Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenMS/OpenMS issues and pull requests
#7294 - Linux build instructions could be simplified.
Issue -
State: open - Opened by timosachsenberg 9 months ago
#7293 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `27dfc2a`
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies, submodules
#7292 - Investigate building snap/flatpak packages for linux
Issue -
State: open - Opened by poshul 9 months ago
Labels: BinaryPackages, sprint candidate
#7291 - Fix developer docs and warnings
Pull Request -
State: closed - Opened by cbielow 9 months ago
- 2 comments
#7290 - Fix Windows installer's extra Dll's from GHA
Issue -
State: closed - Opened by cbielow 9 months ago
- 14 comments
Labels: blocker
#7289 - Where is MSSimulator?
Issue -
State: closed - Opened by Ministreliya131 9 months ago
- 2 comments
#7288 - OpenMS File archive not working
Issue -
State: closed - Opened by jpfeuffer 9 months ago
- 2 comments
Labels: blocker
#7287 - How to write cython code of struct in struct in the type declaration.
Issue -
State: closed - Opened by JKVISION1101 9 months ago
- 3 comments
#7286 - License header
Pull Request -
State: closed - Opened by timosachsenberg 9 months ago
- 1 comment
#7285 - when cythonize, No such file or directory error (wrapping class for pyopenms)
Issue -
State: closed - Opened by JKVISION1101 9 months ago
- 4 comments
#7284 - Parameter ms1_isotopes ignored
Issue -
State: open - Opened by cbielow 9 months ago
- 1 comment
#7283 - When making pxd file for wrapping class, question about cimport.
Issue -
State: closed - Opened by JKVISION1101 9 months ago
- 4 comments
#7282 - Always set working dir in pyopenms tests
Pull Request -
State: closed - Opened by jpfeuffer 9 months ago
- 2 comments
#7281 - After building pyopenms, ctest failed, although importing pyopenms worked well,
Issue -
State: closed - Opened by JKVISION1101 9 months ago
- 10 comments
#7280 - deisotopeAndSingleCharge: Removes Highest Intensity Peaks, bug?
Issue -
State: open - Opened by CCranney 9 months ago
- 5 comments
#7279 - Bump tj-actions/changed-files from 34.6.1 to 41.0.0 in /.github/workflows
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, github_actions
#7278 - [ByGitAction] Updated year number in the header of files
Pull Request -
State: closed - Opened by github-actions[bot] 9 months ago
- 4 comments
#7277 - cmake cleanup
Pull Request -
State: closed - Opened by timosachsenberg 9 months ago
#7276 - Is there an elegant way to present the ProteomicsLFQ results?
Issue -
State: closed - Opened by liuxiawei 9 months ago
- 2 comments
#7275 - fix: remove CWL CI and pregenerated tool description files
Pull Request -
State: closed - Opened by SGSSGene 10 months ago
- 1 comment
#7274 - Allow different sizes of compressed output in zlib unit tests
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 1 comment
#7273 - Display proper exit code when external process crashes
Pull Request -
State: closed - Opened by cbielow 10 months ago
- 2 comments
#7272 - [FEATURE] Concurrent MSGF+ database indexing
Pull Request -
State: closed - Opened by cbielow 10 months ago
- 5 comments
#7271 - 7 tests fail when using zlib-ng
Issue -
State: open - Opened by tuliom 10 months ago
- 6 comments
#7270 - Update openms_ci_matrix_full.yml
Pull Request -
State: closed - Opened by poshul 10 months ago
- 3 comments
#7269 - Bump brew python to 3.12
Pull Request -
State: closed - Opened by poshul 10 months ago
#7268 - [NOP] renamed "thirdparty" folder to the more common "extern"
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 9 comments
#7267 - Bump contrib from `69e61f2` to `5e42765`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies
#7266 - Delete cmake/Modules/FindHDF5.cmake
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 1 comment
#7265 - add __repr__
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 9 comments
#7264 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `bb095b8`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#7263 - Aligning Parameters/ New SpectrumGenerator
Pull Request -
State: closed - Opened by Trapho 10 months ago
#7262 - support tools with multiple headers and cpp files
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 3 comments
#7261 - Move CWL outputs to own build subfolder
Issue -
State: closed - Opened by jpfeuffer 10 months ago
- 9 comments
#7260 - Error report in XTandemAdapter, IDScoreSwitcher, and ProteomicsLFQ
Issue -
State: closed - Opened by liuxiawei 10 months ago
- 6 comments
#7259 - Add conversion for MSSpectrum & PeptideHit to spectrum_utils MsmsSpectrum
Pull Request -
State: open - Opened by matteopilz 10 months ago
- 19 comments
#7258 - Update TOPPAS tutorial
Pull Request -
State: closed - Opened by cbielow 10 months ago
#7257 - Run example TOPPAS workflows with CI
Issue -
State: open - Opened by cbielow 10 months ago
#7256 - our example mzML files could use an update
Issue -
State: open - Opened by cbielow 10 months ago
#7255 - Running MSGF+ in parallel crashes when input DB is new
Issue -
State: closed - Opened by cbielow 10 months ago
- 1 comment
#7254 - TOPPView: Running TOPP tools fails
Issue -
State: closed - Opened by cbielow 10 months ago
- 3 comments
Labels: blocker
#7253 - fix warning in traml handler
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
#7252 - The incomplete documentation makes beginners feel extremely difficult.
