Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / OpenGene/fastp issues and pull requests
#579 - Disable "too many N" filter
Issue -
State: open - Opened by matthdsm about 21 hours ago
#578 - Different minimum lengths for the forward and reverse reads during filtering
Issue -
State: closed - Opened by MariamFahmy 5 days ago
#577 - Adapter sequences not removed from short SE data
Issue -
State: open - Opened by MafGal 5 days ago
#576 - Fastp does not remove G homopolymers
Issue -
State: open - Opened by Homap 5 days ago
#575 - Output read lengths are affected by duplicate --adapter_sequence arguments
Issue -
State: open - Opened by mwhamgenomics 11 days ago
#574 - What are the default settings?
Issue -
State: open - Opened by jiangzy26 19 days ago
#573 - Ability to use FASTA files as input
Issue -
State: open - Opened by vkkodali 2 months ago
#572 - trimming adapters at the beginning of the read and IUPAC nucleotide codes
Issue -
State: open - Opened by hrehrauer 2 months ago
#571 - Use with fifo?
Issue -
State: open - Opened by GregTD42 3 months ago
- 3 comments
#570 - How can I reproduce the results of trimmomatic in fastp?
Issue -
State: open - Opened by jeong2624 3 months ago
#569 - Feature request: output file listing the IDs of duplicate reads and associated "representative reads"
Issue -
State: open - Opened by charlesfoster 3 months ago
- 1 comment
#568 - How can I generate images of the same size as the insert fragment individually
Issue -
State: open - Opened by Missthepast 3 months ago
#567 - typo in "forogt" -> "forgot"
Issue -
State: closed - Opened by SchwarzMarek 4 months ago
- 1 comment
#566 - Feature request: remove reads with poly_X tails and polyX in general
Issue -
State: open - Opened by roni-fultheim 4 months ago
#565 - ERROR: '+' expected
Issue -
State: open - Opened by spw6422 4 months ago
- 5 comments
#564 - Feature Request: fastp operation on input and output directories
Issue -
State: open - Opened by SuhasSrinivasan 4 months ago
#563 - Running fastp in quiet mode.
Issue -
State: open - Opened by otradnaya 4 months ago
- 2 comments
#562 - Not reproducible
Issue -
State: open - Opened by jnmaloof 5 months ago
- 7 comments
#561 - not support arm?
Issue -
State: open - Opened by YWYONE 5 months ago
- 1 comment
#560 - Error is raised for problematic rows
Issue -
State: open - Opened by TomerAntman 5 months ago
- 3 comments
#559 - few options throw 'undefined error' -reg
Issue -
State: open - Opened by parima678 6 months ago
#558 - fastp not removing all Illumina universal adapter sequences as indicated by FastQC
Issue -
State: open - Opened by luckyvivi 6 months ago
- 5 comments
#557 - No adapter detected for read and Q20 bases: 4747174600(99.9999%)
Issue -
State: open - Opened by h20gg702 6 months ago
#556 - Highlight the new publication
Pull Request -
State: closed - Opened by YongxinLiu 6 months ago
#555 - Nanopore data filtering using fastp
Issue -
State: open - Opened by emilydolivo97 6 months ago
- 1 comment
#554 - Keep occurred error message from the beginning < igzip: invalid gzip header found >
Issue -
State: open - Opened by teddy-han 6 months ago
#553 - Not able to install on Mac book M1
Issue -
State: open - Opened by ranijames 7 months ago
- 4 comments
#552 - interleaved output is not reproducible with multiple threads
Issue -
State: open - Opened by briankegerreis 7 months ago
- 2 comments
#551 - Split interleaved output
Issue -
State: open - Opened by Poshi 7 months ago
#550 - Added a new function(umi_skipb) to the program to skip the specified bp number before trim the UMI sequence.
Pull Request -
State: open - Opened by biolxy 7 months ago
#549 - Store duplicate reads
Issue -
State: open - Opened by johnw2358 7 months ago
#548 - Interpretation help file?
