Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / OpenMS/OpenMS issues and pull requests

#7398 - MacOS CI failing due to brew+GHA python conflict

Issue - State: closed - Opened by jpfeuffer 7 months ago - 1 comment

#7397 - [INTERNAL] Simplify how custom OpenMS types are defined

Pull Request - State: closed - Opened by cbielow 7 months ago - 2 comments

#7396 - Update existing C++ tutorials

Pull Request - State: closed - Opened by cbielow 7 months ago - 1 comment

#7395 - [DOC] Ion mobility converter: clarification of input-output data

Pull Request - State: closed - Opened by cbielow 7 months ago

#7394 - make pyopenms compile again

Pull Request - State: closed - Opened by timosachsenberg 7 months ago - 8 comments

#7393 - Bump src/pyOpenMS/pyopenms-docs from `e75ffd0` to `df06fc8`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#7392 - question: how to adapt MatrixDouble.pyx

Issue - State: closed - Opened by timosachsenberg 7 months ago - 7 comments
Labels: question

#7391 - Nightly installers aren't getting linked to their respective 'latest'

Issue - State: open - Opened by poshul 7 months ago
Labels: CI, sprint candidate

#7390 - Remove unnecessary redeclaration of KNIME version

Pull Request - State: closed - Opened by poshul 7 months ago

#7389 - Revert to targeting KNIME 5.1

Pull Request - State: closed - Opened by poshul 7 months ago

#7388 - Only try to download the changelog if do_release

Pull Request - State: closed - Opened by poshul 7 months ago

#7387 - Trigger openms-ci-full after merging from develop

Pull Request - State: closed - Opened by poshul 7 months ago

#7386 - Update pyopenms-wheels.yml with latest *-artifacts action version

Pull Request - State: closed - Opened by poshul 7 months ago

#7385 - Bump github-actions-cpu-cores version

Pull Request - State: closed - Opened by poshul 7 months ago

#7384 - Is it possible to run MSFraggerAdapter as a "Quick scan" workflow?

Issue - State: open - Opened by rolivella 7 months ago - 1 comment

#7383 - [DOC] update citation from OpenMS 2 --> 3

Pull Request - State: closed - Opened by cbielow 7 months ago

#7382 - Bump src/pyOpenMS/pyopenms-docs from `6a0aab2` to `e75ffd0`

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#7381 - TargetedFileConverter issue

Issue - State: open - Opened by Droslj 7 months ago

#7379 - Update openms_ci_matrix_full.yml

Pull Request - State: closed - Opened by timosachsenberg 7 months ago

#7378 - Update openms_ci_matrix_full.yml

Pull Request - State: closed - Opened by timosachsenberg 7 months ago

#7377 - attempt to install eigen from chocolatey

Pull Request - State: closed - Opened by timosachsenberg 7 months ago - 1 comment

#7376 - Update MatrixUtils.h with correct(?) eigen include path

Pull Request - State: closed - Opened by timosachsenberg 7 months ago - 6 comments

#7375 - mzML writer: no valid checksum

Issue - State: open - Opened by sneumann 8 months ago - 1 comment

#7374 - Think about building develop from time to time for ccache

Issue - State: open - Opened by jpfeuffer 8 months ago - 7 comments

#7373 - Use v4 artifacts in GHA

Issue - State: closed - Opened by jpfeuffer 8 months ago - 3 comments

#7371 - Bump contrib from `04d64c6` to `5545518`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#7370 - Update openms_ci_matrix_full.yml

Pull Request - State: closed - Opened by poshul 8 months ago

#7369 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7368 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7367 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7366 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7365 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7364 - RawFileConverter missing binary for KNIME plugin

Issue - State: open - Opened by poshul 8 months ago - 7 comments

#7363 - Follow up SIRIUS changes

Issue - State: open - Opened by axelwalter 8 months ago
Labels: sprint candidate

#7362 - Use GitHub Release targz on bioconda for autobump?

Issue - State: open - Opened by jpfeuffer 8 months ago

#7361 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7360 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7359 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7358 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7357 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7356 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7355 - Add KNIME package support for macos arm

Pull Request - State: closed - Opened by jpfeuffer 8 months ago

#7354 - [DOC] update C++ developer tutorials (part1)

Pull Request - State: closed - Opened by cbielow 8 months ago - 1 comment

#7353 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7352 - Update update_nightly.yml testing

Pull Request - State: closed - Opened by poshul 8 months ago

#7351 - use conda packages for windows ci

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 5 comments

#7350 - Update update_nightly.yml

Pull Request - State: closed - Opened by poshul 8 months ago

#7349 - Exclude some tests on mac for MRMAssay_test.cpp

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 2 comments

#7348 - Add Apple Silicon support to CI

Pull Request - State: closed - Opened by jpfeuffer 8 months ago - 8 comments

#7347 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7346 - Merge latest release into develop

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: feature, automated pr

#7345 - Use system libraries for contrib on Mac

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 2 comments

#7343 - sync with develop

Pull Request - State: closed - Opened by timosachsenberg 8 months ago

#7342 - Caching of contrib in OpenMS CI full action

Issue - State: open - Opened by timosachsenberg 8 months ago - 14 comments

#7341 - Update package_general.cmake

Pull Request - State: closed - Opened by timosachsenberg 8 months ago

#7340 - Bump contrib from `3a9eba4` to `5545518`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#7339 - Fix mac runner brew issues

