OSOceanAcoustics/echopype issues and pull requests

#1009 - Error during interpolation in `consolidate.add_latlon` with an edge case

Issue - State: open - Opened by emiliom over 2 years ago - 1 comment
Labels: bug

#1008 - Draft docs page for processing levels and updated processing_level_url

Pull Request - State: closed - Opened by emiliom over 2 years ago - 3 comments
Labels: docs, product levels

#1007 - Update windows-utils.yaml

Pull Request - State: closed - Opened by emiliom over 2 years ago - 5 comments

#1006 - Add what's new for v0.7.0

Pull Request - State: closed - Opened by leewujung over 2 years ago

#1005 - Add `compute_NASC`

Pull Request - State: closed - Opened by leewujung over 2 years ago - 9 comments
Labels: processing functions

#1004 - Fix test failure due to `ecs_file` requirement

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: Needs Complete Testing

#1003 - `echodata.update_platform` adds a `water_level` with incorrectly assigned `time1` dimension

Issue - State: closed - Opened by emiliom over 2 years ago - 1 comment
Labels: bug

#1002 - compute_MVBS should propagate and bin average Sv latitude and longitude, and depth/water_level

Issue - State: closed - Opened by emiliom over 2 years ago - 3 comments
Labels: enhancement

#1001 - Implementation of data-processing-level attributes

Pull Request - State: closed - Opened by emiliom over 2 years ago - 11 comments
Labels: enhancement, product levels

#1000 - Add more add_location tests

Pull Request - State: closed - Opened by emiliom over 2 years ago - 3 comments
Labels: tests

#999 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#998 - Fix CW-based beamwidth scaling

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#997 - Scaling of CW-based beamwidth parameters inverted

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: bug

#996 - Allow using ECS for calibrating Simrad echosounders

Pull Request - State: closed - Opened by leewujung over 2 years ago - 3 comments

#995 - sonar_model handling, grouping

Issue - State: open - Opened by emiliom over 2 years ago - 9 comments
Labels: enhancement

#994 - Add test for splitbeam angle ek80_CW_power case

Pull Request - State: closed - Opened by leewujung over 2 years ago - 2 comments
Labels: tests

#993 - Move `preprocess` functions and tests new `clean` and `commongrid` subpackages

Pull Request - State: closed - Opened by emiliom over 2 years ago - 7 comments
Labels: design

#992 - Standardize use of sonar metadata as `Sonar` global attributes vs (for EK80 only) variables

Pull Request - State: closed - Opened by emiliom over 2 years ago - 2 comments
Labels: conventions

#991 - Add attributes for cal and env parameters in calibration output

Issue - State: open - Opened by leewujung over 2 years ago - 1 comment
Labels: conventions

#990 - Release/v0.6.4.1

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#989 - Add what's new for v0.6.4.1

Pull Request - State: closed - Opened by leewujung over 2 years ago
Labels: docs

#988 - Unpinning netCDF4 version causes failure

Issue - State: open - Opened by lsetiawan over 2 years ago - 2 comments
Labels: bug

#987 - Fix bug to pass in `env_params` from parent class method for EK60

Pull Request - State: closed - Opened by leewujung over 2 years ago

#986 - Handling of non-positive values causing log10 warnings on EK calibration

Pull Request - State: closed - Opened by emiliom over 2 years ago - 4 comments
Labels: bug

#985 - Ensure `env_params` intake for calibration

Pull Request - State: closed - Opened by leewujung over 2 years ago - 4 comments
Labels: enhancement

#984 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#983 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#982 - Bump actions/cache from 3.2.5 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#981 - Unpin xarray version [all tests ci]

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 3 comments

#980 - Add global attribute for data processing level

Issue - State: closed - Opened by emiliom over 2 years ago - 7 comments
Labels: enhancement, product levels

#979 - Import `echoregions` when masking functionality is needed

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: infrastructure

#978 - Remove `beam` dimension in EK80 angle-related calibration parameters

Issue - State: closed - Opened by emiliom over 2 years ago - 5 comments
Labels: conventions

