Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenMS/OpenMS issues and pull requests
#7499 - How to select ETCID activation for a TRFP mzML file?
Issue -
State: closed - Opened by rolivella 4 months ago
- 18 comments
#7498 - Update percolator
Issue -
State: open - Opened by timosachsenberg 4 months ago
Labels: critical
#7497 - Support output directories for TOPP tools and TOPPAS
Pull Request -
State: open - Opened by cbielow 4 months ago
- 14 comments
#7496 - Bump THIRDPARTY from `12eb8d3` to `d6594eb`
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies
#7495 - Wrong retention time values
Issue -
State: closed - Opened by luca-annecchino 4 months ago
- 1 comment
#7494 - What IDE do you recommend for developing and building openMS(C++) under macOS
Issue -
State: closed - Opened by suhande 5 months ago
- 1 comment
#7493 - Update update_nightly.yml
Pull Request -
State: closed - Opened by poshul 5 months ago
- 6 comments
Labels: enhancement, Review effort [1-5]: 2
#7492 - make more parameters advanced in MetaProSIP
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
- 11 comments
Labels: enhancement, Review effort [1-5]: 2
#7491 - Wrap getvalidstrings
Pull Request -
State: closed - Opened by poshul 5 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 2
#7490 - make IonName(s) consistent. remove old fragmentselectioncode
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
- 9 comments
Labels: enhancement, Review effort [1-5]: 3, bug_fix
#7489 - [Feature] Export ion annotations for MSSpectrum DataFrame
Pull Request -
State: closed - Opened by axelwalter 5 months ago
- 4 comments
Labels: enhancement, Review effort [1-5]: 3, tests
#7488 - Bump src/pyOpenMS/pyopenms-docs from `df06fc8` to `9875a9e`
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#7487 - Comet search engines update.
Issue -
State: open - Opened by ypriverol 5 months ago
#7486 - Added support for RNAse4 digestion of RNA. Fixed buggy regex for prot…
Pull Request -
State: closed - Opened by poshul 5 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 3, bug_fix
#7485 - Use macos-13 runner as it's the last x86 mac one
Pull Request -
State: closed - Opened by poshul 5 months ago
- 15 comments
Labels: enhancement, Review effort [1-5]: 2
#7484 - fix compile warnings
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
- 6 comments
Labels: Review effort [1-5]: 2, bug_fix
#7483 - update citations
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 2
#7482 - Move contrib from abibuilder to GitHub
Pull Request -
State: closed - Opened by t0mdavid-m 5 months ago
- 6 comments
Labels: enhancement, Review effort [1-5]: 2
#7481 - [Feature] DataFrame export for MSSpectrum and MSChromatogram
Pull Request -
State: closed - Opened by axelwalter 5 months ago
- 9 comments
Labels: enhancement, Review effort [1-5]: 4, tests
#7480 - Bump THIRDPARTY from `947b56a` to `12eb8d3`
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#7479 - Bump contrib from `f2053b2` to `b786ca3`
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#7478 - Update codium-pr-agent.yml
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7477 - Bump contrib from `5545518` to `f2053b2`
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#7476 - remove some old files, script for unused test files
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7475 - Pyopenms build fails due to recent refactors
Issue -
State: closed - Opened by jpfeuffer 5 months ago
- 2 comments
Labels: blocker
#7474 - [refactor] merge some ff centroided classes into one file. remove FeatureFinderMRM
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7473 - [refactor] Move deisotoping
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7472 - [refactor] rename FILTERING to PROCESSING
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7471 - [refactor] Move spectramerging
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7470 - [refactor] Move scaling
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7469 - [refactor] move resampling code to separate folder
Pull Request -
State: closed - Opened by timosachsenberg 5 months ago
#7468 - OpenSwath uis score testing
Issue -
State: open - Opened by jcharkow 6 months ago
- 16 comments
Labels: OpenSWATH
#7467 - [refactor] SpectraFilterScaler and rename Scaler to RankScaler
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7466 - [refactor] remove msquantifications / mzquantml
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7465 - Bump contrib from `8d83037` to `ea62162`
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#7464 - bug fixes...
Pull Request -
State: closed - Opened by cbielow 6 months ago
#7463 - [refactor] remove or hide redundant identification classes
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7462 - Fix bug running TOPP tools in TOPPView.
