Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenMS/OpenMS issues and pull requests
#7193 - Update openms_ci_matrix_full.yml
Pull Request -
State: closed - Opened by poshul 11 months ago
- 12 comments
Labels: NoJenkins
#7192 - Win installer: check for correct NSIS version
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 1 comment
#7191 - Feature/includes
Pull Request -
State: closed - Opened by hroest 11 months ago
#7190 - [GHA] use custom NSIS for Windows installer
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 4 comments
#7189 - Fix win installer
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 2 comments
#7189 - Fix win installer
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 2 comments
#7188 - Expose MetaboliteAdductDecharger functionality in pyOpenMS
Issue -
State: closed - Opened by timosachsenberg 11 months ago
- 2 comments
#7187 - Ontology based tool annotation
Issue -
State: open - Opened by bernt-matthias 11 months ago
- 2 comments
#7186 - [CLEANUP] remove unused and outdated wavelet code
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
- 4 comments
#7185 - rename peakpickermrm to peakpickerchromatogram
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
#7184 - fix some compile warnings and add sage citation
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
#7183 - [DOC] Annotate SpectraFilter tools
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7182 - SageAdapter crashes
Issue -
State: open - Opened by cbielow 11 months ago
- 2 comments
#7181 - suggestion: rename PeakPickerMRM to PeakPickerChromatogram
Issue -
State: closed - Opened by timosachsenberg 11 months ago
- 2 comments
#7180 - ParamEditor: Move getting-tags-part to avoid error from a node (subsection param)
Pull Request -
State: closed - Opened by JeeH-K 11 months ago
- 3 comments
#7179 - Bump src/pyOpenMS/pyopenms-docs from `4bc75aa` to `64016e7`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#7178 - IdentificationData bug
Issue -
State: closed - Opened by cbielow 11 months ago
- 3 comments
#7177 - EICExtractor use trapezoid integration
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
#7176 - [FIX] make FileConverter more robust
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7175 - Fix PyPi Publish Warnings
Pull Request -
State: closed - Opened by matteopilz 11 months ago
- 2 comments
#7174 - Update python_versions.json to rotate with 3.12
Pull Request -
State: closed - Opened by jpfeuffer 11 months ago
- 4 comments
#7173 - Bump src/pyOpenMS/pyopenms-docs from `b44adfe` to `4bc75aa`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#7172 - fix compile error in MzQCFile.cpp for clang11(linux)
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7171 - TOPP_IsobaricAnalyzer_MS3TMT10Plex_1_out1 failed in ARM64
Issue -
State: open - Opened by sagitter 11 months ago
#7170 - update mascot test file
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
#7169 - Only load MS1 in EICExtractor
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
Labels: hacktoberfest-accepted
#7168 - PeakFileOptions should not be set as member of FileHandler
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 2 comments
#7168 - PeakFileOptions should not be set as member of FileHandler
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 2 comments
#7167 - Bump THIRDPARTY from `e492568` to `947b56a`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#7166 - Bump contrib from `3d8710c` to `69e61f2`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#7165 - IsobaricQuantifier MS2/3 error handling
Issue -
State: open - Opened by jpfeuffer 11 months ago
- 1 comment
#7165 - IsobaricQuantifier MS2/3 error handling
Issue -
State: open - Opened by jpfeuffer 11 months ago
- 1 comment
#7164 - Fix mascot thirdparty test
Issue -
State: closed - Opened by timosachsenberg 11 months ago
- 1 comment
#7163 - Fix some bugs and warnings
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7163 - Fix some bugs and warnings
