Ecosyste.ms: Issues

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GitHub / OHBA-analysis/osl-dynamics issues and pull requests

#284 - osl_inverse_model error (MATLAB implementation)

Issue - State: closed - Opened by Shrecki 16 days ago - 1 comment

#283 - Automated bad segment removal.

Pull Request - State: closed - Opened by cgohil8 2 months ago

#282 - Fixed HMM dual estimation bug with one session.

Pull Request - State: closed - Opened by cgohil8 3 months ago

#281 - HMM dual estimation errors

Issue - State: closed - Opened by saltwater-tensor 3 months ago - 3 comments
Labels: bug

#280 - BUG：power.save problems

Issue - State: closed - Opened by dgai91 3 months ago - 2 comments

#279 - Is it normal for the loss to decrease so slowly?

Issue - State: closed - Opened by dgai91 3 months ago - 5 comments

#278 - Validation Split

Pull Request - State: closed - Opened by cgohil8 3 months ago
Labels: enhancement

#277 - Validation Split

Issue - State: closed - Opened by cgohil8 3 months ago

#276 - Sign Flipping

Pull Request - State: closed - Opened by cgohil8 3 months ago

#275 - Option to fix the dipole sign ambiguity within osl-dynamics

Issue - State: closed - Opened by cgohil8 3 months ago
Labels: enhancement

#274 - Updated Mac TensorFlow installation instructions.

Pull Request - State: closed - Opened by cgohil8 3 months ago

#273 - Updated Regression Spectra Coherence Calculation

Pull Request - State: closed - Opened by cgohil8 3 months ago

#272 - Feat: Save model with checkpoints.

Pull Request - State: closed - Opened by RukuangHuang 3 months ago

#271 - Compatibility with newer TF (2.11-2.15)

Pull Request - State: closed - Opened by cgohil8 3 months ago

#270 - Partial directed coherence

Pull Request - State: closed - Opened by cgohil8 3 months ago

#269 - Fine tuning HMM

Issue - State: closed - Opened by saltwater-tensor 3 months ago - 6 comments

#268 - State Spectra (Multitaper, Welch) Rescaling

Pull Request - State: closed - Opened by cgohil8 3 months ago

#267 - Viterbi path of HMM

Pull Request - State: closed - Opened by RukuangHuang 3 months ago

#266 - TDE dimensions

Issue - State: closed - Opened by saltwater-tensor 3 months ago - 2 comments

#265 - Allow 3D parcellations

Pull Request - State: closed - Opened by cgohil8 3 months ago

#264 - Option to average over time in loss + removed S/MAGE

Pull Request - State: closed - Opened by cgohil8 3 months ago

#262 - errors when running random_state_time_course_initialization

Issue - State: open - Opened by suhnyoungjun 3 months ago - 7 comments

#260 - Fixed missing logger.

Pull Request - State: closed - Opened by cgohil8 4 months ago

#259 - _logger not defined in osl-dynamics/osl_dynamics/data /tf.py

Issue - State: closed - Opened by woolrich 4 months ago
Labels: bug

#258 - OSF Tutorials

Pull Request - State: closed - Opened by cgohil8 4 months ago

#257 - Tinda update

Pull Request - State: closed - Opened by matsvanes 4 months ago

#256 - Tutorials

Pull Request - State: closed - Opened by cgohil8 4 months ago

#254 - M-DyNeMo wrapper

Pull Request - State: closed - Opened by RukuangHuang 4 months ago

#253 - Upgrade TensorFlow Version

Pull Request - State: closed - Opened by cgohil8 4 months ago

#252 - Training on large datasets and keeping the model weights intact

Issue - State: closed - Opened by saltwater-tensor 5 months ago - 2 comments

#251 - Cleaned up M-DyNeMo code.

Pull Request - State: closed - Opened by RukuangHuang 5 months ago

#250 - The difference of psd between different states in DyNeMo

Issue - State: closed - Opened by JieLiang-ustc 5 months ago - 1 comment

#249 - Subject specific transition matrices (HMM)

Issue - State: closed - Opened by saltwater-tensor 5 months ago - 2 comments

#248 - HIVE enhance

Pull Request - State: closed - Opened by RukuangHuang 6 months ago

#247 - M1 macbook using GPU for training: problem and solution

Issue - State: closed - Opened by yingjoeyzhou 6 months ago - 1 comment

#246 - Allow unit norm embeddings.

