OpenMS/contrib issues and pull requests

#146 - New release broke GHA pipelines

Issue - State: open - Opened by jpfeuffer 3 months ago - 3 comments
Labels: bug

#144 - use contrib sources from contrib-sources github release

Pull Request - State: closed - Opened by timosachsenberg 10 months ago - 6 comments

#143 - bump release action version

Pull Request - State: closed - Opened by poshul 10 months ago

#142 - manylinux update

Pull Request - State: closed - Opened by jpfeuffer 10 months ago

#141 - Update main.yml

Pull Request - State: closed - Opened by timosachsenberg 10 months ago

#140 - add manual contrib release step

Pull Request - State: closed - Opened by timosachsenberg 12 months ago - 5 comments

#139 - create release

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago

#138 - update eigen to 3.4.0

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago - 1 comment

#137 - docker: refactor manylinux Dockerfile

Pull Request - State: open - Opened by radusuciu about 1 year ago - 2 comments

#136 - Optimize Dockerfile

Pull Request - State: closed - Opened by radusuciu about 1 year ago - 7 comments

#133 - Timosachsenberg patch 2

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago - 1 comment

#132 - Fix/deploy docker

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago

#131 - Fix/deploy docker

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago

#130 - checkout repo to get context

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago

#129 - Docker actions broken after moving dockerfiles

Issue - State: closed - Opened by jpfeuffer almost 2 years ago - 12 comments
Labels: bug

#128 - remove OpenMS checkout from contrib

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago - 3 comments

#127 - update manylinux action

Pull Request - State: closed - Opened by timosachsenberg almost 2 years ago - 4 comments

#126 - Dockerfiles from OpenMS/dockerfiles have been moved to contrib/docker…

Pull Request - State: closed - Opened by KyowonJeong almost 2 years ago - 25 comments

#125 - Fix xerces icu

Pull Request - State: closed - Opened by cbielow about 2 years ago - 1 comment

#124 - Remove set-output from actions

Pull Request - State: closed - Opened by poshul about 2 years ago

#123 - Deploy docker image (ubuntu) to ghcr.io uses the deprecated "set-output" command

Issue - State: closed - Opened by poshul about 2 years ago - 1 comment

#122 - CoinOR config.guess not able to guess for newer OSes

Issue - State: open - Opened by jpfeuffer about 2 years ago

#121 - Do not use zstd/lzma in boost

Pull Request - State: closed - Opened by jpfeuffer about 2 years ago - 3 comments

#120 - Update deploy-manylinux-docker.yml

Pull Request - State: closed - Opened by poshul over 2 years ago

#119 - [FEATURE] Allow list of buildtypes

Pull Request - State: closed - Opened by jpfeuffer over 2 years ago

#118 - remove GLPK from default ALL target

Pull Request - State: closed - Opened by jpfeuffer over 2 years ago

#117 - [Restructure] Licenses and remove WM5 from ALL

Pull Request - State: closed - Opened by jpfeuffer over 2 years ago

#116 - Do NOT use manylinux Dockerfile here!

Issue - State: closed - Opened by jpfeuffer over 2 years ago - 8 comments
Labels: bug, sprint candidate

#115 - Trigger contrib submodule update in OpenMS

Issue - State: closed - Opened by timosachsenberg over 2 years ago - 1 comment

#114 - slimmer CoinMP package without the precompiled libs

Pull Request - State: closed - Opened by cbielow over 2 years ago - 2 comments

#113 - fix CoinOr to support VS2022

Pull Request - State: closed - Opened by cbielow over 2 years ago - 13 comments

#112 - Build boost without unnecessary thirdparties

Issue - State: closed - Opened by jpfeuffer almost 3 years ago
Labels: bug

#111 - [Update] boost and coinor for VS22

Pull Request - State: closed - Opened by Waschi97 almost 3 years ago - 5 comments

#110 - Feature/update cmake version

Pull Request - State: closed - Opened by timosachsenberg over 3 years ago

#109 - Build libomp dynamic

Pull Request - State: closed - Opened by oliveralka over 3 years ago - 1 comment

#108 - [ADD] openmp

Pull Request - State: closed - Opened by oliveralka over 3 years ago - 4 comments

#107 - [ADD] set zlib osx deployment target (cmake)

Pull Request - State: closed - Opened by oliveralka over 3 years ago - 4 comments

#106 - remove seqan 1 from contrib

Pull Request - State: closed - Opened by timosachsenberg almost 4 years ago - 2 comments

#105 - fix handling of free slacks

Pull Request - State: closed - Opened by bertrandboudaud almost 4 years ago - 1 comment

#104 - add seqan-c17

Pull Request - State: closed - Opened by jpfeuffer about 4 years ago

#103 - [FIX] Disable error for warnings in HDF5 under AppleClang12

Pull Request - State: closed - Opened by jpfeuffer about 4 years ago

#102 - Boost fails to build under macOS 10.15.6

Issue - State: closed - Opened by lars20070 over 4 years ago - 4 comments

#101 - Include the hdf5-config.cmake if generated

Issue - State: open - Opened by jpfeuffer over 4 years ago - 2 comments

#100 - [FIX] add boost patch for xcode 11.4

Pull Request - State: closed - Opened by jpfeuffer almost 5 years ago

#99 - [FEATURE] make xerces build with hidden symbols by default

Pull Request - State: closed - Opened by jpfeuffer almost 5 years ago

#98 - Fixed passing of macosx deployment target

Pull Request - State: closed - Opened by jpfeuffer almost 5 years ago

#97 - Only add architecture option if not a Win64 Generator

Pull Request - State: closed - Opened by jpfeuffer almost 5 years ago - 7 comments