Issue -
State: open - Opened by jullee 7 months ago
#547 - Missing most reads after given r2 adapter
Issue -
State: open - Opened by Flying-Doggy 8 months ago
- 1 comment
#546 - minor typo fix
Pull Request -
State: open - Opened by Gaura 8 months ago
- 1 comment
#545 - cuting doesn't interfere with deduplication
Pull Request -
State: open - Opened by SilasK 8 months ago
#544 - Fix typo
Pull Request -
State: open - Opened by fplaza 8 months ago
- 1 comment
#543 - Feature request: add option to set lower limit of unqualified quality
Issue -
State: open - Opened by ybendana 8 months ago
#542 - Can fastq remove read sequences with duplicate IDs?
Issue -
State: open - Opened by huangrongbioinfomation 8 months ago
#541 - No mouse ouver in kmer matrix
Issue -
State: open - Opened by SilasK 8 months ago
#540 - Very short fragments
Issue -
State: open - Opened by SilasK 8 months ago
#539 - Can fastp draw PNG format?
Issue -
State: open - Opened by huangrongbioinfomation 8 months ago
#538 - aborted core dumped
Issue -
State: open - Opened by ramnageena11 9 months ago
#537 - fastp in my pip package
Issue -
State: open - Opened by theAguy 9 months ago
#536 - Insert size estimation and report interpretation
Issue -
State: open - Opened by lmartinezgili 10 months ago
- 2 comments
#535 - I obtained different 'insert size peaks' when I used different options for the same paired-end sequencing sample.
Issue -
State: open - Opened by Eunyoung-Oh114 10 months ago
#534 - ERROR: '+' expected
Issue -
State: open - Opened by wangsanshui1028 10 months ago
- 1 comment
#533 - check read errors in fastqreader
Pull Request -
State: open - Opened by jchorl 11 months ago
#532 - Does fastp remove primer sequences for aplicon sequencing results?
Issue -
State: open - Opened by timz0605 11 months ago
- 1 comment
#531 - Adapter indels
Issue -
State: open - Opened by korjent 11 months ago
#530 - Is `Read1 before filtering` field in the report filtered at all or is it the raw read count per mate?
Issue -
State: closed - Opened by ilykos 11 months ago
- 1 comment
#529 - Feature Request: UMI Join
Issue -
State: open - Opened by trahsemaj 11 months ago
- 1 comment
#528 - Discrepency in filtering restults and reads after filtering
Issue -
State: open - Opened by xapple 12 months ago
- 3 comments
#527 - Add a Docker container
Pull Request -
State: open - Opened by maol-corteva 12 months ago
#526 - Hi guys, this feature is revised and improved a lot in fastp v0.19.9 (will be released soon), see the update here:
Issue -
State: open - Opened by jrostudent 12 months ago
#525 - Remove the hardcoded trim tail and trim front length limitations
Pull Request -
State: open - Opened by shinthor 12 months ago
#524 - invalid gzip output when output is empty
Issue -
State: open - Opened by sstrong99 about 1 year ago
#523 - Building a fastp binary on Apple Silicon
Issue -
State: closed - Opened by rayhendricks about 1 year ago
- 1 comment
#522 - ./fastp: error while loading shared libraries: libisal.so.2: cannot open shared object file: No such file or directory
Issue -
State: open - Opened by QifengSun about 1 year ago
- 1 comment
#521 - Error trimming reads - invalid gzip error found and sequence and quality have different lengths
Issue -
State: closed - Opened by peflanag about 1 year ago
- 1 comment
#520 - Duplication
Issue -
State: open - Opened by Lxcbeicheng about 1 year ago
#519 - prebuilt fastp binary links for Linux are broken
Issue -
State: open - Opened by kbeavz about 1 year ago
- 2 comments
#518 - fastp can not remove adapter when the read sequence has indels in the adpter
Issue -
State: open - Opened by YangLeng90 about 1 year ago
#517 - Unable to read from named pipes
Issue -
State: open - Opened by wasade about 1 year ago
- 1 comment
#516 - FastQ contains reads header name only - ERROR: sequence and quality have different length
Issue -
State: open - Opened by phucty about 1 year ago
- 2 comments
#515 - Fix ReadPair's never being freed
Pull Request -
State: open - Opened by Donwulff about 1 year ago
#514 - Is the statistics of "adapter_trimmed_reads" in the file correct?
Issue -
State: open - Opened by wangjingint about 1 year ago
#513 - Merged reads restricted to length of the read pairs?