Pull Request - State: closed - Opened by poshul 8 months ago - 4 comments

#7337 - fix: installation of examples directory in unnecessary sub-folder

Pull Request - State: closed - Opened by radusuciu 8 months ago - 1 comment

#7336 - Update openms_ci_matrix_full.yml

Pull Request - State: closed - Opened by poshul 8 months ago

#7335 - [refactor] Major refactoring of old static factory code

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 5 comments

#7334 - Update update_nightly.yml

Pull Request - State: closed - Opened by poshul 8 months ago - 1 comment

#7333 - OpenMS is not working

Issue - State: open - Opened by clin888 8 months ago - 15 comments

#7332 - [DOC] Developer guide cleanup

Pull Request - State: closed - Opened by cbielow 8 months ago - 1 comment

#7331 - Exclude some more dlls from packaging

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 10 comments

#7330 - Bump contrib from `5e42765` to `3a9eba4`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, submodules

#7329 - Stop KNIME site building multiple times on linux in GHA

Pull Request - State: closed - Opened by poshul 8 months ago - 3 comments
Labels: enhancement

#7328 - Set KNIME update site to not build on Ubuntu clang++

Pull Request - State: closed - Opened by poshul 8 months ago - 6 comments
Labels: enhancement, Review effort [1-5]: 1

#7327 - Use private key in nightly action to be able to trigger other workflow

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 4 comments
Labels: enhancement, Review effort [1-5]: 1

#7326 - remove matrix utils. replace OpenMS matrix class with eigen matrix

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 26 comments
Labels: enhancement, Review effort [1-5]: 4

#7325 - fix nightly

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 3 comments
Labels: enhancement, Review effort [1-5]: 1

#7324 - [DOC] developer documentation update (C++17 etc)

Pull Request - State: closed - Opened by cbielow 8 months ago - 2 comments

#7323 - removes need for PSMFeatureExtractor by always adding percolator features

Pull Request - State: open - Opened by timosachsenberg 8 months ago - 5 comments
Labels: enhancement, Review effort [1-5]: 3

#7322 - Update executables.cmake

Pull Request - State: closed - Opened by timosachsenberg 8 months ago - 5 comments
Labels: enhancement, Review effort [1-5]: 1

#7320 - More flexible handling of doxygen warnings

Pull Request - State: closed - Opened by cbielow 8 months ago - 1 comment

#7319 - Q: Feature Finder for IMS data?

Issue - State: open - Opened by jameswallacew8 8 months ago - 2 comments

#7318 - pyFLASHDeconv

Pull Request - State: closed - Opened by JKVISION1101 8 months ago - 1 comment

#7317 - Update GitHub Actions to Latest Versions in CI Workflow

Pull Request - State: closed - Opened by poshul 8 months ago - 4 comments
Labels: enhancement, Review effort [1-5]: 1

#7316 - NSIS installer fails with long file paths

Issue - State: open - Opened by JeeH-K 8 months ago - 11 comments

#7315 - Bump src/pyOpenMS/pyopenms-docs from `229a171` to `6a0aab2`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, submodules

#7313 - Enhancements in Documentation and Code Readability

Pull Request - State: closed - Opened by cbielow 8 months ago - 2 comments

#7312 - folders in build archive no accessible

Issue - State: closed - Opened by saassli21 8 months ago - 1 comment

#7311 - Bump src/pyOpenMS/pyopenms-docs from `64016e7` to `229a171`

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, submodules

#7310 - Comet scores duplicated

Issue - State: open - Opened by jpfeuffer 8 months ago - 1 comment

#7309 - nightly merge action fails

Issue - State: closed - Opened by timosachsenberg 8 months ago - 6 comments

#7308 - Enhancements and code simplifications in various files

Pull Request - State: open - Opened by jpfeuffer 9 months ago - 8 comments
Labels: enhancement

#7307 - Update update_nightly.yml

Pull Request - State: closed - Opened by poshul 9 months ago - 1 comment

#7306 - Add action to replace Jenkins at updating the nightly branch every night

Pull Request - State: closed - Opened by poshul 9 months ago - 1 comment

#7305 - fix compiler issue

Pull Request - State: closed - Opened by poshul 9 months ago - 3 comments

#7304 - Create codium-pr-agent

Pull Request - State: closed - Opened by timosachsenberg 9 months ago

#7303 - Migrate Dockerfiles from external repository

Pull Request - State: open - Opened by radusuciu 9 months ago - 30 comments

#7301 - Update README

Pull Request - State: closed - Opened by poshul 9 months ago

#7300 - mgf file from single mzML files

Issue - State: closed - Opened by YasinEl 9 months ago - 5 comments

#7299 - OpenSwathWorkflow - swath_windows_file type not restricted!

Issue - State: open - Opened by bruadi 9 months ago - 16 comments
Labels: critical, bug

#7298 - [FEATURE] Simple, targeted, fast IsobaricWorkflow

Pull Request - State: open - Opened by jpfeuffer 9 months ago - 24 comments

#7297 - [Feature] Loading XML from remote locations

Pull Request - State: open - Opened by jpfeuffer 9 months ago - 2 comments

#7296 - Enhancements in MSExperiment and MSSpectrum classes

Pull Request - State: open - Opened by jpfeuffer 9 months ago - 15 comments
Labels: enhancement

#7295 - Enhancements in Documentation and Code Readability

Pull Request - State: closed - Opened by cbielow 9 months ago - 23 comments
Labels: enhancement, Bug fix