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7162 - FLASHDeconvWizard: runnning fails
Issue -
State: closed - Opened by JeeH-K 11 months ago
#7162 - FLASHDeconvWizard: runnning fails
Issue -
State: open - Opened by JeeH-K 11 months ago
#7161 - Fix ubuntu wheels test
Pull Request -
State: closed - Opened by matteopilz 11 months ago
#7160 - Add more tests for FLASHDeconv
Pull Request -
State: open - Opened by bernt-matthias 11 months ago
- 15 comments
#7159 - fix: xvfb not starting when xvfb is already running
Pull Request -
State: closed - Opened by SGSSGene 11 months ago
- 3 comments
#7158 - improve tool descriptions (slightly)
Pull Request -
State: closed - Opened by bernt-matthias 11 months ago
#7157 - Feat/check for duplicate options
Pull Request -
State: open - Opened by SGSSGene 11 months ago
- 1 comment
#7156 - [INFO] OpenMSInfo: report which ILP lib we use
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7155 - [FIX] MSFragger: relative path to database
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7154 - Remove duplicate option names
Pull Request -
State: closed - Opened by SGSSGene 11 months ago
#7153 - [FIX] mzIdentML improvements (cvParam parsing and more)
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 2 comments
#7152 - MSFragger does not work with relative pathnames
Issue -
State: closed - Opened by bernt-matthias 11 months ago
- 1 comment
#7151 - MetaboliteAdductDecharger - multimer annotation
Issue -
State: open - Opened by YasinEl 11 months ago
- 7 comments
#7150 - Core dump for AssayGeneratorMetabo
Issue -
State: open - Opened by bernt-matthias 11 months ago
- 10 comments
#7149 - Core dump for dechargers
Issue -
State: open - Opened by bernt-matthias 11 months ago
- 11 comments
#7148 - remove remnant CompNovo test data
Pull Request -
State: closed - Opened by bernt-matthias 11 months ago
#7147 - Fix MzQuantMLHandler error when <Modification> element has no "massDelta" attribute)
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7146 - Release/3.1.0
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
#7145 - MzQuantMLHandler error when <Modification> element has no "massDelta" attribute
Issue -
State: closed - Opened by elrubio 12 months ago
- 3 comments
#7144 - Fix a few AddressSanitizer complaints due to uninitialized variables
Pull Request -
State: closed - Opened by enetz 12 months ago
#7143 - Windows installer hangs when installing VS runtime
Issue -
State: closed - Opened by cbielow 12 months ago
- 8 comments
#7142 - FlashDeconv: add citation to TOPP tool and more docs
Pull Request -
State: closed - Opened by cbielow 12 months ago
#7141 - Update executables.cmake
Pull Request -
State: closed - Opened by Arslan-Siraj 12 months ago
#7140 - disable failing SIRIUS tests
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7139 - [FEATURE] TOPPAS: search tools by name
Pull Request -
State: closed - Opened by cbielow 12 months ago
- 1 comment
#7138 - sync
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7137 - sync with develop
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7136 - disable rsync
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7135 - some experiments regarding the imputation step in elutionmodelfitter
Pull Request -
State: open - Opened by timosachsenberg 12 months ago
#7134 - fix FlashDeconv docu (missing parameters)
Pull Request -
State: closed - Opened by cbielow 12 months ago
#7133 - [code reading and commenting practice] SimpleSearchEngineAlgorithm.cpp
Pull Request -
State: closed - Opened by Ayesha-Feroz 12 months ago
- 1 comment
#7132 - Fix TOPP categories and make OpenMSInfo a TOPP tool
Pull Request -
State: closed - Opened by cbielow 12 months ago
- 1 comment
#7131 - Read RT back in minutes in percolator in file
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7130 - [FFID][tweak] thoughts on settings/scores
Pull Request -
State: open - Opened by jpfeuffer 12 months ago
- 8 comments
