Ecosyste.ms: Issues

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GitHub / Open-Systems-Pharmacology/OSPSuite.SimModel issues and pull requests

#166 - Cross plattform native code resolver

Pull Request - State: closed - Opened by benjaperez1983 4 months ago

#165 - Parameter Identification Sensitivity Calculation is not interruptable between points

Issue - State: open - Opened by rwmcintosh 8 months ago - 2 comments
Labels: type: task

#164 - Fixes #163 Ubuntu22

Pull Request - State: closed - Opened by Yuri05 8 months ago - 1 comment

#163 - Add Ubuntu 22 build

Issue - State: closed - Opened by Yuri05 8 months ago

#162 - Why are the values of ODE state variables in [0 .. AbsTol] not set to 0 ?

Issue - State: open - Opened by Yuri05 10 months ago - 4 comments

#161 - fix ubuntu build

Pull Request - State: closed - Opened by Yuri05 almost 1 year ago

#160 - Fixes #159 Disable negative values check for application source

Pull Request - State: closed - Opened by Yuri05 almost 1 year ago

#159 - Disable negative values check for application source

Issue - State: closed - Opened by Yuri05 almost 1 year ago
Labels: type: task

#158 - Weaken negative values check threshold

Issue - State: closed - Opened by Yuri05 almost 1 year ago
Labels: type: task

#157 - Use the root-finding feature of CVODES

Issue - State: open - Opened by Yuri05 about 1 year ago
Labels: type: feature

#156 - Prevent integration over the next restart time point

Issue - State: open - Opened by Yuri05 about 1 year ago

#155 - Format the code properly

Issue - State: open - Opened by Yuri05 about 2 years ago
Labels: type: task

#154 - Fixes #148 NaNs in boolean formulas (also in If-Formulas and MinMax-Formulas)

Pull Request - State: closed - Opened by Yuri05 about 2 years ago - 3 comments

#151 - Non-deterministic simulation runs from SimModel

Issue - State: closed - Opened by rwmcintosh about 2 years ago - 8 comments

#150 - Rename Species to Molecule

Issue - State: open - Opened by msevestre about 2 years ago - 4 comments
Labels: type: task

#148 - NaNs in boolean formulas

Issue - State: closed - Opened by Yuri05 about 2 years ago
Labels: type: bug, prio: high

#147 - Fixes #146 SensitivityAnalysis does not produce any results in certai…

Pull Request - State: closed - Opened by Yuri05 over 2 years ago

#146 - SensitivityAnalysis does not produce any results in certain cases

Issue - State: closed - Opened by PavelBal over 2 years ago - 8 comments
Labels: type: bug, prio: high

#145 - Fixes #144 Use GCC 7 on Ubuntu 18

Pull Request - State: closed - Opened by Yuri05 over 2 years ago

#144 - Use GCC 7 on Ubuntu 18

Issue - State: closed - Opened by Yuri05 over 2 years ago - 3 comments

#143 - Fixes #142 Update Funcparser to the latest version

Pull Request - State: closed - Opened by Yuri05 over 2 years ago

#142 - Update Funcparser to the latest version

Issue - State: closed - Opened by Yuri05 over 2 years ago

#141 - Fixes #127 SimulationRunOptions$checkForNegativeValues = FALSE does not work

Pull Request - State: closed - Opened by Yuri05 over 2 years ago - 2 comments

#140 - Fixes #139 Access violation

Pull Request - State: closed - Opened by Yuri05 over 2 years ago

#139 - Access violation

Issue - State: closed - Opened by Yuri05 over 2 years ago - 2 comments
Labels: type: bug

#137 - When performing switch update: collect state variables, derivatives by which are potentially changed

Issue - State: closed - Opened by Yuri05 over 2 years ago
Labels: rejected, type: task

#136 - Add tests for the "intermediate" results

Issue - State: open - Opened by Yuri05 almost 3 years ago
Labels: type: task

#135 - 134 jacobian calculation of the product formula wrong

Pull Request - State: closed - Opened by Yuri05 almost 3 years ago - 2 comments

#134 - Jacobian calculation of the product formula wrong

Issue - State: closed - Opened by Yuri05 almost 3 years ago - 1 comment
Labels: type: bug

