Ecosyste.ms: Issues

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GitHub / OxWearables/stepcount issues and pull requests

#129 - feat: detect activity bouts and calculate bout metrics

Pull Request - State: closed - Opened by chanshing 24 days ago

#128 - Error: Killedting to dataframe...

Issue - State: closed - Opened by DrArtist2027 about 1 month ago - 1 comment

#126 - fix: add missing start and end times info when input is csv

Pull Request - State: closed - Opened by chanshing 3 months ago

#125 - how to deal data with real time?

Issue - State: open - Opened by Epoch2022-iOS 3 months ago

#124 - refactor: swap _HourXX _WeekX in field name

Pull Request - State: closed - Opened by chanshing 4 months ago

#123 - feat: weekend and weekday stats

Pull Request - State: closed - Opened by chanshing 4 months ago

#121 - feat: hour-of-day averages

Pull Request - State: closed - Opened by chanshing 4 months ago

#120 - IndexError when processing (old ?) GENEActiv .bin files

Issue - State: open - Opened by cWam-zz 4 months ago - 5 comments

#119 - weekdays/weekend stats

Issue - State: closed - Opened by chanshing 4 months ago - 1 comment

#118 - hourly stats in Info.json

Issue - State: closed - Opened by chanshing 4 months ago - 1 comment

#117 - feat: include package version and input args used to run script

Pull Request - State: closed - Opened by chanshing 5 months ago

#116 - Add Stepcount version info to Info.json

Issue - State: closed - Opened by Maylor8 5 months ago - 1 comment

#114 - refactor: add 'Filename' column; rename 'time' column

Pull Request - State: closed - Opened by chanshing 5 months ago

#113 - fix: field name is missing ')'

Pull Request - State: closed - Opened by chanshing 5 months ago

#112 - fix: use median in impute_days for cadence only

Pull Request - State: closed - Opened by chanshing 5 months ago

#110 - fix dtypes: int converted to float when there are NAs

Issue - State: closed - Opened by chanshing 5 months ago

#109 - change impute_days default median -> mean

Pull Request - State: closed - Opened by chanshing 5 months ago

#108 - more flexible NA handling when adjusted estimation

Pull Request - State: closed - Opened by chanshing 5 months ago

#107 - fix(skip_full_missing_days): fix bug all() -> any()

Pull Request - State: closed - Opened by chanshing 5 months ago

#106 - tweaks to adjusted estimates

Pull Request - State: closed - Opened by chanshing 5 months ago

#104 - ci: remove install.yaml

Pull Request - State: closed - Opened by chanshing 5 months ago

#103 - ci: use artifacts for model weights (the joblib files) for reuse

Pull Request - State: closed - Opened by chanshing 5 months ago

#102 - SSL torch model significantly slower in MacOS M1

Issue - State: open - Opened by chanshing 5 months ago

#101 - refactor(ssl): check model loaded first, then check len(X)

Pull Request - State: closed - Opened by chanshing 5 months ago

#100 - refactor: improve how ssl model is loaded

Pull Request - State: closed - Opened by chanshing 5 months ago

#99 - ci: use artifacts to prevent http request rate limit exceeded

Pull Request - State: closed - Opened by chanshing 5 months ago

#96 - add CONTRIBUTING.md

Issue - State: closed - Opened by chanshing 5 months ago

#95 - feat: field "Covers24hOK" to check 24h coverage

Pull Request - State: closed - Opened by chanshing 5 months ago

#93 - wrong README.md output files description

Issue - State: closed - Opened by chanshing 5 months ago

#92 - Update README.md

Pull Request - State: closed - Opened by KPCOFGS 5 months ago - 1 comment

#91 - Concat ENMO and steps columns into one output dataframe/CSV

Pull Request - State: closed - Opened by chanshing 5 months ago

#89 - chore(enmo): promptly downsample to reduce computation and memory

Pull Request - State: closed - Opened by chanshing 5 months ago

#88 - Fix `.sum()` returning 0 when all-NaNs

Pull Request - State: closed - Opened by chanshing 5 months ago

#86 - Fix cadence adjustment

Pull Request - State: closed - Opened by chanshing 5 months ago

#85 - Use coarser grid in imputation: 1-min -> 5-min grid

Pull Request - State: closed - Opened by chanshing 5 months ago

#83 - Fix cadence's `steptol`: normalize to steps/min

Pull Request - State: closed - Opened by chanshing 5 months ago

#82 - Data dictionary missing adjusted variable columns

Issue - State: open - Opened by ashreves 5 months ago

#81 - fix: use only walking windows when calculating max

Pull Request - State: closed - Opened by chanshing 5 months ago

#80 - fix: impute walking separately

Pull Request - State: closed - Opened by chanshing 5 months ago

#79 - fix: zero-out predicted steps < steptol

Pull Request - State: closed - Opened by chanshing 5 months ago

#78 - chore: deprecate median ptiles at; shorten field names

Pull Request - State: closed - Opened by chanshing 6 months ago

#77 - feat: output enmo metrics

Pull Request - State: closed - Opened by chanshing 6 months ago

#76 - feat: output minute-level data

Pull Request - State: closed - Opened by chanshing 6 months ago

#75 - fix: use only walking windows when calculating 95th cadence

Pull Request - State: closed - Opened by chanshing 6 months ago

#74 - feat: steps 5th & 95th ptiles at; refactor field names

Pull Request - State: closed - Opened by chanshing 6 months ago

#73 - ci: (temporary fix) comment out test pypi release

Pull Request - State: closed - Opened by chanshing 6 months ago

#72 - chore: silence warning 'Mean of empty slice'

