handling of NaN values for parameters in condition table

Pull Request - State: closed - Opened by dweindl over 2 years ago - 3 comments

#149 - Plot measurements for t = 'inf'

Pull Request - State: closed - Opened by plakrisenko over 2 years ago - 1 comment

#148 - Unclear how to encode noise model: `Mismatch of noise parameter overrides`

Issue - State: closed - Opened by matthiaskoenig over 2 years ago - 2 comments

#147 - Update the example_visualization_without_visspec notebook

Pull Request - State: closed - Opened by plakrisenko over 2 years ago

#146 - Update example notebooks

Pull Request - State: closed - Opened by plakrisenko almost 3 years ago - 2 comments

#145 - Add PySBModel for handling of PySB models

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#144 - Always re-execute example notebooks / use myst-nb

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#143 - Exclude `math` from `from petab.C import *`

Pull Request - State: closed - Opened by dweindl almost 3 years ago

#142 - Add candidate schema for version 2

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#141 - Refactor yaml validation schemas

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#140 - Remove ancient deprecated functions related to specifying observables/noise models inside SBML

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 2 comments

#139 - Simplify test model creation - use simplesbml

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#138 - Handle incomplete PEtab problems in `petab.Problem.from_yaml`

Pull Request - State: closed - Opened by dweindl almost 3 years ago

#137 - Update first vis example notebook; use non-deprecated functions

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 3 comments

#136 - CI: Run tests only with min+max supported Python version

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#135 - Speedup visspec assembly / fix deprecation warning

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#134 - Validator: Report empty noiseFormula

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#133 - Add abstraction for (SBML) models

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#132 - Remove ancient/deprecated default file naming scheme

Pull Request - State: closed - Opened by dweindl almost 3 years ago

#131 - Remove deprecated functions related to sbml-observables

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#130 - Remove deprecated visualization functions

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 2 comments

#129 - petablint: Fix incorrect noise-parameter-mismatch error message

Pull Request - State: closed - Opened by dweindl almost 3 years ago - 1 comment

#128 - Validator: Add option to warn about unused / non-standard columns

Issue - State: open - Opened by dweindl almost 3 years ago
Labels: enhancement, validation

#127 - Create dummy simulation conditions dataframe for empty measurements

Pull Request - State: closed - Opened by dilpath almost 3 years ago

#126 - Apply get table method before write table method to ensure correct index

Pull Request - State: closed - Opened by dilpath almost 3 years ago - 1 comment

#125 - Bugfix writing index in condition table

Pull Request - State: closed - Opened by matthiaskoenig almost 3 years ago

#124 - Method to check if measurement time is at steady-state

Pull Request - State: closed - Opened by dilpath almost 3 years ago

#123 - Unclear what is wrong with PEtab problem after running linter

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 14 comments
Labels: question, validation

#122 - How to run validation programmatically?

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 2 comments

#121 - Release 0.1.26

Pull Request - State: closed - Opened by dweindl almost 3 years ago

#120 - Fix SBML Rule handling logic

Pull Request - State: closed - Opened by dweindl almost 3 years ago

#119 - Objective function

Pull Request - State: closed - Opened by EmadAlamoudi almost 3 years ago

#113 - Reduce tests to min+max python?

Issue - State: closed - Opened by yannikschaelte almost 3 years ago
Labels: question

#111 - empty `noiseFormula` is invalid but passes linting

Issue - State: closed - Opened by FFroehlich almost 3 years ago

#104 - Fix MANIFEST.in, add missing files

Pull Request - State: closed - Opened by dweindl about 3 years ago - 1 comment

#89 - Update visualization notebooks

Issue - State: closed - Opened by dweindl about 3 years ago - 5 comments
Labels: documentation, visualization

#32 - Missing validity check for simulationConditionId.

Issue - State: closed - Opened by FFroehlich over 4 years ago - 3 comments
Labels: validation

#29 - observables but not species supported in `noiseFormula`

Issue - State: closed - Opened by paulflang over 4 years ago - 4 comments

#22 - Visualization of measurements without condition table and visualization table

Issue - State: open - Opened by dweindl over 4 years ago
Labels: visualization

#16 - BarPlots ignore xValues

Issue - State: open - Opened by FFroehlich almost 5 years ago - 6 comments
Labels: visualization

#15 - visualization, multiple yValues in one plot

Issue - State: closed - Opened by FFroehlich almost 5 years ago - 4 comments
Labels: visualization

#12 - timepoints 'inf' should throw an error if one plots time series

Issue - State: closed - Opened by MerktSimon about 5 years ago - 5 comments
Labels: visualization

#8 - Implement validation of PEtab visualization files

Issue - State: closed - Opened by dweindl about 5 years ago - 1 comment
Labels: visualization, validation

#7 - Add support for multiple condition files per petab.Problem

Issue - State: closed - Opened by dweindl about 5 years ago

#1 - Additional test for visualisation

Issue - State: closed - Opened by JanHasenauer almost 6 years ago - 3 comments
Labels: visualization