#977 - Release/v0.6.4

Pull Request - State: closed - Opened by leewujung over 2 years ago - 2 comments

#976 - Overhaul `combine_echodata` code

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: bug, enhancement

#975 - `combine_echodata` errors out when more than 2 `EchoData` objects are to be combined

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: bug

#974 - Add v0.6.4 release notes

Pull Request - State: closed - Opened by leewujung over 2 years ago
Labels: docs

#973 - Priority documentation updates

Issue - State: open - Opened by emiliom over 2 years ago - 2 comments
Labels: docs

#972 - Update `user_dict` validation to use pydantic model

Issue - State: open - Opened by lsetiawan over 2 years ago
Labels: enhancement

#971 - Refactor split-beam processing and add BB with pc option

Pull Request - State: closed - Opened by leewujung over 2 years ago - 3 comments
Labels: computation

#970 - Fix `combine_echodata` b/w combined and single echodata object.

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 4 comments
Labels: bug

#969 - Add test for `echo_range` for EK80 reduced sampling rate data

Issue - State: open - Opened by leewujung over 2 years ago - 1 comment
Labels: tests

#968 - Unify `echo_range` order of dimensions across sonar models

Pull Request - State: closed - Opened by leewujung over 2 years ago - 8 comments
Labels: enhancement

#967 - Improve input syntax for frequency differencing operation

Issue - State: closed - Opened by leewujung over 2 years ago - 15 comments
Labels: enhancement

#966 - Refactor and clean up parsed2zarr implementation

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: enhancement, tracking issue

#965 - Improve `env_params` intake and add test

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: enhancement, tests

#964 - Update docker build for arm64 mac silicon chips

Pull Request - State: closed - Opened by lsetiawan over 2 years ago

#963 - Update Windows CI so it can also work to run the full test suite

Issue - State: open - Opened by lsetiawan over 2 years ago
Labels: enhancement, infrastructure

#962 - Update the name of `offload_to_zarr` to `use_swap` and `max_zarr_mb` to `max_mb`

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 1 comment
Labels: enhancement

#961 - Zarr rechunk issue in `combine_echodata`

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment
Labels: enhancement

#960 - Add distributed functionality for spilled data to swap

Issue - State: closed - Opened by lsetiawan over 2 years ago - 2 comments
Labels: enhancement

#959 - Add functionality to check for local "swap" capacity

Issue - State: closed - Opened by lsetiawan over 2 years ago - 2 comments
Labels: enhancement

#958 - Rename offload_to_zarr to use_swap to make it more user friendly

Issue - State: closed - Opened by lsetiawan over 2 years ago - 1 comment
Labels: enhancement

#957 - Enhance offload_to_zarr to make it more user friendly and better

Issue - State: closed - Opened by lsetiawan over 2 years ago - 2 comments
Labels: enhancement

#956 - Fix Windows CI

Issue - State: closed - Opened by lsetiawan over 2 years ago
Labels: bug, infrastructure

#955 - Allow passing in `cal_params` for calibration

Pull Request - State: closed - Opened by leewujung over 2 years ago - 3 comments
Labels: enhancement, processing functions

#954 - Update software behavior to use the default echopype home directory

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 2 comments
Labels: enhancement

#953 - Tidy up `cal_params` related routines for calibration

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#952 - Revise `env_params` related routines in calibration

Pull Request - State: closed - Opened by leewujung over 2 years ago - 2 comments
Labels: enhancement, processing functions

#951 - Add some variables not currently stored from ping-by-ping data

Issue - State: closed - Opened by leewujung over 2 years ago - 15 comments
Labels: data conversion, conventions

#950 - Calibration issues with "gain_correction" parameters (EK80)

Issue - State: closed - Opened by liliaguillet over 2 years ago - 6 comments
Labels: bug

#949 - Bump actions/cache from 3.2.5 to 3.2.6

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 3 comments
Labels: dependencies

#948 - Retire `EchoData.compute_range` entirely

Issue - State: closed - Opened by leewujung over 2 years ago - 1 comment

#947 - Fix windows github actions workflow

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 2 comments
Labels: infrastructure

