PALEOtoolkit/PALEOmodel.jl issues and pull requests

#97 - add initialize! check_units_opt keyword to check linked Variable units are consistent

Pull Request - State: closed - Opened by sjdaines 4 months ago

#96 - Add parameters to output file

Issue - State: open - Opened by ssjos 4 months ago

#95 - OutputMemory add user_data Dict

Pull Request - State: closed - Opened by sjdaines 5 months ago

#94 - Add support for netcdf input/output of CartesianArrayGrid

Pull Request - State: closed - Opened by sjdaines 5 months ago

#93 - Update PALEOmodel.jl for SDEproblem

Pull Request - State: closed - Opened by ziheng-Li 5 months ago

#92 - Bugfix for ModelODE

Pull Request - State: closed - Opened by sjdaines 6 months ago

#91 - Updates to support parameter sensitivity studies

Pull Request - State: closed - Opened by sjdaines 6 months ago

#90 - Bump julia-actions/setup-julia from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#89 - Support new StateTotal variable

Pull Request - State: closed - Opened by sjdaines 7 months ago

#88 - Fix typos in ReactionNetwork.show_ratesummaries()

Pull Request - State: closed - Opened by sjdaines 7 months ago

#87 - Fix for DAE initialisation

Pull Request - State: closed - Opened by sjdaines 7 months ago

#86 - Fix display of stats from SciML ODE solver

Pull Request - State: closed - Opened by sjdaines 8 months ago

#85 - Generalize PALEOmodel.SteadyState.solve_ptc to support algebraic constraints

Pull Request - State: closed - Opened by sjdaines 8 months ago

#84 - Remove workaround for NCDatasets issue (fixed in v0.14.2)

Pull Request - State: closed - Opened by sjdaines 8 months ago

#83 - Update [compat] for MultiFloats v2

Pull Request - State: closed - Opened by sjdaines 8 months ago

#82 - Workaround for issue in NCDatasets v0.14

Pull Request - State: closed - Opened by sjdaines 8 months ago

#81 - Bugfix for SolverFunctions.StepClampAll!

Pull Request - State: closed - Opened by sjdaines 8 months ago

#80 - Fixes for NCDatasets v0.13

Pull Request - State: closed - Opened by sjdaines 8 months ago

#79 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#78 - Bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#77 - CompatHelper: bump compat for NCDatasets to 0.14, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#76 - Nonlinear solve TODO

Issue - State: open - Opened by sjdaines 12 months ago

#75 - CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago

#74 - SteadyState solver robustness updates

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#73 - Update to Documenter.jl v1

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#72 - Restrict sundials [compat]

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#71 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#70 - Add reference to Shampine (1999)

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#69 - Add PALEOmodel.SteadyState.ConservationCallback

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#68 - logging tidyup

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#67 - Speed up netcdf read output by factor x3

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#66 - Add max_failed_iter option to steadystate_ptc solvers

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#65 - spzeros fix for Julia 1.6

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#64 - Use attributes on rate variable instead of get_rate_stoichiometry()

Pull Request - State: closed - Opened by sjdaines about 1 year ago - 1 comment

#63 - Fixes to avoid spurious recompilation when using steady-state solvers

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#62 - Split dae fix

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#61 - steadystate_ptc_splitdae fails with atm chem model with two short-lived reactants

Issue - State: closed - Opened by sjdaines about 1 year ago - 2 comments

#60 - Documentation update: add ReactionNetwork doc, update to DocumenterCitations v1.0.0

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#59 - Robustness fix for SteadyState.steadystate_ptc_splitdae solver

Pull Request - State: closed - Opened by sjdaines about 1 year ago

#58 - Spurious warnings when saving netcdf output

Issue - State: closed - Opened by sjdaines about 1 year ago - 1 comment

#57 - Test code for packed CellSpace Variables

Pull Request - State: open - Opened by sjdaines about 1 year ago

#56 - Support time derivative (by supplying a tgrad function) for SciML Rosenbrock solvers

Issue - State: open - Opened by sjdaines about 1 year ago

#55 - Add set_statevar_from_output!

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#54 - Netcdf output

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#53 - Use a generic xarray-like Julia package for output

Issue - State: open - Opened by sjdaines over 1 year ago

#52 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#51 - Bump codecov/codecov-action from 1 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#50 - Bump actions/cache from 1 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#49 - Add PrecompileTools precompilation

Pull Request - State: open - Opened by sjdaines over 1 year ago

#48 - Align FieldArray with Python xarray and netCDF data model

Issue - State: open - Opened by sjdaines over 1 year ago - 1 comment

#47 - Use Makie for plots

Issue - State: open - Opened by sjdaines over 1 year ago - 2 comments

#46 - Add another ForwardDiff workaround for StaticArrays

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#45 - Workaround for ForwardDiff with StaticArrays

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#44 - CompatHelper: bump compat for SparseDiffTools to 2, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#43 - Workaround for ForwardDiff extract_jacobian

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#42 - CompatHelper: bump compat for ForwardDiff to 0.10, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment

#41 - Workaround for issues with ForwardDiff.jl v0.10.35

Pull Request - State: closed - Opened by sjdaines over 1 year ago

#40 - steadystate_ptc_splitdae and integrateLocalIMEXEuler fail with ForwardDiff.jl v0.10.35

Issue - State: open - Opened by sjdaines over 1 year ago - 3 comments

#39 - Sync with PALEOboxes v0.21.7 ModelData simplification

Pull Request - State: closed - Opened by sjdaines almost 2 years ago

#38 - PlotPager optional argument to save to file

Pull Request - State: closed - Opened by sjdaines almost 2 years ago

#37 - Fix steadystate_ptc fails with start time != 0.0

Pull Request - State: closed - Opened by sjdaines almost 2 years ago

#36 - steadystate_ptc fails if start time != 0

Issue - State: closed - Opened by sjdaines almost 2 years ago