Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / OpenMS/OpenMS issues and pull requests

#7193 - Update openms_ci_matrix_full.yml

Pull Request - State: closed - Opened by poshul 11 months ago - 12 comments
Labels: NoJenkins

#7192 - Win installer: check for correct NSIS version

Pull Request - State: closed - Opened by cbielow 11 months ago - 1 comment

#7191 - Feature/includes

Pull Request - State: closed - Opened by hroest 11 months ago

#7190 - [GHA] use custom NSIS for Windows installer

Pull Request - State: closed - Opened by cbielow 11 months ago - 4 comments

#7189 - Fix win installer

Pull Request - State: closed - Opened by cbielow 11 months ago - 2 comments

#7189 - Fix win installer

Pull Request - State: closed - Opened by cbielow 11 months ago - 2 comments

#7188 - Expose MetaboliteAdductDecharger functionality in pyOpenMS

Issue - State: closed - Opened by timosachsenberg 11 months ago - 2 comments

#7187 - Ontology based tool annotation

Issue - State: open - Opened by bernt-matthias 11 months ago - 2 comments

#7186 - [CLEANUP] remove unused and outdated wavelet code

Pull Request - State: closed - Opened by timosachsenberg 11 months ago - 4 comments

#7185 - rename peakpickermrm to peakpickerchromatogram

Pull Request - State: closed - Opened by timosachsenberg 11 months ago

#7184 - fix some compile warnings and add sage citation

Pull Request - State: closed - Opened by timosachsenberg 11 months ago

#7183 - [DOC] Annotate SpectraFilter tools

Pull Request - State: closed - Opened by cbielow 11 months ago

#7182 - SageAdapter crashes

Issue - State: open - Opened by cbielow 11 months ago - 2 comments

#7181 - suggestion: rename PeakPickerMRM to PeakPickerChromatogram

Issue - State: closed - Opened by timosachsenberg 11 months ago - 2 comments

#7180 - ParamEditor: Move getting-tags-part to avoid error from a node (subsection param)

Pull Request - State: closed - Opened by JeeH-K 11 months ago - 3 comments

#7179 - Bump src/pyOpenMS/pyopenms-docs from `4bc75aa` to `64016e7`

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#7178 - IdentificationData bug

Issue - State: closed - Opened by cbielow 11 months ago - 3 comments

#7177 - EICExtractor use trapezoid integration

Pull Request - State: closed - Opened by timosachsenberg 11 months ago

#7176 - [FIX] make FileConverter more robust

Pull Request - State: closed - Opened by cbielow 11 months ago

#7175 - Fix PyPi Publish Warnings

Pull Request - State: closed - Opened by matteopilz 11 months ago - 2 comments

#7174 - Update python_versions.json to rotate with 3.12

Pull Request - State: closed - Opened by jpfeuffer 11 months ago - 4 comments

#7173 - Bump src/pyOpenMS/pyopenms-docs from `b44adfe` to `4bc75aa`

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#7172 - fix compile error in MzQCFile.cpp for clang11(linux)

Pull Request - State: closed - Opened by cbielow 11 months ago

#7170 - update mascot test file

Pull Request - State: closed - Opened by timosachsenberg 11 months ago

#7169 - Only load MS1 in EICExtractor

Pull Request - State: closed - Opened by timosachsenberg 11 months ago
Labels: hacktoberfest-accepted

#7168 - PeakFileOptions should not be set as member of FileHandler

Issue - State: open - Opened by timosachsenberg 11 months ago - 2 comments

#7168 - PeakFileOptions should not be set as member of FileHandler

Issue - State: open - Opened by timosachsenberg 11 months ago - 2 comments

#7167 - Bump THIRDPARTY from `e492568` to `947b56a`

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#7166 - Bump contrib from `3d8710c` to `69e61f2`

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#7165 - IsobaricQuantifier MS2/3 error handling

