Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / OpenMS/OpenMS-Tutorials issues and pull requests

#100 - Added section 'Working with chemical structures'

Pull Request - State: closed - Opened by mrurik over 7 years ago - 2 comments

#99 - [ADD] Vis in ToppView; Metbolite;

Pull Request - State: closed - Opened by oliveralka over 7 years ago

#98 - graphic 'align.png' missing

Issue - State: closed - Opened by oliveralka over 7 years ago - 3 comments

#97 - [ADD] Pictures: ProfileCentroided; 3DView - gettingstarted

Pull Request - State: closed - Opened by oliveralka over 7 years ago

#96 - Programmer tutorial

Issue - State: closed - Opened by hroest over 7 years ago - 12 comments

#92 - Add explanation for parameters used in metabolite workflows

Issue - State: closed - Opened by oliveralka over 7 years ago - 1 comment

#91 - Add minimal FFMetabo Workflow

Issue - State: closed - Opened by oliveralka over 7 years ago

#90 - Add picture 3D view

Issue - State: closed - Opened by oliveralka over 7 years ago - 3 comments

#89 - Add looks similar metabolomics

Issue - State: closed - Opened by oliveralka over 7 years ago - 1 comment

#88 - Add profile vs centroid spectra

Issue - State: closed - Opened by oliveralka over 7 years ago - 4 comments

#87 - Working with chemical structures

Issue - State: closed - Opened by mrurik over 7 years ago - 1 comment

#86 - Add MS2 example

Issue - State: closed - Opened by timosachsenberg over 7 years ago - 2 comments

#85 - Add isolation window / fragmentation image

Issue - State: open - Opened by timosachsenberg over 7 years ago - 2 comments

#84 - Add picture of alignment

Issue - State: closed - Opened by timosachsenberg over 7 years ago - 2 comments

#83 - Add picture of feature linking

Issue - State: closed - Opened by timosachsenberg over 7 years ago - 1 comment

#82 - Add image of isotope pattern in 1D

Issue - State: open - Opened by timosachsenberg over 7 years ago - 3 comments

#81 - Some minor changes to the tutorial handout

Pull Request - State: closed - Opened by lukaszimmermann over 7 years ago

#80 - Update labelfree.tex

Pull Request - State: closed - Opened by FabianAicheler over 7 years ago

#79 - MzTabExport from LFQ workflow

Issue - State: open - Opened by timosachsenberg over 7 years ago

#78 - User fail to find correct column to edit in configuration dialog

Issue - State: open - Opened by timosachsenberg over 7 years ago - 1 comment

#77 - corrected path for Complete consensus identification workflow figure

Pull Request - State: closed - Opened by mwalzer over 7 years ago - 1 comment

#76 - Remove second FASTA DB

Issue - State: closed - Opened by jpfeuffer over 7 years ago - 5 comments

#75 - Merges Boston2017 in and adds Elixir logo

Pull Request - State: closed - Opened by jpfeuffer almost 8 years ago - 1 comment

#74 - Explain more helpful concepts in Metanodes

Issue - State: open - Opened by jpfeuffer almost 8 years ago
Labels: enhancement

#72 - Remove second uniprot_..._pyogenes DB from the databases

Issue - State: closed - Opened by jpfeuffer almost 8 years ago - 1 comment

#71 - BOSTON: include note in mail on 64bit only

Issue - State: closed - Opened by timosachsenberg almost 8 years ago

#70 - Slight incompatibility of \newcommand with \directory

Issue - State: open - Opened by jpfeuffer almost 8 years ago - 1 comment

#69 - Changed path representation. Added path for Mac in MTX part.

Pull Request - State: closed - Opened by jpfeuffer almost 8 years ago

#68 - TOPP and TOPPView tutorial seem to not be typeset correctly

Issue - State: closed - Opened by gPirkes almost 8 years ago - 1 comment

#67 - Added FAQ about a weird behaviour.

Pull Request - State: closed - Opened by jpfeuffer almost 8 years ago

#66 - Better explain settings of Joiner node in Metabo WF

Issue - State: closed - Opened by jpfeuffer almost 8 years ago

#65 - Ignore. Jenkins test

Pull Request - State: closed - Opened by jpfeuffer about 8 years ago - 2 comments

#64 - [FIX] compile handout (MikTex)

Pull Request - State: closed - Opened by cbielow about 8 years ago - 2 comments

#63 - DAG Add image of annotated freatures in TOPPView with explanation

Issue - State: closed - Opened by timosachsenberg over 8 years ago - 1 comment

#62 - Run your pipeline and inspect your results... on p.30

Issue - State: closed - Opened by timosachsenberg over 8 years ago

#61 - DAG shift key icon not easily recognized (up key???)