#96 - quotes

Pull Request - State: closed - Opened by jpfeuffer almost 5 years ago - 1 comment

#95 - build fails on Windows for 2.5 Release

Issue - State: closed - Opened by hroest almost 5 years ago - 1 comment

#94 - Start using -A instead of the now deprecated Generator suffix

Pull Request - State: closed - Opened by jpfeuffer about 5 years ago - 3 comments

#93 - [FEATURE] GitHub actions

Pull Request - State: closed - Opened by jpfeuffer over 5 years ago - 3 comments

#92 - MacOS sysroot for Boost

Issue - State: open - Opened by jpfeuffer over 5 years ago
Labels: enhancement

#91 - [FEATURE] Boost 1.71 since 1.67 and 1.69 have compile problems on AppleClang 11

Pull Request - State: closed - Opened by jpfeuffer over 5 years ago

#90 - Eigen Fails to Install

Issue - State: closed - Opened by singjc over 5 years ago - 4 comments

#89 - [Update] boost to 1.67

Pull Request - State: closed - Opened by jpfeuffer over 5 years ago - 1 comment

#88 - Update Boost to allow VS2017 U3 and VS2019

Issue - State: closed - Opened by jpfeuffer over 5 years ago - 1 comment

#87 - [FIX] debug libs for hdf5

Pull Request - State: closed - Opened by hroest over 5 years ago - 2 comments

#86 - minor doc

Pull Request - State: closed - Opened by cbielow over 5 years ago

#85 - Discrepancy (CMakeLists.txt and source packages)

Issue - State: closed - Opened by oliveralka almost 6 years ago - 3 comments

#84 - Feature/hdf5

Pull Request - State: closed - Opened by hroest almost 6 years ago - 5 comments

#83 - Add proper CoinOR debug libs for VisualStudio 2017

Pull Request - State: closed - Opened by cbielow about 6 years ago - 6 comments

#82 - [FIX] Patch for compiler bug, mistaking < operator for template.

Pull Request - State: closed - Opened by jpfeuffer about 6 years ago - 2 comments

#81 - Seqan 1.4.1 not compilable with gcc 4.6 to 5.x

Issue - State: closed - Opened by jpfeuffer about 6 years ago - 1 comment
Labels: bug

#80 - [Feature] Retry download

Pull Request - State: closed - Opened by jpfeuffer over 6 years ago

#79 - Try to avoid ICU dependency through boost

Pull Request - State: closed - Opened by jpfeuffer over 6 years ago - 3 comments

#78 - Retry mechanism for the source downloads

Issue - State: closed - Opened by jpfeuffer over 6 years ago

#77 - [FEATURE] Check compiler version

Pull Request - State: closed - Opened by jpfeuffer over 6 years ago - 1 comment

#76 - Add ICU as requirement or additional contrib

Issue - State: closed - Opened by jpfeuffer over 6 years ago - 3 comments

#75 - Windows: check consistency of cl.exe and Generator

Pull Request - State: closed - Opened by cbielow over 6 years ago - 1 comment

#74 - contrib builds boost in 32 bit instead of 64 bit

Issue - State: closed - Opened by Vikash-N over 6 years ago - 8 comments

#73 - [Feature] Enable Boost system and thread

Pull Request - State: closed - Opened by jpfeuffer almost 7 years ago - 1 comment

#72 - [FIX] fix zlib rpath on Mac right after build

Pull Request - State: closed - Opened by jpfeuffer almost 7 years ago - 1 comment

#71 - [Update] zlib 1.2.11

Pull Request - State: closed - Opened by jpfeuffer almost 7 years ago - 3 comments

#70 - [FIX] linux fix

Pull Request - State: closed - Opened by hroest almost 7 years ago - 4 comments

#69 - SQLite fails to build on CentOS

Issue - State: closed - Opened by hroest almost 7 years ago - 1 comment

#68 - [FIX] Redhat cmake installs to lib64 by default

Pull Request - State: closed - Opened by jpfeuffer almost 7 years ago - 1 comment

#67 - cannot find xerces lib

Issue - State: closed - Opened by hroest almost 7 years ago - 3 comments
Labels: bug

#66 - [FIX] Disable network support and add fpic to Xerces

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago

#65 - [HOTFIX] Confused lib and bin dir in zlib. Needs to be the other way round!

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago

#64 - [FEATURE] Added default support for static sqlite on win.

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago

#63 - [FEATURE] Update Xerces to 3.2 with CMake buildsystem

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago - 5 comments

#62 - Modify patch to zlib CMakeLists to set the location for dlls to bin on win

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago - 1 comment

#61 - zlib installs dlls into lib folder

Issue - State: closed - Opened by jpfeuffer about 7 years ago - 2 comments
Labels: bug

#60 - Eigen patch fails

Issue - State: closed - Opened by hroest about 7 years ago - 3 comments

#59 - update minimum cmake and c11 version

Pull Request - State: closed - Opened by timosachsenberg about 7 years ago

#58 - [FIX] set minor compiler version number to zero if none is provided

Pull Request - State: closed - Opened by timosachsenberg about 7 years ago - 2 comments

#57 - Feature/update eigen

Pull Request - State: closed - Opened by timosachsenberg about 7 years ago - 7 comments

#56 - [FIX] Let CoinOR also use the sysroot flag if given.

Pull Request - State: closed - Opened by jpfeuffer about 7 years ago