Issue - State: open - Opened by jpfeuffer 11 months ago - 1 comment

#7165 - IsobaricQuantifier MS2/3 error handling

Issue - State: open - Opened by jpfeuffer 11 months ago - 1 comment

#7164 - Fix mascot thirdparty test

Issue - State: closed - Opened by timosachsenberg 11 months ago - 1 comment

#7163 - Fix some bugs and warnings

Pull Request - State: closed - Opened by cbielow 11 months ago

#7163 - Fix some bugs and warnings

Pull Request - State: closed - Opened by cbielow 11 months ago

#7162 - FLASHDeconvWizard: runnning fails

Issue - State: closed - Opened by JeeH-K 11 months ago

#7162 - FLASHDeconvWizard: runnning fails

Issue - State: open - Opened by JeeH-K 11 months ago

#7161 - Fix ubuntu wheels test

Pull Request - State: closed - Opened by matteopilz 11 months ago

#7160 - Add more tests for FLASHDeconv

Pull Request - State: open - Opened by bernt-matthias 11 months ago - 15 comments

#7159 - fix: xvfb not starting when xvfb is already running

Pull Request - State: closed - Opened by SGSSGene 11 months ago - 3 comments

#7158 - improve tool descriptions (slightly)

Pull Request - State: closed - Opened by bernt-matthias 11 months ago

#7157 - Feat/check for duplicate options

Pull Request - State: open - Opened by SGSSGene 11 months ago - 1 comment

#7156 - [INFO] OpenMSInfo: report which ILP lib we use

Pull Request - State: closed - Opened by cbielow 11 months ago

#7155 - [FIX] MSFragger: relative path to database

Pull Request - State: closed - Opened by cbielow 11 months ago

#7154 - Remove duplicate option names

Pull Request - State: closed - Opened by SGSSGene 11 months ago

#7153 - [FIX] mzIdentML improvements (cvParam parsing and more)

Pull Request - State: closed - Opened by cbielow 11 months ago - 2 comments

#7152 - MSFragger does not work with relative pathnames

Issue - State: closed - Opened by bernt-matthias 11 months ago - 1 comment

#7151 - MetaboliteAdductDecharger - multimer annotation

Issue - State: open - Opened by YasinEl 11 months ago - 7 comments

#7150 - Core dump for AssayGeneratorMetabo

Issue - State: open - Opened by bernt-matthias 11 months ago - 10 comments

#7149 - Core dump for dechargers

Issue - State: open - Opened by bernt-matthias 11 months ago - 11 comments

#7148 - remove remnant CompNovo test data

Pull Request - State: closed - Opened by bernt-matthias 11 months ago

#7146 - Release/3.1.0

Pull Request - State: closed - Opened by timosachsenberg 11 months ago

#7144 - Fix a few AddressSanitizer complaints due to uninitialized variables

Pull Request - State: closed - Opened by enetz 12 months ago

#7143 - Windows installer hangs when installing VS runtime

Issue - State: closed - Opened by cbielow 12 months ago - 8 comments

#7142 - FlashDeconv: add citation to TOPP tool and more docs

Pull Request - State: closed - Opened by cbielow 12 months ago

#7141 - Update executables.cmake

Pull Request - State: closed - Opened by Arslan-Siraj 12 months ago

#7140 - disable failing SIRIUS tests

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7139 - [FEATURE] TOPPAS: search tools by name

Pull Request - State: closed - Opened by cbielow 12 months ago - 1 comment

#7138 - sync

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7137 - sync with develop

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7136 - disable rsync

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7134 - fix FlashDeconv docu (missing parameters)

Pull Request - State: closed - Opened by cbielow 12 months ago

#7133 - [code reading and commenting practice] SimpleSearchEngineAlgorithm.cpp

Pull Request - State: closed - Opened by Ayesha-Feroz 12 months ago - 1 comment

#7132 - Fix TOPP categories and make OpenMSInfo a TOPP tool

Pull Request - State: closed - Opened by cbielow 12 months ago - 1 comment

#7131 - Read RT back in minutes in percolator in file

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7130 - [FFID][tweak] thoughts on settings/scores