Issue - State: closed - Opened by timosachsenberg over 8 years ago - 2 comments

#60 - KNIME node category missing for unstable release

Issue - State: closed - Opened by timosachsenberg over 8 years ago

#59 - Use knime relative paths

Issue - State: open - Opened by jpfeuffer over 8 years ago - 1 comment

#58 - Describe installation of OpenMS plugin installation better

Issue - State: closed - Opened by jpfeuffer over 8 years ago - 1 comment

#57 - updated consensus workflow

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago - 2 comments

#56 - Update labelfree.tex

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#55 - labelfree workflows updated to openms 2.1.0

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#54 - Mention concurrency issue with MSGF+

Issue - State: open - Opened by jpfeuffer over 8 years ago

#53 - Add advanced workflow

Issue - State: open - Opened by jpfeuffer over 8 years ago

#52 - Mention error from partial execution of WF

Issue - State: open - Opened by jpfeuffer over 8 years ago

#51 - Mention that KNIME Full and latest OpenMS from UpdateSite might differ

Issue - State: closed - Opened by jpfeuffer over 8 years ago - 1 comment

#50 - Feature/update faq

Pull Request - State: closed - Opened by jpfeuffer over 8 years ago - 1 comment

#49 - Write about "Missing node" error in FAQ

Issue - State: open - Opened by jpfeuffer over 8 years ago

#48 - Write about "Missing parameter" error in FAQ

Issue - State: open - Opened by jpfeuffer over 8 years ago

#47 - Write about hidden OutputTypes tab of some nodes.

Issue - State: closed - Opened by jpfeuffer over 8 years ago - 2 comments

#46 - [NOP] update readme

Pull Request - State: closed - Opened by mwalzer over 8 years ago

#45 - [NOP] removed mac pollution and added to .gitignore

Pull Request - State: closed - Opened by mwalzer over 8 years ago

#44 - Metabolomics: Mostly added/updated node paths, typos

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#43 - QC minor: wording

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#42 - OpenSWATH section, fixed figure reference, .zip Path

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#41 - fixed link to pyOpenMS docu

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#40 - labelfree, minor changes

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago

#38 - [NOP] removed mac pollution and added to .gitignore

Pull Request - State: closed - Opened by mwalzer over 8 years ago

#37 - QC workflow; update mit community-contributions/trunke/ zereisst workflow

Issue - State: closed - Opened by FabianAicheler over 8 years ago - 22 comments

#36 - consensus workflow tutorial setting. specificity fix

Pull Request - State: closed - Opened by FabianAicheler over 8 years ago - 1 comment

#35 - Bonus task: id using several search engines not working with xtandem 10ppm

Issue - State: closed - Opened by FabianAicheler over 8 years ago - 5 comments

#34 - [Feature] Paper update troubleshoot

Pull Request - State: closed - Opened by jpfeuffer over 8 years ago - 1 comment

#33 - From DGMS16: Add picture of what to expect after adding IDs to mzML

Issue - State: open - Opened by jpfeuffer almost 9 years ago - 1 comment

#32 - DGMS16

Pull Request - State: closed - Opened by jpfeuffer almost 9 years ago

#31 - Mention R-Snippet general requirements

Issue - State: open - Opened by jpfeuffer almost 9 years ago - 3 comments

#30 - Add part on decoy database generation at beginning

Issue - State: open - Opened by timosachsenberg over 9 years ago

#29 - TODO: tag revision as UM2015

Issue - State: closed - Opened by timosachsenberg over 9 years ago - 1 comment

#28 - ID fdr not calculated on merged ID files

Issue - State: closed - Opened by timosachsenberg over 9 years ago - 3 comments
Labels: bug

#27 - Java version check possibly errornous

Issue - State: closed - Opened by timosachsenberg over 9 years ago - 1 comment

#24 - why StringToNumber node required after MzTabReader

Issue - State: closed - Opened by timosachsenberg over 9 years ago - 3 comments

#23 - Update myNotes.cls

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#22 - Lastminutechanges

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#21 - Minor style fixes

Pull Request - State: closed - Opened by FabianAicheler over 9 years ago

#19 - R dependencies

Pull Request - State: closed - Opened by mwalzer over 9 years ago

#17 - Added RDKit to needed packages

Pull Request - State: closed - Opened by FabianAicheler over 9 years ago

#16 - Update protein_inference.tex

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#15 - Update qualitycontrol.tex

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#14 - some edit in the protein inference part

Pull Request - State: closed - Opened by liangoaix over 9 years ago

#13 - Few openSWATH specific changes

Pull Request - State: closed - Opened by ppedrioli over 9 years ago

#12 - Changed authors

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#11 - Isabell pyopenms

Pull Request - State: closed - Opened by timosachsenberg over 9 years ago

#10 - Changes to OpenSWATH and pyOpenMS tutorial

Pull Request - State: closed - Opened by ghost over 9 years ago

#9 - [TUTORIAL] added protein inference, updated WFs

Pull Request - State: closed - Opened by hannesveit over 9 years ago

#8 - R node usage should be kept at minimum and self-contained

Issue - State: open - Opened by mwalzer over 9 years ago - 2 comments

#7 - Added short motivation sections

Pull Request - State: closed - Opened by FabianAicheler over 9 years ago

#6 - metabolomics tut section

Pull Request - State: closed - Opened by FabianAicheler over 9 years ago

#5 - Metanodes

Issue - State: closed - Opened by mwalzer over 9 years ago - 1 comment

#4 - added revised qc tutorial and workflow, removed remnants of the old qc

Pull Request - State: closed - Opened by mwalzer over 9 years ago

#2 - Tutorial/lfq

Pull Request - State: closed - Opened by hannesveit over 9 years ago