Ecosyste.ms: Issues
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GitHub / OmarOakheart/nPhase issues and pull requests
#27 - Any advice on how to create a haplotype-resolved assembly form the phase FastQ reads
Issue -
State: open - Opened by mdondrup 8 months ago
- 4 comments
#26 - nphase takes a long time at GATK step
Issue -
State: open - Opened by mdondrup 9 months ago
- 4 comments
#25 - No plots and phased FastQ generated, AttributeError: 'DataFrame' object has no attribute 'append'
Issue -
State: closed - Opened by mdondrup 10 months ago
- 9 comments
#24 - NameError: name 'cachedSimilarities' is not defined
Issue -
State: open - Opened by NaphatCode over 1 year ago
- 5 comments
#23 - Extract phased variants or reads
Issue -
State: open - Opened by Adamtaranto almost 2 years ago
- 5 comments
#22 - Duration and Heterozygosity
Issue -
State: open - Opened by rmormando about 2 years ago
- 28 comments
#21 - Can run nPhase due to lack of matplotlib._contour
Issue -
State: closed - Opened by ulaszewski about 2 years ago
- 4 comments
#20 - Output FQ file is empty
Issue -
State: closed - Opened by kangxiongbin over 2 years ago
- 4 comments
#19 - Applying to contigs or chromosome-level scaffolds
Issue -
State: closed - Opened by OZTaekOppa over 2 years ago
- 19 comments
#18 - Number of haplotig
Issue -
State: closed - Opened by Lcornet over 2 years ago
- 6 comments
#17 - Process killed after variant calling on short reads
Issue -
State: closed - Opened by elsasverris over 2 years ago
- 2 comments
#16 - Is it possible to run nPhase without short reads?
Issue -
State: closed - Opened by zhaotao1987 almost 3 years ago
- 59 comments
#15 - No clusters found
Issue -
State: closed - Opened by Lcornet almost 3 years ago
- 20 comments
#14 - Nphase partial error
Issue -
State: closed - Opened by Mondlii almost 3 years ago
- 11 comments
#13 - nPhase needs a guide/tutorial for working on large/very heterozygous genomes
Issue -
State: open - Opened by OmarOakheart almost 3 years ago
- 2 comments
#12 - nPhase on one chromosome
Issue -
State: open - Opened by elsasverris almost 3 years ago
- 3 comments
#11 - nPhase is too slow/memory intensive
Issue -
State: open - Opened by OmarOakheart about 3 years ago
- 1 comment
#10 - nPhase has no option to set max heterozygosity level
Issue -
State: open - Opened by OmarOakheart about 3 years ago
#9 - ZeroDivisionError in assignLongReadToSNPs when samLines < 100
Issue -
State: open - Opened by a-lud about 3 years ago
- 1 comment
#8 - Running nphase partial with a .bam file or a .sam file that isn't sorted or has a header
Issue -
State: open - Opened by OmarOakheart over 3 years ago
#7 - Running nPhase partial with mapped short reads
Issue -
State: closed - Opened by jdenkena over 3 years ago
#6 - Running nPhase partial with mapped short reads
Issue -
State: open - Opened by jdenkena over 3 years ago
- 4 comments
#5 - Short reads unsuccessfully mapped to reference
Issue -
State: closed - Opened by Lcornet almost 4 years ago
- 5 comments
#4 - error in : Identified heterozygous SNPs in short read VCF
Issue -
State: closed - Opened by Lcornet almost 4 years ago
- 9 comments
#3 - errors in partial and full pipeline
Issue -
State: closed - Opened by danessel about 4 years ago
- 2 comments
#2 - fastQ file creation failed
Issue -
State: closed - Opened by OmarOakheart about 4 years ago
- 3 comments
#1 - averageScore+=QScores[Q] KeyError: 'Q'
Issue -
State: closed - Opened by OmarOakheart about 4 years ago
- 1 comment
Labels: bug