Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenMS/OpenMS issues and pull requests
#7098 - [FIX] DatabaseName element in MzIdentMLDOMHandler.cpp
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 2 comments
#7097 - IDFileConverter: Unexpected internal error (Could not convert string '' to a double value)
Issue -
State: closed - Opened by elrubio about 1 year ago
- 5 comments
#7096 - ProteaseDigestion looses a tryptic peptide contained in a bigger tryptic peptide
Issue -
State: closed - Opened by Roman-Si about 1 year ago
- 3 comments
#7095 - [ProteomicsLFQ] Parameterize min. proportion for requant.
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
#7094 - make UBSan errors to fail tests
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7093 - SageAdapter fixes
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 4 comments
#7092 - libqt5core is missing from the image
Issue -
State: open - Opened by shubham1637 about 1 year ago
- 9 comments
#7091 - Bump THIRDPARTY from `402992f` to `a3e6ffb`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#7090 - Keep main score in PercolatorAdapter
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 7 comments
#7089 - fix ASAN bug in MapAlignmentAlgorithmIdentification.h
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7088 - Expand EICExtractor
Issue -
State: closed - Opened by timosachsenberg about 1 year ago
- 50 comments
Labels: beginner tasks
#7087 - UBSan fixes
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7086 - Update SemanticValidator.h
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7085 - Fix asan bug in SageAdapter.cpp
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7084 - add mandatory context message to Exception::InvalidSize
Issue -
State: open - Opened by cbielow about 1 year ago
Labels: sprint candidate
#7083 - add SpectraMerger tests
Issue -
State: open - Opened by cbielow about 1 year ago
Labels: sprint candidate
#7082 - SpectraMerger: fix empty ms-levels which lead to exception
Pull Request -
State: closed - Opened by cbielow about 1 year ago
#7081 - Update AddressSanitizer.cmake
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7080 - expose error in ResidueDB code
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7079 - Prot quant comment lines
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7078 - [doc] ProteomicsLFQ.cpp
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7077 - include UndefinedBehaviorSanitizer
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 5 comments
#7076 - restore TOPPAS tutorial
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7075 - Bump contrib from `04d64c6` to `69e61f2`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#7074 - fix some remaining occurances of util
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7073 - rename some of the old UTIL tests to TOPP tests
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7072 - fix ProteinQuantifier
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 3 comments
#7071 - update Deisotoper python documentation and throw exception for unrealistic tolerances
Issue -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
Labels: sprint candidate
#7070 - fixes bug in string conversion
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7069 - FeatureFinderMetaboIdent seems to add a proton to input molecular formulas
Issue -
State: open - Opened by YasinEl about 1 year ago
- 5 comments
#7068 - Update Main.doxygen
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7067 - Switch to SPDX license format
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7066 - Does OpenMS support the deconvolution of sparse labeling C13 or N15 peptide mass spectrum?
Issue -
State: open - Opened by YiqingElroy about 1 year ago
- 3 comments
#7065 - fix #7051 (repairs #7035)
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7064 - make internal calibration plots more robust
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7063 - [FIX] Sage charge states and spec refs and general spec ref handling
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
#7062 - Inconsistent behavior in DeistopeAndSingleCharge function
Issue -
State: closed - Opened by birdday about 1 year ago
- 6 comments
Labels: bug
#7061 - CSV File reader does not support comment lines
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 11 comments
Labels: major, beginner tasks, sprint candidate
#7060 - Dangling reference to a temporary in OSMFileStore
Issue -
State: open - Opened by SGSSGene about 1 year ago
- 2 comments
#7059 - MzTab crashes in PLFQ if experimental design is not given
Issue -
State: closed - Opened by jonasscheid about 1 year ago
- 7 comments
#7058 - Remove BOOST_USE_STATIC
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 2 comments
#7057 - Move FDR, IDFilter and IDRipping into ProteomicsLFQ?