#946 - Remove mamba dependency

Pull Request - State: closed - Opened by lsetiawan over 2 years ago
Labels: infrastructure

#945 - Sync dev to main to pull in Github Actions updates

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 2 comments

#944 - Improving pulse compressed Sv computation and echo range computation

Pull Request - State: closed - Opened by leewujung over 2 years ago - 9 comments
Labels: computation

#943 - Calibration issues with environmental parameters (EK80)

Issue - State: closed - Opened by liliaguillet over 2 years ago - 5 comments
Labels: bug

#942 - Bump actions/cache from 3.2.4 to 3.2.5

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#941 - Add rechunking option for the `EchoData` object

Issue - State: closed - Opened by valentina-s over 2 years ago - 4 comments
Labels: enhancement

#940 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#939 - Add default chunk encoding for zarr output

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 1 comment
Labels: enhancement

#938 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#937 - Bump actions/cache from 3.2.3 to 3.2.4

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#936 - Bump docker/build-push-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#935 - Bump mamba-org/provision-with-micromamba from 14 to 15

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#934 - Fix pre-commit ci and update RTD config for jupyter-book

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 1 comment

#933 - Develop mechanism to test for attributes more efficiently and comprehensively

Issue - State: open - Opened by emiliom over 2 years ago - 1 comment
Labels: enhancement, conventions, tests

#932 - Bump actions/setup-python from 4.4.0 to 4.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#931 - Bump actions/cache from 3.2.1 to 3.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#930 - Handling of provenance attributes in apply-mask and add-depth, especially for testing

Pull Request - State: closed - Opened by emiliom over 2 years ago - 10 comments
Labels: bug, tests

#929 - Add `mask` and `consolidate` folders / subpackages to the set of target modules in run-test [all tests ci]

Pull Request - State: closed - Opened by emiliom over 2 years ago - 4 comments
Labels: tests

#928 - Bump actions/cache from 3.2.1 to 3.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#927 - Update CITATION.cff

Pull Request - State: closed - Opened by emiliom over 2 years ago - 7 comments
Labels: docs

#926 - Small fixes following calibration refactoring and mask history

Pull Request - State: closed - Opened by leewujung over 2 years ago - 3 comments

#925 - Add option to allow transmit parameters to vary across pings in calibrating BB data

Issue - State: open - Opened by leewujung over 2 years ago
Labels: enhancement, processing functions

#923 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#922 - Bump actions/setup-python from 4.3.1 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#921 - Bump actions/cache from 3.0.11 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#920 - Add missing `pytest` in `test_combine_integration.py`

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#919 - Fix missing `pytest` in `test_combine_integration.py`

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#918 - Add dataset and variable-level provenance to new mask and add_splitbeam_angle functions

Pull Request - State: closed - Opened by emiliom over 2 years ago - 6 comments
Labels: enhancement

#917 - Redo: Add unit tests for functions used in `apply_mask`

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#916 - Redo: Implement `add_splitbeam_angle` function

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#915 - Redo: Ignore docs/source/_build

Pull Request - State: closed - Opened by leewujung over 2 years ago - 2 comments

#914 - Redo: Fix mkdir to not raise error and skip directory creation if exists

Pull Request - State: closed - Opened by leewujung over 2 years ago - 1 comment

#913 - Redo: Fix meta_source_filenames bug and enable (meta)source_filenames appending of path and list

Pull Request - State: closed - Opened by leewujung over 2 years ago

#912 - Redo: Add `apply_mask` function to `mask` sub-package

Pull Request - State: closed - Opened by leewujung over 2 years ago

#911 - Add unit tests for functions used in `apply_mask`

Pull Request - State: closed - Opened by b-reyes over 2 years ago - 1 comment

#910 - Ignore docs/source/_build

Pull Request - State: closed - Opened by lsetiawan over 2 years ago

#909 - Fix mkdir to not raise error and skip directory creation if exists

Pull Request - State: closed - Opened by lsetiawan over 2 years ago - 1 comment

GitHub / OSOceanAcoustics/echopype issues and pull requests