Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / OpenMS/pyopenms-docs issues and pull requests

#450 - Allow sphinx testing with other wheels.

Pull Request - State: closed - Opened by poshul about 2 months ago

#449 - doc enhancements

Pull Request - State: closed - Opened by cbielow about 2 months ago - 3 comments

#448 - Update conf.py version number and copyright

Pull Request - State: closed - Opened by poshul about 2 months ago

#447 - Revert "remove old pyqt code"

Pull Request - State: closed - Opened by timosachsenberg 3 months ago

#446 - Adding plt.show()

Pull Request - State: open - Opened by r-sayar 4 months ago - 2 comments
Labels: documentation, Review effort [1-5]: 1

#445 - Error when loading pyOpenMS libraries!

Issue - State: closed - Opened by LCLazari 4 months ago - 2 comments
Labels: bug

#444 - How to extract isotope EIC when using FeatureFinder () ?

Issue - State: closed - Opened by grimace9527 4 months ago - 9 comments
Labels: documentation

#443 - make copyright year dynamic

Pull Request - State: open - Opened by jcharkow 4 months ago - 2 comments
Labels: enhancement, documentation, Review effort [1-5]: 1

#442 - Tutorial enhancements

Pull Request - State: closed - Opened by cbielow 5 months ago - 8 comments

#441 - add code snipped on how to filter by native id

Issue - State: open - Opened by timosachsenberg 7 months ago
Labels: documentation

#440 - Prepare for OpenMS 3.2.0 release

Pull Request - State: closed - Opened by mr-c 7 months ago - 2 comments
Labels: documentation, Review effort [1-5]: 1

#439 - Question

Issue - State: open - Opened by chulexuexibiedebushihewo 7 months ago - 5 comments
Labels: documentation

#438 - Extract specific information from feature_map and matched to ConsensusMap

Issue - State: open - Opened by chulexuexibiedebushihewo 7 months ago - 1 comment
Labels: documentation

#437 - Get wrong MassTraceDetection results

Issue - State: open - Opened by xieyying 7 months ago - 17 comments
Labels: bug

#436 - add Tutorial on saving a subset of data (zoomed in 2D area)

Issue - State: open - Opened by timosachsenberg 8 months ago
Labels: documentation

#435 - correction charge in mzML file

Issue - State: open - Opened by neel-lab 8 months ago - 2 comments
Labels: documentation

#434 - Remove twitter icon

Pull Request - State: closed - Opened by timosachsenberg 9 months ago - 3 comments
Labels: enhancement, Review effort [1-5]: 1

#433 - Update peptides_proteins.rst

Pull Request - State: closed - Opened by Ayesha-Feroz 11 months ago

#432 - Update peptides_proteins.rst

Pull Request - State: closed - Opened by Ayesha-Feroz 11 months ago - 5 comments

#431 - Update OpenMS.svg

Pull Request - State: closed - Opened by poshul 11 months ago - 7 comments

#430 - openMS input files

Issue - State: closed - Opened by saassli21 almost 1 year ago - 1 comment
Labels: documentation

#429 - Bump readthedocs-sphinx-search from 0.3.1 to 0.3.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#428 - Bump tj-actions/changed-files from 35 to 41 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#427 - Update plotting tutorials

Pull Request - State: closed - Opened by matteopilz about 1 year ago - 1 comment

#426 - Spectramerger sprint

Pull Request - State: closed - Opened by KyowonJeong about 1 year ago - 7 comments

#425 - removed reference to isotopewavelet

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago

#424 - Update spectrum_normalization.rst

Pull Request - State: closed - Opened by Ayesha-Feroz about 1 year ago - 4 comments

#423 - Asking for some questions

Issue - State: closed - Opened by chulexuexibiedebushihewo about 1 year ago - 2 comments
Labels: documentation

#421 - Revisit and Add spectrum merger tutorial

Issue - State: closed - Opened by timosachsenberg about 1 year ago - 6 comments
Labels: documentation