#7129 - [mzIdentML] fall back to name element for DatabaseName
Pull Request -
State: closed - Opened by jpfeuffer 12 months ago
- 1 comment
#7128 - [ByGHAction] Updated OpenMS package version numbers
Pull Request -
State: closed - Opened by github-actions[bot] 12 months ago
#7127 - Ini files have duplicate option names
Issue -
State: closed - Opened by SGSSGene 12 months ago
- 2 comments
#7126 - Newly created folders in build archive no accessible
Issue -
State: closed - Opened by poshul 12 months ago
- 5 comments
Labels: blocker
#7125 - Version number of .TOPPAS files in tests not updated automatically on new release
Issue -
State: open - Opened by poshul 12 months ago
- 3 comments
Labels: minor, sprint candidate
#7124 - TOPP_ProteomicsLFQ_10 out tests failing on windows in CI
Issue -
State: closed - Opened by poshul 12 months ago
- 1 comment
Labels: sprint candidate
#7123 - Release checklist for 3.2.0
Issue -
State: open - Opened by poshul 12 months ago
- 16 comments
#7122 - Update INIUpdater_1_noupdate.toppas to output correct version
Pull Request -
State: closed - Opened by poshul 12 months ago
- 1 comment
#7121 - removed unstable (SVM) tests
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
#7120 - remove uniqueToProt from mascot psm features
Pull Request -
State: closed - Opened by jonasscheid 12 months ago
#7119 - InternalCalibration fails due to SageAdapter's idXML files storing RT as minutes
Issue -
State: closed - Opened by elrubio 12 months ago
- 22 comments
Labels: blocker, sprint candidate
#7118 - MASCOT:uniqueToProt is added by PSMFeatureExtractor but can potentially leak td-information
Issue -
State: closed - Opened by jonasscheid 12 months ago
- 1 comment
#7117 - q-value based filtering of features in PLFQ
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
- 1 comment
#7116 - [code reading practice]Update Tagger.cpp
Pull Request -
State: closed - Opened by Ayesha-Feroz 12 months ago
- 2 comments
#7115 - add column for area output
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
- 1 comment
#7114 - [HOTFIX][PIN files] wrong mz loading
Pull Request -
State: closed - Opened by jpfeuffer 12 months ago
- 3 comments
#7113 - make mzData more robust against wrong 'length' attributes for binary data
Pull Request -
State: closed - Opened by cbielow 12 months ago
#7112 - SageAdapter: No accession found
Issue -
State: open - Opened by elrubio 12 months ago
- 1 comment
#7111 - Wrong m/z calculation when loading sage/percolator files
Issue -
State: closed - Opened by elrubio 12 months ago
- 3 comments
Labels: blocker
#7110 - update changelog helper for 2023
Pull Request -
State: closed - Opened by mr-c 12 months ago
- 1 comment
#7109 - readded HTML tutorial parts
Pull Request -
State: closed - Opened by poshul 12 months ago
- 1 comment
#7108 - Update SIMDe to 2023-10-02 snapshot of 0.7.7
Pull Request -
State: closed - Opened by mr-c 12 months ago
#7107 - Update CHANGELOG
Pull Request -
State: closed - Opened by timosachsenberg 12 months ago
Labels: hacktoberfest-accepted
#7106 - SAGe updated restricted to null
Pull Request -
State: closed - Opened by ypriverol almost 1 year ago
#7105 - [FIX][SageAdapter] Use `restrict: null`
Pull Request -
State: closed - Opened by jpfeuffer almost 1 year ago
- 1 comment
#7104 - bring back OpenMS dev tutorial
Issue -
State: closed - Opened by cbielow about 1 year ago
#7103 - add option to extract decoy features in FFID, filter by feature score in ProteomicsLFQ
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
- 1 comment
#7102 - SageAdapter option to keep json as debug output
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7101 - Deisotope Fragment Tolerance Exception
Pull Request -
State: closed - Opened by matteopilz about 1 year ago
- 3 comments
#7100 - Update SageAdapter.cpp
Pull Request -
State: closed - Opened by timosachsenberg about 1 year ago
#7099 - MzIdentML parser error for DatabaseName/userParam
Issue -
State: closed - Opened by elrubio about 1 year ago
- 2 comments