Issue -
State: open - Opened by robinfchan about 1 year ago
- 2 comments
#512 - UMI dedup
Issue -
State: open - Opened by zoeward-nz about 1 year ago
- 1 comment
#511 - PolyG tail trimming on already trimmed fastq files
Issue -
State: open - Opened by DenisGoryunov about 1 year ago
#510 - question about pacbio data
Issue -
State: open - Opened by crazysummerW about 1 year ago
#509 - fastp -i -I has multiple data -o -O how to write
Issue -
State: open - Opened by hai178912522 about 1 year ago
#508 - Update list of sequencers for poly-g trimming
Pull Request -
State: open - Opened by semenko about 1 year ago
#507 - can fastp be used to demultiplex fastq files based on indexes in the sequence header?
Issue -
State: open - Opened by rikrdo89 about 1 year ago
#506 - Unstable and irreproducible results
Issue -
State: open - Opened by roni-fultheim about 1 year ago
- 2 comments
#505 - How to remove contaminated sequencing data
Issue -
State: open - Opened by jiangzy26 about 1 year ago
#504 - issue trying to use fifo for inputs
Issue -
State: open - Opened by splaisan over 1 year ago
- 1 comment
#503 - No adapter detected for read2 and Insert size peak (evaluated by paired-end reads): 103
Issue -
State: open - Opened by sofiapuvogelvittini over 1 year ago
- 1 comment
#502 - Different adaptors detected in paired reads
Issue -
State: open - Opened by sofiapuvogelvittini over 1 year ago
- 2 comments
#501 - Can fastp trim TSO (Template switch oligo)?
Issue -
State: open - Opened by yunshanglzy over 1 year ago
#500 - Cannot install fastp on my computer - channels not found
Issue -
State: closed - Opened by vaizen360 over 1 year ago
#499 - output on command line of fastp is incorrect
Issue -
State: open - Opened by atiqaahmad over 1 year ago
#498 - Length Limit stops working past a certain point
Issue -
State: open - Opened by kaeaton over 1 year ago
#497 - Fix for 2 bugs in the fastq reader:
Pull Request -
State: open - Opened by wdu over 1 year ago
#496 - How important is isa-l?
Issue -
State: open - Opened by outpaddling over 1 year ago
#495 - fix average q-score calculation
Pull Request -
State: open - Opened by DrinnanSante over 1 year ago
#494 - UMI extraction 3' end
Issue -
State: open - Opened by annajbott over 1 year ago
- 1 comment
#493 - cut_right doesn't work as the same as trimmomatic
Issue -
State: open - Opened by Oakento over 1 year ago
#492 - is adapter file is unreadable return core dumped error
Issue -
State: open - Opened by mewu3 over 1 year ago
#491 - ERROR: Read name line should start with '@'
Issue -
State: closed - Opened by qquuzhao over 1 year ago
- 12 comments
#490 - Update fastp pre-build version to v0.23.3
Issue -
State: closed - Opened by siwei-deng over 1 year ago
- 2 comments
#489 - NextSeq auto-detect seems incomplete
Issue -
State: open - Opened by claczny over 1 year ago
#488 - ¿Is it possible to install fastp in windows?
Issue -
State: open - Opened by CamiloOcho over 1 year ago
#487 - Trim Read 1 and Read 2 independently without detecting overlap
Issue -
State: open - Opened by MaWeffm over 1 year ago
#486 - Request: Tag a New Release
Issue -
State: closed - Opened by schorlton over 1 year ago
- 2 comments
#485 - Change error message for interleaved stdout
Pull Request -
State: closed - Opened by ElDeveloper over 1 year ago
- 3 comments
#484 - Typo correction in options.cpp
Pull Request -
State: closed - Opened by B0r1sD over 1 year ago
#483 - [mem_sam_pe] paired reads have different names:
Issue -
State: open - Opened by YeGuoZJU over 1 year ago
#482 - [Bug] Handle empty output from fastp
Pull Request -
State: open - Opened by rzlim08 over 1 year ago
- 1 comment
#481 - Dovetail (adapter) removal not working correctly
Issue -
State: open - Opened by nchernia over 1 year ago
- 1 comment
#480 - Adapter Readthrough Scenario
Issue -
State: open - Opened by nicolasalexandre21 over 1 year ago