#420 - Add spectrum filtering menu item

Issue - State: closed - Opened by timosachsenberg about 1 year ago - 2 comments
Labels: documentation, sprint candidate

#419 - Adduct detection tutorial

Pull Request - State: closed - Opened by axelwalter about 1 year ago

#418 - Expand spectrum normalization tutorial

Issue - State: closed - Opened by timosachsenberg about 1 year ago - 1 comment
Labels: documentation, sprint candidate

#417 - Update charge_isotope_deconvolution.rst

Pull Request - State: closed - Opened by poshul about 1 year ago

#416 - Add some tutorial on basic OpenSWATH chromatogram algorithms

Issue - State: open - Opened by timosachsenberg about 1 year ago
Labels: documentation, sprint candidate

#415 - choose binder instance able to run our notebooks

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago - 1 comment

#414 - DONT MERGE Master+ipynb

Pull Request - State: closed - Opened by poshul about 1 year ago - 6 comments

#413 - Update test-pr.yaml to use conda

Pull Request - State: closed - Opened by poshul about 1 year ago

#412 - Use stable pyopenms

Pull Request - State: closed - Opened by poshul about 1 year ago

#411 - Change in Isotope Pattern Generator

Issue - State: closed - Opened by dlon450 over 1 year ago - 5 comments
Labels: bug

#410 - Update ms_data.rst

Pull Request - State: closed - Opened by poshul over 1 year ago

#409 - Test notebooks action does not trigger correctly!!

Issue - State: open - Opened by jpfeuffer over 1 year ago
Labels: bug, CI/CD, critical

#408 - automatically add dev tag based on branch (RTD-only)

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago

#407 - add page on logging

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago

#406 - Update supported versions of python

Pull Request - State: closed - Opened by radusuciu over 1 year ago

#405 - Find a way to automatically update versions at release

Issue - State: open - Opened by jpfeuffer over 1 year ago - 2 comments
Labels: CI/CD

#404 - Documentation about Ionic mobility

Issue - State: open - Opened by PierreSnell over 1 year ago - 2 comments
Labels: documentation

#403 - add new-binderIntegration.gif

Pull Request - State: closed - Opened by Arslan-Siraj over 1 year ago

#402 - Update installation.rst

Pull Request - State: closed - Opened by Arslan-Siraj over 1 year ago

#401 - Update installation.rst for pyopenms

Pull Request - State: closed - Opened by KyowonJeong over 1 year ago

#400 - small change to py domain pandoc filter

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago - 2 comments

#399 - Convert References to html Links for ipynb

Pull Request - State: closed - Opened by matteopilz over 1 year ago - 11 comments

#398 - Update peptides_proteins.rst

Pull Request - State: closed - Opened by Ayesha-Feroz over 1 year ago - 1 comment

#397 - Fix MS consumer Code blocks

Issue - State: open - Opened by jpfeuffer over 1 year ago

#396 - Explicitly import pyOpenMS in the example python codes

Pull Request - State: closed - Opened by JeeH-K over 1 year ago - 3 comments

#395 - Wheel/Packages server is returning 503.

Issue - State: closed - Opened by PierreSnell over 1 year ago - 2 comments
Labels: bug

#394 - Update scoring_spectra_hyperscore.rst

Pull Request - State: closed - Opened by timosachsenberg over 1 year ago

#393 - create pyopenms logo

Issue - State: closed - Opened by timosachsenberg over 1 year ago - 2 comments

#392 - Revert "Update peptides_proteins.rst"

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago

#391 - Update peptides_proteins.rst

Pull Request - State: closed - Opened by Ayesha-Feroz over 1 year ago - 1 comment

#390 - Update peptides_proteins.rst

Pull Request - State: closed - Opened by timosachsenberg over 1 year ago - 5 comments

