Ecosyste.ms: Issues

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GitHub / OHDSI/Cyclops issues and pull requests

#78 - Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#77 - Fix getCyclopsProfileLogLikelihood crashes when all slope values are NA

Pull Request - State: open - Opened by azimov 5 months ago - 1 comment

#75 - Add option for `getCyclopsProfileLogLikelihood`

Issue - State: open - Opened by azimov 6 months ago - 6 comments

#74 - Avoid using tr1 even on Windows.

Pull Request - State: closed - Opened by kalibera 10 months ago - 2 comments

#73 - Faster likelihood profiling?

Issue - State: closed - Opened by schuemie about 1 year ago - 3 comments

#72 - Fix for edge case when likelihood is infinite when profiling

Pull Request - State: closed - Opened by schuemie about 1 year ago - 2 comments

#70 - listOpenCLDevices returns character(0)

Issue - State: open - Opened by huanpipt about 1 year ago

#69 - Cox model handling of intervals?

Issue - State: closed - Opened by schuemie about 1 year ago - 2 comments

#68 - considerable time spent in `setPrior` for IHT and BAR

Issue - State: closed - Opened by egillax over 1 year ago - 3 comments

#67 - arrow_S4 branch cross-validation generating unexpected output to the console

Issue - State: closed - Opened by schuemie over 1 year ago - 1 comment

#66 - remove dependency on boost-headers `BH`

Issue - State: open - Opened by msuchard almost 2 years ago

#65 - as(<numLike>, "dgeMatrix") is deprecated

Issue - State: open - Opened by schuemie almost 2 years ago

#64 - what is the meaning of "POOR_BLR_STEP"?

Issue - State: open - Opened by warya7 about 2 years ago

#62 - Merge fix for likelihood profile computation into main at some point?

Issue - State: open - Opened by schuemie over 2 years ago - 1 comment

#61 - Create new release?

Issue - State: closed - Opened by schuemie over 2 years ago - 4 comments

#60 - Resolve an issue with starting betas being reset

Pull Request - State: closed - Opened by lhjohn over 2 years ago - 3 comments

#59 - Add location parameters for coefficient specific priors

Issue - State: open - Opened by egillax over 2 years ago - 2 comments

#58 - Resetting Cyclops object when adaptive profiling detects drift

Pull Request - State: closed - Opened by schuemie over 2 years ago

#57 - Small differences in prediction between operating systems

Issue - State: open - Opened by schuemie over 2 years ago - 3 comments

#56 - (Tiny) differences in optimal hyperparameter depending on number of threads

Issue - State: closed - Opened by schuemie almost 3 years ago - 2 comments

#55 - Add test for proportionality assumption

Issue - State: open - Opened by schuemie almost 3 years ago - 2 comments
Labels: enhancement

#54 - 'NAs produced by integer overflow' when calling `confint()`

Issue - State: closed - Opened by schuemie about 3 years ago - 3 comments
Labels: bug

#52 - Issue with covertToCyclopsData - ORDER By is Ignored in sub queries

Issue - State: closed - Opened by azimov over 3 years ago - 3 comments

#51 - more efficient support for time-varying covariates in cyclopsdata for cox models

Issue - State: open - Opened by myoung3 almost 4 years ago - 1 comment

#50 - issue with survfit()

Issue - State: closed - Opened by jreps almost 4 years ago - 4 comments

#49 - Cross-validation for conditional PR and LR failing

Issue - State: closed - Opened by schuemie almost 5 years ago - 1 comment

#48 - Add a function to profile likelihood

Issue - State: closed - Opened by schuemie almost 5 years ago - 3 comments
Labels: enhancement

#47 - Re-added usage of cmprsk package for testing

Pull Request - State: closed - Opened by erickawaguchi over 5 years ago

#46 - Checks passed through travis.

Pull Request - State: closed - Opened by erickawaguchi over 5 years ago - 2 comments

#45 - Initial attempt to allow Fine-Gray regression

Pull Request - State: closed - Opened by erickawaguchi over 5 years ago - 1 comment

#44 - Fine gray

Pull Request - State: closed - Opened by jianxiaoyang over 5 years ago

#43 - Updated fastBAR prior

Pull Request - State: closed - Opened by erickawaguchi almost 6 years ago - 1 comment

#42 - added infrastructure for fast BAR updates

Pull Request - State: closed - Opened by erickawaguchi almost 6 years ago

#41 - Error install Cyclops 2.0.0 or 2.0.1 using"Build&Relaod"

Issue - State: closed - Opened by jepark315 almost 6 years ago

#40 - Implemented fastBAR prior with necessary tests.

Pull Request - State: closed - Opened by erickawaguchi about 6 years ago - 2 comments

#39 - Using old control object throws uninformative error

Issue - State: closed - Opened by schuemie about 6 years ago - 1 comment

#38 - Cyclops error in createPs function of CohortMethod package

Issue - State: closed - Opened by aperotte about 6 years ago - 2 comments

#37 - Gpu

Pull Request - State: closed - Opened by yuxitian about 7 years ago

#36 - Could we push version 1.2.3 to CRAN?