Pull Request - State: open - Opened by jpfeuffer 12 months ago - 8 comments

#7129 - [mzIdentML] fall back to name element for DatabaseName

Pull Request - State: closed - Opened by jpfeuffer 12 months ago - 1 comment

#7128 - [ByGHAction] Updated OpenMS package version numbers

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago

#7127 - Ini files have duplicate option names

Issue - State: closed - Opened by SGSSGene 12 months ago - 2 comments

#7126 - Newly created folders in build archive no accessible

Issue - State: closed - Opened by poshul 12 months ago - 5 comments
Labels: blocker

#7125 - Version number of .TOPPAS files in tests not updated automatically on new release

Issue - State: open - Opened by poshul 12 months ago - 3 comments
Labels: minor, sprint candidate

#7124 - TOPP_ProteomicsLFQ_10 out tests failing on windows in CI

Issue - State: closed - Opened by poshul 12 months ago - 1 comment
Labels: sprint candidate

#7123 - Release checklist for 3.2.0

Issue - State: open - Opened by poshul 12 months ago - 16 comments

#7122 - Update INIUpdater_1_noupdate.toppas to output correct version

Pull Request - State: closed - Opened by poshul 12 months ago - 1 comment

#7121 - removed unstable (SVM) tests

Pull Request - State: closed - Opened by timosachsenberg 12 months ago

#7120 - remove uniqueToProt from mascot psm features

Pull Request - State: closed - Opened by jonasscheid 12 months ago

#7119 - InternalCalibration fails due to SageAdapter's idXML files storing RT as minutes

Issue - State: closed - Opened by elrubio 12 months ago - 22 comments
Labels: blocker, sprint candidate

#7117 - q-value based filtering of features in PLFQ

Pull Request - State: closed - Opened by timosachsenberg 12 months ago - 1 comment

#7116 - [code reading practice]Update Tagger.cpp

Pull Request - State: closed - Opened by Ayesha-Feroz 12 months ago - 2 comments

#7115 - add column for area output

Pull Request - State: closed - Opened by timosachsenberg 12 months ago - 1 comment

#7114 - [HOTFIX][PIN files] wrong mz loading

Pull Request - State: closed - Opened by jpfeuffer 12 months ago - 3 comments

#7112 - SageAdapter: No accession found

Issue - State: open - Opened by elrubio 12 months ago - 1 comment

#7111 - Wrong m/z calculation when loading sage/percolator files

Issue - State: closed - Opened by elrubio 12 months ago - 3 comments
Labels: blocker

#7110 - update changelog helper for 2023

Pull Request - State: closed - Opened by mr-c 12 months ago - 1 comment

#7109 - readded HTML tutorial parts

Pull Request - State: closed - Opened by poshul 12 months ago - 1 comment

#7108 - Update SIMDe to 2023-10-02 snapshot of 0.7.7

Pull Request - State: closed - Opened by mr-c 12 months ago

#7107 - Update CHANGELOG

Pull Request - State: closed - Opened by timosachsenberg 12 months ago
Labels: hacktoberfest-accepted

#7106 - SAGe updated restricted to null

Pull Request - State: closed - Opened by ypriverol almost 1 year ago

#7105 - [FIX][SageAdapter] Use `restrict: null`

Pull Request - State: closed - Opened by jpfeuffer almost 1 year ago - 1 comment

#7104 - bring back OpenMS dev tutorial

Issue - State: closed - Opened by cbielow about 1 year ago

#7102 - SageAdapter option to keep json as debug output

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago

#7101 - Deisotope Fragment Tolerance Exception

Pull Request - State: closed - Opened by matteopilz about 1 year ago - 3 comments

#7100 - Update SageAdapter.cpp

Pull Request - State: closed - Opened by timosachsenberg about 1 year ago

#7099 - MzIdentML parser error for DatabaseName/userParam

Issue - State: closed - Opened by elrubio about 1 year ago - 2 comments