Pull Request - State: closed - Opened by RukuangHuang 6 months ago

#245 - structural parcellation file

Issue - State: closed - Opened by sunflower-smile 6 months ago - 13 comments

#244 - Fixing bugs in HIVE and DIVE

Pull Request - State: closed - Opened by RukuangHuang 6 months ago

#243 - Filter bank feature to prepare data for AE-HMM

Issue - State: closed - Opened by davidhaslacher 6 months ago - 2 comments

#242 - Combined network maps.

Pull Request - State: closed - Opened by RukuangHuang 6 months ago

#241 - Filling up shuffle buffer issue during model training

Issue - State: closed - Opened by LPNC-LANG 6 months ago - 4 comments

#240 - Refactored HMMs.

Pull Request - State: closed - Opened by cgohil8 6 months ago

#239 - Simplified DyNeMo

Pull Request - State: closed - Opened by cgohil8 6 months ago

#238 - Efficiency Improvements + Protect Data Temp Directory

Pull Request - State: closed - Opened by cgohil8 6 months ago

#237 - Option to specify random seed

Pull Request - State: closed - Opened by cgohil8 6 months ago

#236 - Enhancement related to TFRecords

Pull Request - State: closed - Opened by RukuangHuang 6 months ago - 1 comment
Labels: enhancement

#235 - Multiple embeddings

Pull Request - State: closed - Opened by RukuangHuang 6 months ago - 1 comment
Labels: enhancement

#234 - Problems encountered in the reproduction experiment

Issue - State: closed - Opened by JieLiang-ustc 7 months ago - 4 comments
Labels: enhancement

#233 - Bug with hive.model.set_dev_parameters_initializer when TF Dataset is passed

Issue - State: closed - Opened by RukuangHuang 7 months ago - 3 comments
Labels: bug, enhancement

#232 - TFRecords improvement

Pull Request - State: closed - Opened by RukuangHuang 7 months ago - 1 comment
Labels: enhancement

#231 - Improve random_state_time_course_initialisation

Issue - State: closed - Opened by cgohil8 7 months ago
Labels: enhancement

#230 - Save/load TFRecord Datasets

Issue - State: closed - Opened by cgohil8 7 months ago - 2 comments
Labels: enhancement

#229 - Feat: Allow extra session labels as extra channels in Data class.

Pull Request - State: closed - Opened by RukuangHuang 7 months ago
Labels: enhancement

#228 - Regression spectra (negative values)

Issue - State: closed - Opened by saltwater-tensor 7 months ago - 15 comments

#227 - Improvements for fMRI Data

Pull Request - State: closed - Opened by cgohil8 7 months ago
Labels: enhancement

#226 - Pull request from weiym97/osl-dynamics/main to OHBA-analysis/osl-dynamics/yiming

Pull Request - State: closed - Opened by weiym97 7 months ago - 1 comment

#225 - Saving and loading datasets

Issue - State: closed - Opened by saltwater-tensor 7 months ago - 8 comments

#224 - M-DyNeMo improvements

Pull Request - State: closed - Opened by RukuangHuang 7 months ago
Labels: enhancement

#222 - KL divergence going to NaN

Issue - State: closed - Opened by saltwater-tensor 8 months ago - 7 comments

#221 - Don't load memory maps by default

Issue - State: closed - Opened by cgohil8 8 months ago - 2 comments

#220 - Undefined variable

Issue - State: closed - Opened by evanr70 8 months ago - 6 comments

#219 - Bug when training DIVE on CPU

Issue - State: open - Opened by RukuangHuang 8 months ago - 1 comment
Labels: bug

#218 - Add SC-DyNeMo to models.

Pull Request - State: closed - Opened by evanr70 8 months ago - 4 comments
Labels: enhancement

#217 - Fix: Zero out NaN values in multitaper PSDs

Pull Request - State: closed - Opened by scho97 9 months ago - 1 comment
Labels: bug, enhancement

#216 - Spectrogram calculation error when a state doesn't activate (`analysis/spectral.py`)

Issue - State: closed - Opened by scho97 9 months ago - 3 comments
Labels: bug

#215 - Reparameterisation of covariance matrices

Pull Request - State: closed - Opened by evanr70 9 months ago - 5 comments
Labels: enhancement

#214 - static_aec_analysis.ipynb has an issue

Issue - State: closed - Opened by ScarletVV 9 months ago - 5 comments

#212 - Feat: new method to select channels in the Data object.