Issue - State: closed - Opened by schuemie over 7 years ago - 1 comment

#35 - Report seed used in cross-validation

Issue - State: closed - Opened by schuemie over 7 years ago - 2 comments
Labels: enhancement

#34 - Cleanup warnings

Pull Request - State: closed - Opened by chrisknoll about 8 years ago - 5 comments

#33 - Receiving warnings when building from source in R 3.3.1

Issue - State: closed - Opened by chrisknoll about 8 years ago - 4 comments

#32 - Use `futile.logger` to within `Cyclops`

Issue - State: open - Opened by msuchard over 8 years ago
Labels: enhancement

#31 - Automatically detect prefect predictability in logistic regression

Issue - State: open - Opened by msuchard over 8 years ago
Labels: enhancement

#30 - error message when running Cyclops

Issue - State: closed - Opened by PRijnbeek over 8 years ago - 3 comments

#29 - Rtools 3.4

Issue - State: closed - Opened by PRijnbeek over 8 years ago - 4 comments

#28 - Install error on linux ( RHEL 6 and R 3.2 )

Issue - State: closed - Opened by rstarr7 almost 9 years ago - 3 comments

#27 - Automatically normalize covariate values

Issue - State: open - Opened by schuemie almost 9 years ago
Labels: enhancement

#26 - Error with Cyclops Install on Windows with R 3.2.3

Issue - State: closed - Opened by jduke99 almost 9 years ago - 11 comments

#25 - Faster computation of confidence intervals

Issue - State: closed - Opened by schuemie about 9 years ago - 4 comments
Labels: enhancement

#24 - Adjust trust-region when first couple log-likelihood evaluations are not computable.

Issue - State: closed - Opened by msuchard about 9 years ago - 1 comment
Labels: bug

#23 - Fix name of intercept returned from univariableCorrelation()

Issue - State: closed - Opened by msuchard about 9 years ago - 1 comment
Labels: bug

#22 - Implement covariate scaling in regularlization

Issue - State: closed - Opened by msuchard about 9 years ago - 1 comment
Labels: enhancement

#21 - Implement group fused lasso for specific parameter groups

Issue - State: closed - Opened by msuchard about 9 years ago - 1 comment
Labels: enhancement

#20 - Include covr package

Pull Request - State: closed - Opened by stevepeak over 9 years ago - 7 comments

#19 - Compilation error on win-builder

Issue - State: closed - Opened by msuchard over 9 years ago

#18 - How to enable GPU in the current R package?

Issue - State: closed - Opened by mingcao over 9 years ago - 3 comments

#17 - Cross val weightsv2

Pull Request - State: closed - Opened by ApproximateIdentity over 9 years ago - 9 comments

#16 - Fit a model on one set of data and predict on another?

Issue - State: closed - Opened by ApproximateIdentity over 9 years ago - 28 comments

#15 - Fancy iterators

Issue - State: closed - Opened by msuchard almost 10 years ago - 1 comment

#14 - Add an option to automatically pick selectorType in createControl

Issue - State: open - Opened by schuemie almost 10 years ago
Labels: enhancement

#13 - Cv.txt is created by default

Issue - State: closed - Opened by schuemie almost 10 years ago - 1 comment

#12 - Use KKT conditions to speed up mode search

Issue - State: open - Opened by msuchard almost 10 years ago - 4 comments
Labels: enhancement

#11 - Allow user to specify initial values for betas

Issue - State: closed - Opened by schuemie almost 10 years ago - 1 comment
Labels: enhancement

#10 - Cox regression cross-validation seems broken

Issue - State: closed - Opened by schuemie almost 10 years ago - 8 comments

#9 - Embarrassing parallelization of cross-validation folds

Issue - State: closed - Opened by msuchard almost 10 years ago - 16 comments
Labels: enhancement

#8 - When excluding vars from regularization, reported prior variance is always 0

Issue - State: closed - Opened by schuemie almost 10 years ago - 1 comment

#7 - Consistent cross-validation folds

Issue - State: closed - Opened by msuchard almost 10 years ago - 1 comment
Labels: enhancement

#6 - Cross validation output is incorrect when fitting inside a function

Issue - State: closed - Opened by schuemie about 10 years ago - 4 comments
Labels: bug

#5 - Could we rename prior() to createPrior()?

Issue - State: closed - Opened by schuemie about 10 years ago - 2 comments

#4 - Efron's method of handling ties in survival data

Issue - State: open - Opened by msuchard about 10 years ago
Labels: enhancement

#3 - Compilation on Mac OS X <= 10.8

Issue - State: closed - Opened by msuchard about 10 years ago - 1 comment
Labels: bug

#2 - Add PKG_CXXFLAGS to Makevars

Pull Request - State: closed - Opened by ApproximateIdentity about 10 years ago - 1 comment

#1 - Notes and performance tests on Cyclops from MacBook Pro

Issue - State: closed - Opened by daniellameeker about 10 years ago - 3 comments