Issue -
State: closed - Opened by liuxiawei 10 months ago
- 6 comments
#7251 - Make ParamIterator a real iterator
Issue -
State: open - Opened by timosachsenberg 10 months ago
#7250 - fix doc
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
#7249 - Patch/extend osw output
Pull Request -
State: closed - Opened by jcharkow 10 months ago
- 6 comments
#7248 - [Feature request] Add more low-level MSExperiment multidimensional access functions
Issue -
State: open - Opened by jpfeuffer 10 months ago
- 5 comments
#7247 - fix wrong OpenMP max_threads in OpenMSInfo TOPP tool
Pull Request -
State: closed - Opened by cbielow 10 months ago
#7246 - How do I perform quantitative analysis on PRM data using OpenMS?
Issue -
State: open - Opened by Allen188 10 months ago
- 2 comments
#7245 - Check if this excludes vcpkg from dependabot.yml updates
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
#7244 - Bump vcpkg from `64ca152` to `e85cafa`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#7243 - Plotting fix - matched peaks highlighting
Pull Request -
State: closed - Opened by matteopilz 10 months ago
- 28 comments
#7242 - Bump vcpkg from `64ca152` to `4cac260`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#7241 - Check pyopenms compatibility with Cython < 3.0
Issue -
State: open - Opened by jpfeuffer 10 months ago
- 1 comment
#7240 - more robust precursor purity (PR 3 of X)
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 5 comments
#7239 - [cleanup] remove outdated RNPxl tool (PR 2 of X)
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 2 comments
#7238 - [refactoring] moving files into more appropriate folders (PR 1 of X)
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
#7237 - [FEATURE] z* and z' ions for ExD (fixed tests)
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
#7236 - Added port file to use qt from system libraries, fixed bug in LPWrapper cmake files (thanks Julianus)
Pull Request -
State: closed - Opened by timosachsenberg 10 months ago
- 2 comments
#7235 - FindCOIN.cmake use imported targets
Pull Request -
State: closed - Opened by jpfeuffer 10 months ago
- 2 comments
#7234 - SiriusAdapter replaced with SiriusExport and adaptations to AssayGeneratorMetabo
Pull Request -
State: closed - Opened by axelwalter 10 months ago
- 9 comments
#7232 - Refactoring FragmentIndex
Pull Request -
State: closed - Opened by Trapho 10 months ago
#7231 - [SageAdapter] Feature req: Have a load-only functionality
Issue -
State: open - Opened by jpfeuffer 10 months ago
- 5 comments
#7230 - work around Clang bug
Pull Request -
State: closed - Opened by cbielow 10 months ago
#7229 - always print error when MSGF+ fails
Pull Request -
State: closed - Opened by jpfeuffer 10 months ago
#7228 - Follow a specification for fragment ion annotations
Issue -
State: open - Opened by jpfeuffer 10 months ago
- 1 comment
#7227 - move cwl generation into release action
Issue -
State: open - Opened by timosachsenberg 10 months ago
#7226 - [FEATURE] z* and z' ions for ExD
Pull Request -
State: closed - Opened by jpfeuffer 10 months ago
- 18 comments
#7225 - Fix resampler
Pull Request -
State: closed - Opened by cbielow 10 months ago
#7224 - vcpkg might have more requirements than our contrib
Issue -
State: open - Opened by timosachsenberg 10 months ago
- 13 comments
Labels: question
#7223 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `5fc3503`
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#7222 - OpenSWATH: Differences Between OSW and TSV File Contents
Issue -
State: closed - Opened by bruadi 10 months ago