#133 - WIP 128 using parameter derivatives to calculate sensitivities in pi

Pull Request - State: open - Opened by Yuri05 almost 3 years ago - 17 comments

#132 - Fixes #131 Add Build configuration for Purify

Pull Request - State: closed - Opened by Yuri05 almost 3 years ago - 2 comments

#131 - Add Build configuration for Purify

Issue - State: closed - Opened by Yuri05 almost 3 years ago
Labels: type: task

#130 - Improve container usage

Issue - State: open - Opened by Yuri05 almost 3 years ago
Labels: type: task

#128 - Use parmeter derivatives to calculate sensitivities in PI

Issue - State: open - Opened by StephanSchaller almost 3 years ago - 3 comments
Labels: type: task

#127 - SimulationRunOptions$checkForNegativeValues = FALSE does not work

Issue - State: closed - Opened by PavelBal about 3 years ago - 3 comments
Labels: type: bug

#126 - Fixes #125

Pull Request - State: closed - Opened by Yuri05 over 3 years ago - 1 comment

#125 - CPP Export crashes

Issue - State: closed - Opened by Yuri05 over 3 years ago
Labels: type: bug

#124 - Fixes #121 Simulation warnings are not cleared in case of "Autoreduce tolerances"

Pull Request - State: closed - Opened by Yuri05 over 3 years ago - 1 comment

#123 - Fixes #122 Wrong comparison tolerance for constant observers

Pull Request - State: closed - Opened by Yuri05 over 3 years ago

#122 - Wrong comparison tolerance for constant observers

Issue - State: closed - Opened by Yuri05 over 3 years ago
Labels: type: bug

#121 - Simulation warnings are not cleared in case of "Autoreduce tolerances"

Issue - State: closed - Opened by Yuri05 almost 4 years ago - 1 comment
Labels: type: bug

#120 - Wrong Pinvoke signature (results in crash in case of solver warnings)

Issue - State: closed - Opened by Yuri05 almost 4 years ago - 3 comments
Labels: type: bug, prio: high

#119 - List correct output that first crosses the "zero line" for negativeValuesAllowed="0"

Issue - State: closed - Opened by StephanSchaller over 4 years ago
Labels: type: task, effort: low (hours)

#118 - Return the timepoint in the error message for negativeValuesAllowed="0"

Issue - State: closed - Opened by StephanSchaller over 4 years ago
Labels: type: task, effort: low (hours)

#117 - Fixes #116 add script for manual compilation under Linux

Pull Request - State: closed - Opened by Yuri05 over 4 years ago

#116 - add script for manual compilation under Linux

Issue - State: closed - Opened by Yuri05 over 4 years ago

#115 - Version of OSPSuite.SimModel.dll not properly set

Issue - State: closed - Opened by Yuri05 over 4 years ago

#114 - Fixes #328 population run crashes under Linux

Pull Request - State: closed - Opened by Yuri05 over 4 years ago

#113 - Fixes #111 update to latest funcparser

Pull Request - State: closed - Opened by Yuri05 over 4 years ago

#112 - throw OSPSuiteException in case of errors

Issue - State: closed - Opened by Yuri05 over 4 years ago

#111 - update to latest funcparser

Issue - State: closed - Opened by Yuri05 over 4 years ago

#110 - Fixes #87 Transfer remaining tests

Pull Request - State: closed - Opened by Yuri05 over 4 years ago

#109 - Linux: cannot load simulation from file

Issue - State: open - Opened by Yuri05 almost 5 years ago
Labels: type: bug

#108 - Fixes #107 FillSensitivityValues not exported

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago - 3 comments

#107 - FillSensitivityValues not exported

Issue - State: closed - Opened by Yuri05 almost 5 years ago
Labels: type: bug

#106 - Fixes #105 Memory Leak in aging simulations

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#105 - Memory Leak in aging simulations

Issue - State: closed - Opened by Yuri05 almost 5 years ago
Labels: type: bug

#104 - Fixes #100 Perform memory-leak analysis

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#103 - fix appveyor issue Linux

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#102 - Fixes #101 Add missing finalizer in the Simulation

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#101 - Add missing finalizer in the Simulation

Issue - State: closed - Opened by Yuri05 almost 5 years ago
Labels: type: bug

#100 - Perform memory-leak analysis

Issue - State: closed - Opened by Yuri05 almost 5 years ago

#99 - Export to CPP results in a crash

Issue - State: closed - Opened by msevestre almost 5 years ago - 1 comment

#98 - Fixes #97 adjust for compilation on CentOS

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#97 - adjust for compilation on CentOS