#389 - Update documentation issue or request template

Pull Request - State: closed - Opened by matteopilz over 1 year ago

#388 - Translate dataframes functions to cython

Issue - State: open - Opened by jpfeuffer over 1 year ago - 1 comment

#387 - Create Vector wrapper for PeptideIdentifications and ProteinIdentifications

Issue - State: open - Opened by jpfeuffer over 1 year ago - 1 comment
Labels: sprint candidate

#386 - Update postBuild to use or new nightly pyopenms name scheme

Pull Request - State: closed - Opened by timosachsenberg over 1 year ago - 5 comments

#385 - modify icon bar

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago

#384 - text for userguide subpage and uncollapse toc

Pull Request - State: closed - Opened by jpfeuffer over 1 year ago

#383 - interactive_plots.rst binder doesn't work because it runs out of memory

Issue - State: closed - Opened by timosachsenberg over 1 year ago - 2 comments
Labels: bug

#382 - Pydata theme notemplates

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago

#381 - Try pandoc 3.x for generating ipynbs

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago

#380 - Fix some code blocks

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago

#379 - Update requirements.txt

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago - 1 comment

#377 - Memory errors when exporting GNPS files

Issue - State: closed - Opened by wkindschuh almost 2 years ago - 19 comments
Labels: bug, sprint candidate

#376 - Update wrapping_workflows_new_classes.rst

Pull Request - State: closed - Opened by Ayesha-Feroz almost 2 years ago - 1 comment

#375 - Verbosity level

Issue - State: closed - Opened by PierreSnell almost 2 years ago - 1 comment
Labels: bug

#374 - Feature: Get variance from different experiements.

Issue - State: closed - Opened by PierreSnell almost 2 years ago - 2 comments
Labels: bug

#371 - Potential useful information to review and add to the readthedocs page - from learning unit 9

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 3 comments
Labels: sprint candidate

#370 - Potential useful information to review and add to the readthedocs page - from learning unit 7

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 3 comments
Labels: sprint candidate

#368 - Potential useful information to review and add to the readthedocs page - from learning unit 5

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 3 comments
Labels: sprint candidate

#367 - Potential useful information to review and add to the readthedocs page - from learning unit 4

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 2 comments
Labels: sprint candidate

#366 - Potential useful information to review and add to the readthedocs page - from learning unit 3

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 1 comment
Labels: sprint candidate

#364 - Add information on hyperscore from one of our past lectures

Issue - State: closed - Opened by timosachsenberg almost 2 years ago - 2 comments
Labels: sprint candidate

#362 - Name issue nightly pypi

Issue - State: closed - Opened by jpfeuffer almost 2 years ago - 13 comments
Labels: sprint candidate

#360 - formula notation not correct

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 10 comments
Labels: bug, documentation

#359 - :py:class: references look weird in ipynb notebooks

Issue - State: open - Opened by jpfeuffer almost 2 years ago - 1 comment
Labels: bug

#355 - Create new logo

Issue - State: closed - Opened by jpfeuffer almost 2 years ago - 8 comments

#354 - [FEATURE] First try with pydata theme

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago - 24 comments

#353 - Generate ipynb on-the-fly with postBuild

Issue - State: open - Opened by jpfeuffer almost 2 years ago

#348 - re-added requirements processing

Pull Request - State: closed - Opened by poshul almost 2 years ago

#347 - have versioned docs. I.e. a nice visible drop-down on the web interface such that people can switch from nightly to release

Issue - State: closed - Opened by poshul almost 2 years ago - 10 comments
Labels: documentation, sprint candidate

#342 - Confusion due to missing/invisible versioned docs

Issue - State: closed - Opened by jpfeuffer almost 2 years ago - 2 comments
Labels: bug

#339 - Add furo theme to pyopenms.readthedocs.io

Pull Request - State: closed - Opened by tapaswenipathak almost 2 years ago - 4 comments

#336 - test blacken

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago - 5 comments

#335 - test blacken

Pull Request - State: closed - Opened by jpfeuffer almost 2 years ago