- 17 comments
#7221 - [FIX] TOPPView: fix crash when viewing certain Chromatograms
Pull Request -
State: closed - Opened by cbielow 11 months ago
- 2 comments
#7220 - terminate called after throwing an instance of 'std::length_error' what(): vector::_M_range_insert
Issue -
State: closed - Opened by AmmarkoV 11 months ago
- 3 comments
#7219 - Support different proton abstracted, radicalized, ... c/z ions for ECD
Issue -
State: open - Opened by jpfeuffer 11 months ago
- 1 comment
#7218 - Handle coinor from brew as well
Pull Request -
State: closed - Opened by jpfeuffer 11 months ago
- 1 comment
#7217 - how to build pyopenms
Issue -
State: closed - Opened by JKVISION1101 11 months ago
- 30 comments
#7216 - Fix SpectrumAnnotator small metadata issue
Pull Request -
State: closed - Opened by jpfeuffer 11 months ago
#7215 - Fix plotting.py for existing annotations from SpectrumAnnotator
Pull Request -
State: closed - Opened by jpfeuffer 11 months ago
- 14 comments
Labels: NoJenkins
#7214 - pyopenms 3.1 not available for Silicon macs
Issue -
State: open - Opened by jpfeuffer 11 months ago
#7213 - [FIX] TOPPAS: open files in TOPPView
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7212 - Update openms_ci_matrix_full.yml
Pull Request -
State: closed - Opened by poshul 11 months ago
#7211 - Resampler uses Da instead of PPM
Issue -
State: closed - Opened by cbielow 11 months ago
- 1 comment
#7210 - Release action
Pull Request -
State: closed - Opened by poshul 11 months ago
- 18 comments
#7209 - Feature/csv comments
Pull Request -
State: closed - Opened by enetz 11 months ago
#7208 - [NOMERGE] Release3.0.0 winfix
Pull Request -
State: closed - Opened by cbielow 11 months ago
#7207 - [fix] add licenses for tool_description_lib
Pull Request -
State: closed - Opened by poshul 11 months ago
#7206 - NOP
Issue -
State: closed - Opened by timosachsenberg 11 months ago
#7205 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `16607af`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 1 comment
Labels: dependencies
#7204 - Install 3.x.0 for single user in windows doesn't create shortcuts
Issue -
State: closed - Opened by poshul 11 months ago
- 5 comments
Labels: sprint candidate
#7203 - Improve spectrum visualization and also provide in streamlit template
Issue -
State: open - Opened by timosachsenberg 11 months ago
#7202 - Resolve KNIME THIRDPARTY issues
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 2 comments
#7201 - Host FLASHViewer
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 8 comments
#7200 - Review/Work on FragmentIndex PR
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 1 comment
#7199 - Replace SIRIUSAdapter with SIRIUSExporter, adapt AssayGeneratorMetabo and reimplement DIAMetalyzer workflow with it
Issue -
State: open - Opened by timosachsenberg 11 months ago
- 4 comments
#7198 - Add mold linker
Pull Request -
State: closed - Opened by timosachsenberg 11 months ago
- 3 comments
Labels: NoJenkins
#7197 - Remove the rest of ERPairFinder
Pull Request -
State: closed - Opened by poshul 11 months ago
- 1 comment
#7196 - Loading pepxml files : RuntimeError: the value 'B' was used but is not valid; Modification '': origin must be a letter from A to Y, excluding B and J.
Issue -
State: open - Opened by coalooball 11 months ago
- 4 comments
#7195 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `1d810ae`
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 1 comment
Labels: dependencies
#7194 - [GHA] Overwrite 1k NSIS without prompt
Pull Request -
State: closed - Opened by poshul 11 months ago