Pull Request - State: closed - Opened by cgohil8 9 months ago

#211 - HMM with Poisson Observation Model

Pull Request - State: closed - Opened by cgohil8 9 months ago

#210 - Refact: Refactored code for subject embedding models.

Pull Request - State: closed - Opened by RukuangHuang 10 months ago - 1 comment
Labels: enhancement

#209 - Adding channels picking function under class 'Data'

Issue - State: closed - Opened by BrianMozy 10 months ago - 4 comments
Labels: enhancement

#208 - Compatibility with newest TF version

Issue - State: closed - Opened by RukuangHuang 10 months ago - 2 comments

#207 - Latest TensorFlow Version

Pull Request - State: closed - Opened by cgohil8 10 months ago - 1 comment

#206 - Remove edge effects in inferred HMM state probabilities

Pull Request - State: closed - Opened by cgohil8 10 months ago

#205 - Data preparation.

Pull Request - State: closed - Opened by RukuangHuang 11 months ago - 2 comments
Labels: bug, enhancement

#204 - Bug in data preparation

Issue - State: closed - Opened by RukuangHuang 11 months ago - 11 comments
Labels: bug, enhancement

#203 - Bugs in thresholding and saving FC networks

Pull Request - State: closed - Opened by scho97 11 months ago - 1 comment
Labels: bug

#202 - Multiple GPU training and prepare for newer TF versions

Pull Request - State: closed - Opened by RukuangHuang 11 months ago - 1 comment
Labels: enhancement

#201 - Refactored dual estimation for HMM and wrapper to train SE-HMM.

Pull Request - State: closed - Opened by RukuangHuang 11 months ago

#200 - Major update to examples

Pull Request - State: closed - Opened by cgohil8 11 months ago

#199 - Implement Poisson observation model

Issue - State: closed - Opened by matsvanes 11 months ago - 1 comment
Labels: enhancement

#198 - Refact: Use analytic solution in HMM dual estimation.

Pull Request - State: closed - Opened by RukuangHuang 12 months ago

#197 - Enhance: Updated SE-HMM (and SE-DyNeMo)

Pull Request - State: closed - Opened by RukuangHuang 12 months ago - 1 comment
Labels: enhancement

#196 - Save training history by default

Issue - State: closed - Opened by cgohil8 12 months ago - 1 comment
Labels: enhancement

#195 - Benchmarked spectral estimation functions + split up connectivity plotting

Pull Request - State: closed - Opened by cgohil8 12 months ago
Labels: enhancement

#194 - Updated conda environments

Pull Request - State: closed - Opened by cgohil8 about 1 year ago

#193 - Bug: error in max-t permutation test

Pull Request - State: closed - Opened by scho97 about 1 year ago - 4 comments
Labels: bug

#192 - Log baum welch

Pull Request - State: closed - Opened by RukuangHuang about 1 year ago

#191 - Allow user to specify limits of power map colorbars

Pull Request - State: closed - Opened by cgohil8 about 1 year ago - 1 comment
Labels: enhancement

#190 - Allow user to specify asymmetric colorbar with vmin/vmax when plotting power maps

Issue - State: closed - Opened by cgohil8 about 1 year ago
Labels: enhancement

#189 - SE-HMM (Baum-welch using float64)

Pull Request - State: closed - Opened by RukuangHuang about 1 year ago - 1 comment

#188 - Refact: Baum-welch in log scale.

Pull Request - State: closed - Opened by RukuangHuang about 1 year ago
Labels: enhancement

#187 - Covariance values change when weights are loaded

Issue - State: open - Opened by scho97 about 1 year ago - 1 comment
Labels: bug

#186 - Memmap bug

Pull Request - State: closed - Opened by cgohil8 about 1 year ago

#185 - Bug during inference when using TFRecords and multiple gpus

Issue - State: closed - Opened by RukuangHuang about 1 year ago - 2 comments
Labels: bug

#184 - Passing pca_components and n_pca_components to Data methods

Issue - State: closed - Opened by cgohil8 about 1 year ago - 3 comments
Labels: enhancement