Pull Request -
State: closed - Opened by poshul 6 months ago
- 1 comment
#7461 - [remove] standarddeclarations file
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7460 - Bump contrib from `8d83037` to `00c21bb`
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#7459 - [FEATURE] Binning and reporting of IonMobility
Pull Request -
State: closed - Opened by cbielow 6 months ago
- 1 comment
#7458 - [refactor] remove old filter code (de novo low res)
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7457 - Bump contrib from `5545518` to `8d83037`
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#7456 - Python 3.12 related fixes
Pull Request -
State: closed - Opened by poshul 6 months ago
- 11 comments
#7455 - Three twelve fixes
Pull Request -
State: closed - Opened by poshul 6 months ago
#7454 - Create AssignSourceGroups.cmake
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 5 comments
#7453 - started to work on IM code in FFID
Pull Request -
State: open - Opened by timosachsenberg 6 months ago
- 5 comments
Labels: enhancement, Review effort [1-5]: 3
#7452 - [refactor] move statistics and math funcitons into math root
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7451 - [refactor] move interpolation code
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7450 - [refactor] move regression code into ML
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7449 - [refactor] Remove averagepos
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7448 - [refactor] remove transformations folder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7447 - [refactor] flatten comparison
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7446 - [refactor] move ROCcurve
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7445 - [refactor] mv MSNumpress from math to format
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7444 - [refactor] move gridsearch to ML folder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7443 - [refactor] move peakpicker
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7442 - [refactor] move binnedspectrum to kernel
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7441 - adding RANSAC to ML folder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7440 - move svm and clustering to ml folder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 2 comments
#7439 - FileConverter fails for symlinked raw input
Issue -
State: open - Opened by bernt-matthias 6 months ago
- 7 comments
#7438 - playground: change folder structure
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
Labels: NoJenkins
#7437 - [remove] proteinresolver code
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7436 - [remove] PSProteinInference (parsimony-based approach)
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7435 - prune the whole share for pyopenms
Pull Request -
State: closed - Opened by poshul 6 months ago
- 5 comments
#7434 - question: feasible to update to newer manylinux?
Issue -
State: closed - Opened by timosachsenberg 6 months ago
- 3 comments
#7433 - [REFACTOR] rename RAW2PEAK to CENTROIDING
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7432 - Use system contrib libs for Mac wheel
Pull Request -
State: closed - Opened by poshul 6 months ago
- 2 comments
#7431 - Update python_versions.json
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7430 - Bump version of checkout action
Pull Request -
State: closed - Opened by poshul 6 months ago
- 1 comment
#7429 - Add RNAse T1 + Phosphatase as an enzyme choice.
Pull Request -
State: closed - Opened by poshul 6 months ago
- 1 comment
#7428 - Debian package download stalling
Issue -
State: closed - Opened by jpfeuffer 6 months ago
- 3 comments
Labels: BinaryPackages, blocker
#7427 - [FEATURE/FIX] TOPPView can show MSn ion mobility frames
Pull Request -
State: closed - Opened by cbielow 6 months ago
- 3 comments
#7426 - [TOPPView] showing an Ion mobility frame with MS level = 2 fails
Issue -
State: closed - Opened by cbielow 6 months ago
- 1 comment
#7425 - export IM from sage
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 2 comments
#7424 - fix windows build error
Pull Request -
State: closed - Opened by cbielow 6 months ago
- 4 comments
#7423 - [FEATURE, API] TOPPView: offer Ion mobility view from 2D spectra view
Pull Request -
State: closed - Opened by cbielow 6 months ago
#7422 - Standarizing enzymes for three major search engines COMET MSGF+ and SAGE
Pull Request -
State: closed - Opened by ypriverol 6 months ago
- 1 comment
#7421 - [refactor] move SVM from ANALYSIS to MATH folder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
- 1 comment
#7420 - [quantms,core] add IM support to FeatureFInderIdentification and FeaturteFinderMetaboIdent
Issue -
State: open - Opened by timosachsenberg 6 months ago
- 19 comments
Labels: core
#7419 - The tests for mono fails in gitpod because mono is not installed
Issue -
State: closed - Opened by ypriverol 6 months ago
- 2 comments
#7418 - pyOpenMS: Log warnings in pure Python code with warnings.warn instead of print
Pull Request -
State: closed - Opened by RalfG 6 months ago
- 3 comments
#7417 - pyopenms and nightly update CI broken
Issue -
State: closed - Opened by jpfeuffer 6 months ago
- 4 comments
Labels: major
#7416 - pyopenms build failing in windows. (unresolved external symbol "__declspec(dllimport) public:)
Issue -
State: closed - Opened by JKVISION1101 6 months ago
- 2 comments
#7414 - MSGF+ min_peaks option added
Pull Request -
State: closed - Opened by ypriverol 6 months ago
- 3 comments
#7413 - experimental design file
Issue -
State: open - Opened by josephineabighanem 6 months ago
#7412 - remove weightwrapper
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7411 - remove simple pair finder
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7410 - remove unneeded includes
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7409 - removed some of the left overs
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7408 - remove TypeAsString
Pull Request -
State: closed - Opened by timosachsenberg 6 months ago
#7407 - windows builds failing. contrib not found (probably IT again)
Issue -
State: closed - Opened by timosachsenberg 7 months ago
#7406 - remove old denovo marker code
Pull Request -
State: closed - Opened by timosachsenberg 7 months ago
#7405 - remove PeakPickerMaxima
Pull Request -
State: closed - Opened by timosachsenberg 7 months ago
#7404 - [Fix] Remove unused pxd file
Pull Request -
State: closed - Opened by axelwalter 7 months ago
#7403 - fix python types
Pull Request -
State: closed - Opened by cbielow 7 months ago
- 2 comments
#7402 - remove proton distribution model
Pull Request -
State: closed - Opened by timosachsenberg 7 months ago
#7401 - Remove old hidden markov model code
Pull Request -
State: closed - Opened by timosachsenberg 7 months ago
#7400 - [FIX] Warn use of bitwise '&' with boolean operands
Pull Request -
State: closed - Opened by jpfeuffer 7 months ago
#7399 - [Fix] GHA MacOS python brew problem
Pull Request -
State: closed - Opened by jpfeuffer 7 months ago