Issue - State: closed - Opened by Yuri05 almost 5 years ago

#96 - Fixes #95

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#95 - Fix4mono tbd

Issue - State: closed - Opened by Yuri05 almost 5 years ago

#94 - Fixes #93 Increase verbosity level for tests

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago

#93 - Increase verbosity level for tests

Issue - State: closed - Opened by Yuri05 almost 5 years ago

#92 - Fixes #91 Create Linux package

Pull Request - State: closed - Opened by Yuri05 almost 5 years ago - 1 comment

#91 - Create Linux package

Issue - State: closed - Opened by Yuri05 almost 5 years ago
Labels: type: task

#90 - Fixes #88 Make tests run on AppVeyor again

Pull Request - State: closed - Opened by Yuri05 about 5 years ago

#89 - Cannot calculate sensitivity after PI

Issue - State: open - Opened by Yuri05 about 5 years ago - 6 comments
Labels: type: bug, prio: high

#88 - Make tests run on AppVeyor again

Issue - State: closed - Opened by Yuri05 about 5 years ago
Labels: type: bug

#87 - Transfer remaining tests

Issue - State: closed - Opened by Yuri05 about 5 years ago
Labels: type: task

#86 - Move from C++/CLI to .NET Core/PInvoke

Issue - State: closed - Opened by Yuri05 about 5 years ago
Labels: type: task

#85 - Fixes #86 Move from C++/CLI to .NET Core/PInvoke

Pull Request - State: closed - Opened by Yuri05 about 5 years ago - 1 comment

#84 - Ensure that solver lib can be loaded from the current directory

Issue - State: closed - Opened by msevestre about 5 years ago - 1 comment
Labels: type: bug, prio: high

#83 - Fixes #58 Move to CVODES 4.0

Pull Request - State: closed - Opened by Yuri05 over 5 years ago

#82 - Fixes #79 Refactor and Fix Changes made in #78

Pull Request - State: closed - Opened by Yuri05 over 5 years ago - 2 comments

#81 - Calculate only used observers

Issue - State: closed - Opened by Yuri05 over 5 years ago
Labels: type: task

#80 - Reduce number of ODE Variables

Issue - State: open - Opened by Yuri05 over 5 years ago
Labels: type: task

#79 - Refactor and Fix Changes made in #78

Issue - State: closed - Opened by Yuri05 over 5 years ago
Labels: type: bug, type: task

#78 - Fixes-#35-Constant-variables-(with-RHS-=-0)-are-not-scaled-properly

Pull Request - State: closed - Opened by PavelBal almost 6 years ago - 3 comments

#77 - Improve numerical accuracy when dealing with observers

Issue - State: open - Opened by msevestre almost 6 years ago - 2 comments
Labels: type: task

#76 - #61 stdint.h

Pull Request - State: closed - Opened by Yuri05 almost 6 years ago - 2 comments

#75 - Fixes #71 Remove 32 bit support

Pull Request - State: closed - Opened by Yuri05 almost 6 years ago

#74 - Fix for issue #73 "cppToolbox export fails for observers of observers"

Pull Request - State: closed - Opened by hdiedam almost 6 years ago

#73 - cppToolbox export fails for observers of observers

Issue - State: closed - Opened by hdiedam almost 6 years ago - 1 comment

#72 - Compilation for linux fails with 7.4

Issue - State: closed - Opened by hdiedam almost 6 years ago - 1 comment

#71 - Remove x32 bit support

Issue - State: closed - Opened by msevestre almost 6 years ago
Labels: type: task

#70 - PR should not create a new nuget package

Issue - State: closed - Opened by msevestre almost 6 years ago - 1 comment

#69 - Compile and test for 64bit only

Issue - State: closed - Opened by Yuri05 almost 6 years ago - 1 comment
Labels: type: task

#68 - Fixes #67 execution time limit

Pull Request - State: closed - Opened by Yuri05 almost 6 years ago
Labels: type: bug

#67 - initSimulation with ExecutionTimeLimit appears not to work

Issue - State: closed - Opened by UlrichSi over 7 years ago
Labels: type: bug

#65 - Update PowerFormula.cpp

Pull Request - State: closed - Opened by hdiedam almost 6 years ago

#64 - Update MathHelper.cpp

Pull Request - State: closed - Opened by hdiedam almost 6 years ago

#63 - Update FormulaChange.cpp

Pull Request - State: closed - Opened by hdiedam almost 6 years ago