Pull Request - State: closed - Opened by chanshing 6 months ago

#71 - fix NoneType error

Pull Request - State: closed - Opened by chanshing 6 months ago

#70 - fix(predict): handle zero-length X inputs

Pull Request - State: closed - Opened by chanshing 6 months ago

#69 - feat: 95th percentile of cadence

Pull Request - State: closed - Opened by chanshing 6 months ago

#68 - fix: peak cadence to nan when not enough data

Pull Request - State: closed - Opened by chanshing 6 months ago

#67 - Data dictionary for collated output

Issue - State: closed - Opened by ashreves 6 months ago

#66 - feat: support specifying custom headers for CSV inputs

Pull Request - State: closed - Opened by chanshing 7 months ago

#65 - fix NaT freq issue when recording is extremely small

Pull Request - State: closed - Opened by chanshing 7 months ago

#64 - refactor: use mean for infer_freq but remove outliers

Pull Request - State: closed - Opened by chanshing 7 months ago

#62 - Failure with new `hmmlearn 0.3.0`

Issue - State: closed - Opened by muschellij2 8 months ago - 2 comments

#61 - Unable to read .csv files

Issue - State: closed - Opened by freeman-jr1 8 months ago - 2 comments

#60 - fix(read): handle filenames containing dots, confusing extension

Pull Request - State: closed - Opened by chanshing 8 months ago

#59 - Period in filename causes failure

Issue - State: closed - Opened by muschellij2 8 months ago - 1 comment

#58 - ActiGraph .gt3x error

Issue - State: closed - Opened by daslan29 8 months ago - 3 comments

#57 - ENH Allow multiple files passing

Issue - State: open - Opened by muschellij2 8 months ago

#56 - ci: include macos in smoke tests

Pull Request - State: closed - Opened by chanshing 8 months ago

#55 - build: bump version: hmmlearn 0.2.7 -> 0.3.*

Pull Request - State: closed - Opened by chanshing 8 months ago

#54 - fix: use normal indexing instead of boolean indexing

Pull Request - State: closed - Opened by chanshing 8 months ago

#52 - feat: add option to explicitly pass sample rate

Pull Request - State: closed - Opened by muschellij2 9 months ago - 1 comment

#51 - Sample Rate Mis-Estimated

Issue - State: closed - Opened by muschellij2 9 months ago

#50 - Fix: update setup.py to require actipy>=3.0.5 to fix #49

Pull Request - State: closed - Opened by muschellij2 9 months ago - 1 comment

#49 - AttributeError: 'Timedelta' object has no attribute 'astype'

Issue - State: closed - Opened by muschellij2 9 months ago - 1 comment

#48 - refactor: adjust cadence using weekdaily stats

Pull Request - State: closed - Opened by chanshing 10 months ago

#47 - refactor: adjust overall estimates using weekdaily

Pull Request - State: closed - Opened by chanshing 10 months ago

#46 - Feature: Step Timings

Pull Request - State: closed - Opened by aidanacquah 10 months ago - 1 comment

#45 - Facing Issues with CSV Files

Issue - State: closed - Opened by SrinivasChoudhury 10 months ago - 3 comments

#44 - docs: pypi-friendly instructions

Pull Request - State: closed - Opened by chanshing 11 months ago

#43 - docs: pypi-friendly urls

Pull Request - State: closed - Opened by chanshing 11 months ago

#42 - fix: QAt IndexError

Pull Request - State: closed - Opened by chanshing about 1 year ago

#41 - feat: stepcount-generate-commands

Pull Request - State: closed - Opened by chanshing about 1 year ago

#40 - Option: `--quiet` / `-q`

Pull Request - State: closed - Opened by chanshing about 1 year ago

#39 - feat: steps Q1, Q2, Q3 At

Pull Request - State: closed - Opened by chanshing about 1 year ago

#38 - Setup: bump actipy and pandas

Pull Request - State: closed - Opened by chanshing about 1 year ago

#37 - chore: SSL verbose=True, mininterval=5

Pull Request - State: closed - Opened by chanshing about 1 year ago

#36 - Workflows: Use tiny sample file for faster tests

Pull Request - State: closed - Opened by chanshing about 1 year ago

#35 - Performance improvements, minor bug fixes to dataloader

Pull Request - State: closed - Opened by chanshing about 1 year ago

#34 - Add support for zipped files

Issue - State: open - Opened by chanshing about 1 year ago - 2 comments

#33 - Failed to build wheel for hmmslearn

Issue - State: closed - Opened by steffenhartmeyer about 1 year ago - 2 comments

#32 - Feature add documentation

Pull Request - State: closed - Opened by aidanacquah about 1 year ago - 3 comments

#31 - Retrain model. Finish train.ipynb

Pull Request - State: closed - Opened by chanshing about 1 year ago

#30 - Retrain models after feature changes

Issue - State: closed - Opened by chanshing about 1 year ago