Issue -
State: open - Opened by jpfeuffer about 1 year ago
#7056 - GHA Upload of docs missing
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 3 comments
Labels: CI, sprint candidate
#7055 - GHA Clang matrix branch is using GCC
Issue -
State: open - Opened by jpfeuffer about 1 year ago
Labels: CI, bug
#7054 - GHA and Jenkins overwriting each other
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 3 comments
Labels: critical, CI
#7053 - [FIX] PercolatorInfile reading even more
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
#7052 - [FIX] CoarseIsotope generation
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 1 comment
#7051 - Compilation on g++ < 8 broken due to filesystem header
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 2 comments
Labels: blocker
#7050 - macOS ARM CI for conda
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 3 comments
Labels: CI
#7049 - fix ARM64 compile error
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 3 comments
#7048 - SIMD nightly build errors on macOS ARM
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 4 comments
Labels: blocker
#7047 - GHA Fix Win Thirdparty
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
Labels: NoJenkins
#7046 - Update openms_ci_matrix_full.yml
Pull Request -
State: closed - Opened by poshul about 1 year ago
#7045 - SageAdapter not tested on Windows
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
#7044 - Fix PercolatorInfile loading
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 2 comments
#7043 - SageAdapter reading Percolator output error
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 4 comments
#7042 - Update openms_ci_matrix_full.yml
Pull Request -
State: closed - Opened by poshul about 1 year ago
- 3 comments
#7041 - SageAdapter min and max_peaks settings not passed through
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
#7040 - SageAdapter does not find anything on BSA
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 8 comments
#7039 - Test and add documentation for new pkg installer on macOS
Issue -
State: open - Opened by jpfeuffer about 1 year ago
#7038 - Bump src/pyOpenMS/pyopenms-docs from `0d5e4f3` to `b44adfe`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#7037 - Dockerfile heavily outdated
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 1 comment
#7036 - [ProteomicsLFQ] allow non-probabilistic scores for basic inference
Pull Request -
State: open - Opened by jpfeuffer about 1 year ago
- 3 comments
#7035 - [FEATURE] add reporting for read/write speed for mzML
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7034 - [SageAdapter] Pass threads param as (file) batch_size
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 6 comments
#7033 - SageAdapter documentation lacking
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 5 comments
#7032 - Searchengine parameter names not agreeing
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 8 comments
#7031 - SageAdapter does not pass threads
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 5 comments
#7030 - Require Qt5.11+?
Issue -
State: open - Opened by jpfeuffer about 1 year ago
- 1 comment
#7029 - abibuilder8 not working for a long long time
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 5 comments
Labels: critical
#7028 - Building packages with the new Matrix based Github actions CI doesn't work.
Issue -
State: closed - Opened by poshul about 1 year ago
- 24 comments
#7027 - Poshul test package
Pull Request -
State: closed - Opened by poshul about 1 year ago
- 4 comments
Labels: NoJenkins, internal
#7026 - nightly OpenMS documentation seems to have issues (not updated?)
Issue -
State: closed - Opened by timosachsenberg about 1 year ago
- 5 comments
Labels: critical
#7025 - More SIMD/SSE2: removeWhitespace
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7024 - Full multijob matrix gha
Pull Request -
State: closed - Opened by poshul about 1 year ago
- 3 comments
Labels: NoJenkins
#7023 - Bump contrib from `1240564` to `04d64c6`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#7022 - Report active ISA extensions
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 3 comments
#7021 - add option to filter spectra by peptide
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7020 - IDFilter: KeepBestPerPeptide available via pyopenms but not as CLI flag in IDFilter
Issue -
State: closed - Opened by jonasscheid about 1 year ago
- 3 comments
#7019 - [cleanup] removed EnzymaticDigestionLogModel
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7018 - Fixed broken / deprecated link
Pull Request -
State: closed - Opened by matteopilz about 1 year ago
#7017 - fix neon flags (not needed)
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 6 comments
#7016 - [cleanup] remove linear mapping PIP
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7015 - [cleanup] remove DocumentIDTagger and IDPool from share
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7014 - remove errorstring from XMLHandler.pxd
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7013 - Fix_sage
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7012 - make idxml user parameter output deterministic
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7011 - [FIX] mzML threading issue
Pull Request -
State: closed - Opened by cbielow about 1 year ago
- 1 comment
#7010 - MapAlignerPoseClustering can crash with mzML files
Issue -
State: open - Opened by axelwalter about 1 year ago
- 1 comment
#7009 - [cleanup] remove FIDOAdapter
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7008 - loadExperiment crashes
Issue -
State: closed - Opened by uweschmitt about 1 year ago
- 17 comments
#7007 - FeatureFinderMultiplex meets bad_alloc problems
Issue -
State: open - Opened by liuzy2008 about 1 year ago
- 1 comment
#7006 - Fatal Error When Packaging with Pyinstaller
Issue -
State: closed - Opened by lingjunli-research about 1 year ago
- 11 comments
#7005 - Update openms_clang_format.yml
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
Labels: NoJenkins
#7004 - remove tool also from KNIME packaging
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7003 - [Feature] IDPEP p-values
Pull Request -
State: open - Opened by jpfeuffer about 1 year ago
- 1 comment
#7002 - Get rid of dependency on C compilers
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 1 comment
#7001 - [discussion] remove utils and model as topp tool with utilities category
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 6 comments
#7000 - SiriusAdapter fails in OpenMS 3.0
Issue -
State: open - Opened by bernt-matthias about 1 year ago
- 11 comments
#6999 - [cleanup] remove CompNovo
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment