Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenMS/OpenMS issues and pull requests
#7529 - Add zip option for packaging
Pull Request -
State: open - Opened by t0mdavid-m 4 days ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 3
#7528 - Trouble copying MSVC runtime libraries as part of build / package process
Issue -
State: open - Opened by timosachsenberg 4 days ago
- 6 comments
#7527 - KNIME Plugin needs update
Issue -
State: open - Opened by cbielow 5 days ago
#7526 - Filtering by Scan Number not working as intended?
Issue -
State: open - Opened by pesavent 6 days ago
- 4 comments
#7525 - Porting from Qt5 to Qt6
Pull Request -
State: open - Opened by cbielow 6 days ago
- 8 comments
#7524 - Deprecate XTandemAdapter.cpp
Pull Request -
State: closed - Opened by cbielow 8 days ago
- 4 comments
Labels: Documentation, Review effort [1-5]: 1
#7523 - Update CHANGELOG
Pull Request -
State: closed - Opened by timosachsenberg 8 days ago
- 2 comments
Labels: Documentation, Review effort [1-5]: 1
#7522 - Pypifixes
Pull Request -
State: closed - Opened by poshul 11 days ago
- 3 comments
Labels: enhancement, Bug fix, Review effort [1-5]: 3
#7521 - Correct name of pyopenms-wheels-and-packages
Pull Request -
State: closed - Opened by poshul 11 days ago
- 2 comments
Labels: Review effort [1-5]: 1, configuration changes
#7520 - Update openms_ci_matrix_full.yml to properly set source archive name
Pull Request -
State: closed - Opened by timosachsenberg 13 days ago
- 3 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7519 - Update pyopenms test actions
Pull Request -
State: closed - Opened by matteopilz 13 days ago
- 2 comments
Labels: enhancement, dependencies, Review effort [1-5]: 2
#7518 - use contrib from github
Pull Request -
State: closed - Opened by timosachsenberg 13 days ago
- 2 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7517 - Fix install numpy <=1.26.4
Pull Request -
State: closed - Opened by matteopilz 14 days ago
- 2 comments
Labels: Bug fix, Review effort [1-5]: 1, configuration changes
#7516 - Numpy install 1.26.4 or earlier
Pull Request -
State: closed - Opened by matteopilz 14 days ago
- 3 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7515 - Set pyopenms numpy install<2.0
Pull Request -
State: closed - Opened by matteopilz 14 days ago
- 3 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7514 - Revert "Update test_pyopenms.yml"
Pull Request -
State: closed - Opened by timosachsenberg 14 days ago
- 2 comments
Labels: Review effort [1-5]: 1, configuration changes
#7513 - Update test_pyopenms.yml
Pull Request -
State: closed - Opened by timosachsenberg 14 days ago
- 2 comments
Labels: Review effort [1-5]: 1, configuration changes
#7512 - fix etcid encoding with supplemental cv term
Pull Request -
State: closed - Opened by timosachsenberg 15 days ago
- 2 comments
Labels: enhancement, Bug fix, Review effort [1-5]: 2
#7511 - Support or avoid numpy 2.0 in pyopenms
Issue -
State: closed - Opened by timosachsenberg 15 days ago
- 8 comments
#7510 - update PSI ontology
Pull Request -
State: closed - Opened by timosachsenberg 15 days ago
- 2 comments
Labels: enhancement, Bug fix, Review effort [1-5]: 4
#7509 - OpenSwathWorkflow command not found in Singularity
Issue -
State: closed - Opened by HFan11 18 days ago
- 1 comment
#7508 - parse relationship as xref
Pull Request -
State: closed - Opened by timosachsenberg 18 days ago
- 2 comments
Labels: enhancement, Review effort [1-5]: 3
#7507 - TOPPAS & SageAdapter
Issue -
State: closed - Opened by TheB1307 18 days ago
- 3 comments
#7506 - update PSI-MS.obo
Pull Request -
State: closed - Opened by timosachsenberg 18 days ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 2, tests
#7505 - Revert "Update psi-ms.obo"
Pull Request -
State: closed - Opened by timosachsenberg 18 days ago
- 2 comments
Labels: Bug fix, Review effort [1-5]: 2
#7504 - remove deprecated doxygen thing
Pull Request -
State: closed - Opened by poshul 18 days ago
#7503 - Build pyopenmswheels nightly
Pull Request -
State: closed - Opened by poshul 18 days ago
- 2 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7502 - always install doxygen
Pull Request -
State: closed - Opened by timosachsenberg 18 days ago
- 2 comments
Labels: enhancement, Review effort [1-5]: 2, configuration changes
#7501 - Nightly build questions
Issue -
State: open - Opened by jpfeuffer 20 days ago
- 5 comments
#7500 - Update psi-ms.obo
Pull Request -
State: closed - Opened by timosachsenberg 20 days ago
- 2 comments
Labels: enhancement, Review effort [1-5]: 2
#7499 - How to select ETCID activation for a TRFP mzML file?
Issue -
State: closed - Opened by rolivella 21 days ago
- 16 comments
#7498 - Update percolator
Issue -
State: open - Opened by timosachsenberg 27 days ago
Labels: critical
#7497 - Support output directories for TOPP tools and TOPPAS
Pull Request -
State: open - Opened by cbielow 28 days ago
- 12 comments
#7496 - Bump THIRDPARTY from `12eb8d3` to `d6594eb`
Pull Request -
State: closed - Opened by dependabot[bot] about 1 month ago
- 1 comment
Labels: dependencies
#7495 - Wrong retention time values
Issue -
State: closed - Opened by luca-annecchino about 1 month ago
- 1 comment
#7494 - What IDE do you recommend for developing and building openMS(C++) under macOS
Issue -
State: closed - Opened by suhande about 1 month ago
- 1 comment
#7493 - Update update_nightly.yml
Pull Request -
State: closed - Opened by poshul about 2 months ago
- 6 comments
Labels: enhancement, Review effort [1-5]: 2
#7492 - make more parameters advanced in MetaProSIP
Pull Request -
State: closed - Opened by timosachsenberg about 2 months ago
- 11 comments
Labels: enhancement, Review effort [1-5]: 2
#7491 - Wrap getvalidstrings
Pull Request -
State: closed - Opened by poshul about 2 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 2
#7490 - make IonName(s) consistent. remove old fragmentselectioncode
Pull Request -
State: closed - Opened by timosachsenberg about 2 months ago
- 9 comments
Labels: enhancement, Review effort [1-5]: 3, bug_fix
#7489 - [Feature] Export ion annotations for MSSpectrum DataFrame
Pull Request -
State: closed - Opened by axelwalter about 2 months ago
- 4 comments
Labels: enhancement, Review effort [1-5]: 3, tests
#7488 - Bump src/pyOpenMS/pyopenms-docs from `df06fc8` to `9875a9e`
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
- 1 comment
Labels: dependencies
#7487 - Comet search engines update.
Issue -
State: open - Opened by ypriverol about 2 months ago
#7486 - Added support for RNAse4 digestion of RNA. Fixed buggy regex for prot…
Pull Request -
State: closed - Opened by poshul about 2 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 3, bug_fix
#7485 - Use macos-13 runner as it's the last x86 mac one
Pull Request -
State: closed - Opened by poshul about 2 months ago
- 15 comments
Labels: enhancement, Review effort [1-5]: 2
#7484 - fix compile warnings
Pull Request -
State: closed - Opened by timosachsenberg about 2 months ago
- 6 comments
Labels: Review effort [1-5]: 2, bug_fix
#7483 - update citations
Pull Request -
State: closed - Opened by timosachsenberg about 2 months ago
- 7 comments
Labels: enhancement, Review effort [1-5]: 2
#7482 - Move contrib from abibuilder to GitHub
Pull Request -
State: closed - Opened by t0mdavid-m 2 months ago
- 6 comments
Labels: enhancement, Review effort [1-5]: 2
#7481 - [Feature] DataFrame export for MSSpectrum and MSChromatogram
Pull Request -
State: closed - Opened by axelwalter 2 months ago
- 9 comments
Labels: enhancement, Review effort [1-5]: 4, tests
#7480 - Bump THIRDPARTY from `947b56a` to `12eb8d3`
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies
#7479 - Bump contrib from `f2053b2` to `b786ca3`
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies
#7478 - Update codium-pr-agent.yml
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7477 - Bump contrib from `5545518` to `f2053b2`
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies
#7476 - remove some old files, script for unused test files
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7475 - Pyopenms build fails due to recent refactors
Issue -
State: closed - Opened by jpfeuffer 2 months ago
- 2 comments
Labels: blocker
#7474 - [refactor] merge some ff centroided classes into one file. remove FeatureFinderMRM
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7473 - [refactor] Move deisotoping
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7472 - [refactor] rename FILTERING to PROCESSING
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7471 - [refactor] Move spectramerging
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7470 - [refactor] Move scaling
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7469 - [refactor] move resampling code to separate folder
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7468 - OpenSwath uis score testing
Issue -
State: open - Opened by jcharkow 2 months ago
Labels: OpenSWATH
#7467 - [refactor] SpectraFilterScaler and rename Scaler to RankScaler
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7466 - [refactor] remove msquantifications / mzquantml
Pull Request -
State: closed - Opened by timosachsenberg 2 months ago
#7465 - Bump contrib from `8d83037` to `ea62162`
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies
#7464 - bug fixes...
Pull Request -
State: closed - Opened by cbielow 3 months ago
#7463 - [refactor] remove or hide redundant identification classes
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7462 - Fix bug running TOPP tools in TOPPView.
Pull Request -
State: closed - Opened by poshul 3 months ago
- 1 comment
#7461 - [remove] standarddeclarations file
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7460 - Bump contrib from `8d83037` to `00c21bb`
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 1 comment
Labels: dependencies
#7459 - [FEATURE] Binning and reporting of IonMobility
Pull Request -
State: closed - Opened by cbielow 3 months ago
- 1 comment
#7458 - [refactor] remove old filter code (de novo low res)
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7457 - Bump contrib from `5545518` to `8d83037`
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#7456 - Python 3.12 related fixes
Pull Request -
State: closed - Opened by poshul 3 months ago
- 11 comments
#7455 - Three twelve fixes
Pull Request -
State: closed - Opened by poshul 3 months ago
#7454 - Create AssignSourceGroups.cmake
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 5 comments
#7453 - started to work on IM code in FFID
Pull Request -
State: open - Opened by timosachsenberg 3 months ago
- 5 comments
Labels: enhancement, Review effort [1-5]: 3
#7452 - [refactor] move statistics and math funcitons into math root
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7451 - [refactor] move interpolation code
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7450 - [refactor] move regression code into ML
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7449 - [refactor] Remove averagepos
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7448 - [refactor] remove transformations folder
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7447 - [refactor] flatten comparison
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7446 - [refactor] move ROCcurve
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7445 - [refactor] mv MSNumpress from math to format
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7444 - [refactor] move gridsearch to ML folder
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7443 - [refactor] move peakpicker
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7442 - [refactor] move binnedspectrum to kernel
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7441 - adding RANSAC to ML folder
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7440 - move svm and clustering to ml folder
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 2 comments
#7439 - FileConverter fails for symlinked raw input
Issue -
State: open - Opened by bernt-matthias 3 months ago
- 5 comments
#7438 - playground: change folder structure
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
Labels: NoJenkins
#7437 - [remove] proteinresolver code
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7436 - [remove] PSProteinInference (parsimony-based approach)
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7435 - prune the whole share for pyopenms
Pull Request -
State: closed - Opened by poshul 3 months ago
- 5 comments
#7434 - question: feasible to update to newer manylinux?
Issue -
State: closed - Opened by timosachsenberg 3 months ago
- 3 comments
#7433 - [REFACTOR] rename RAW2PEAK to CENTROIDING
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
#7432 - Use system contrib libs for Mac wheel
Pull Request -
State: closed - Opened by poshul 3 months ago
- 2 comments
#7431 - Update python_versions.json
Pull Request -
State: closed - Opened by timosachsenberg 3 months ago
- 1 comment
#7430 - Bump version of checkout action
Pull Request -
State: closed - Opened by poshul 3 months ago
- 1 comment