Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ODiogoSilva/TriFusion issues and pull requests

#301 - "OperationalError: attempt to write a readonly database" and others

Issue - State: open - Opened by MafaldaSFerreira over 4 years ago - 4 comments

#300 - TriFusion in MacOS Mojave

Issue - State: open - Opened by jmbraverman over 5 years ago - 1 comment

#299 - Running on Ubuntu 18.04

Issue - State: open - Opened by pbravakos over 5 years ago

#298 - Non contiguous partitions

Pull Request - State: closed - Opened by ODiogoSilva over 6 years ago - 1 comment
Labels: enhancement

#297 - Convert fasta alignment with headers containing whitespace

Issue - State: open - Opened by DocDer over 6 years ago - 1 comment

#296 - Update to 1.0.1

Pull Request - State: closed - Opened by ODiogoSilva over 6 years ago - 1 comment

#295 - Added fix to ortholog export issue

Pull Request - State: closed - Opened by ODiogoSilva over 6 years ago - 1 comment

#294 - add requirements.txt

Issue - State: closed - Opened by cimendes over 6 years ago

#293 - Excluding paralogs

Issue - State: closed - Opened by jmbraverman over 6 years ago - 3 comments

#292 - Replace usearch with diamond in protein search workflows

Pull Request - State: open - Opened by ODiogoSilva over 6 years ago - 1 comment
Labels: enhancement, GUI, backend

#291 - Add new orthology operation panel for "Alignment"

Issue - State: open - Opened by ODiogoSilva over 6 years ago
Labels: enhancement, GUI

#289 - Add workflow with converted nucleotide sequence alignment

Issue - State: open - Opened by ODiogoSilva over 6 years ago
Labels: enhancement, backend

#288 - Add workflow for orthology with protein alignments

Issue - State: open - Opened by ODiogoSilva over 6 years ago
Labels: enhancement, backend

#287 - Replace usearch dependency.

Issue - State: open - Opened by ODiogoSilva over 6 years ago
Labels: enhancement, backend

#286 - Add formatting option for upper case sequence data in TriSeq/TriFusion

Pull Request - State: closed - Opened by ODiogoSilva almost 7 years ago

#285 - Upper case output sequences

Issue - State: closed - Opened by MafaldaSFerreira almost 7 years ago - 1 comment
Labels: enhancement, process

#284 - missing -fi in TriSeq [command line version]

Issue - State: closed - Opened by MafaldaSFerreira almost 7 years ago - 5 comments
Labels: bug, documentation

#283 - 1.0.1

Pull Request - State: closed - Opened by ODiogoSilva almost 7 years ago - 1 comment

#282 - Add version option to CLI interfaces

Issue - State: closed - Opened by ODiogoSilva almost 7 years ago
Labels: enhancement

#281 - error in command line run

Issue - State: closed - Opened by dvorikus almost 7 years ago - 20 comments
Labels: bug

#279 - Manual trigger of summary statistics above a threshold of loaded taxa

Issue - State: closed - Opened by ODiogoSilva almost 7 years ago
Labels: enhancement, GUI

#278 - Add gene conservation plot

Issue - State: closed - Opened by ODiogoSilva almost 7 years ago
Labels: enhancement

#277 - Add character proportion by gene plot

Issue - State: closed - Opened by ODiogoSilva almost 7 years ago
Labels: enhancement

#276 - Limit taxa button in side panel

Issue - State: closed - Opened by ODiogoSilva almost 7 years ago
Labels: enhancement

#275 - "Wrong" string

Issue - State: open - Opened by StuntsPT over 7 years ago

#274 - Better exception handling for process execution.

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement, GUI

#272 - Long delay when importing partition scheme from file

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: GUI

#271 - Add check to TriSeq before overwrite output file with "-o" option

Issue - State: open - Opened by ODiogoSilva over 7 years ago
Labels: backend

#270 - Mozilla's Global Sprint (June 1st and 2nd 2017)

Issue - State: closed - Opened by ODiogoSilva over 7 years ago - 1 comment
Labels: community, mozsprint

#269 - Add a Codacy badge to README.md

Pull Request - State: closed - Opened by codacy-badger over 7 years ago - 1 comment

#268 - Better docstrings

Issue - State: open - Opened by ODiogoSilva over 7 years ago - 2 comments
Labels: enhancement

#267 - Automatic recognition of "?" as missing data

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement

#266 - Click and drag to select plot section

Issue - State: open - Opened by ODiogoSilva over 7 years ago
Labels: enhancement, GUI

#265 - Create mouseover tooltip framework

Issue - State: open - Opened by ODiogoSilva over 7 years ago
Labels: enhancement, GUI

#264 - Add invert selection in sidepanel tabs

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement, GUI

#263 - Nexus conversion header does not update ntaxa

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, backend

#262 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger over 7 years ago - 1 comment

#261 - Create smooth line plots for single gene plots

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement, GUI

#260 - Color legend does not distinguish nucleotides

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, GUI

#259 - Exception in Orthology explore pots

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, GUI

#258 - Add cooldown to sidepanel toggling

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement

#257 - Plot fast switching does not disable plot type float

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, GUI

#256 - OK in taxon/file group creation should emulate Cancel when no taxa/files are selected

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: enhancement

#255 - Orthology output directory button label disappears after loading data

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug

#254 - Sidepanel is wild when clicking view queue in Orthology

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug

#253 - Filter in groups filechooser

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, GUI

#252 - Whitespace in proteome file headers

Issue - State: closed - Opened by ODiogoSilva over 7 years ago
Labels: bug, GUI

#251 - Orthology search execution popup

Issue - State: closed - Opened by tiagofilipe12 almost 8 years ago - 2 comments
Labels: enhancement

#250 - Outlier test crashes with single alignment

Issue - State: closed - Opened by ODiogoSilva almost 8 years ago
Labels: bug

#249 - Handle exception when project files do not exist for proteomes

Issue - State: closed - Opened by ODiogoSilva almost 8 years ago
Labels: bug, GUI

#248 - Improve graphics' zoom

Issue - State: open - Opened by fernandoblalves almost 8 years ago
Labels: enhancement, GUI

#247 - Partitions update after missing data filter

Issue - State: closed - Opened by ODiogoSilva almost 8 years ago
Labels: bug, backend

#246 - special characters on project name

Issue - State: closed - Opened by ODiogoSilva almost 8 years ago
Labels: bug, GUI

#245 - Add search field for gene table view

Issue - State: closed - Opened by ODiogoSilva almost 8 years ago
Labels: enhancement, GUI

#244 - Issue with orthology filters after removing previous data sets

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: bug, GUI

#243 - Consider automated binary building

Issue - State: open - Opened by StuntsPT about 8 years ago - 1 comment

#242 - Add check and warning for MCL

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: GUI

#241 - Add warning when usearch not installed

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: GUI

#240 - Option to add suffix on output files when converting

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: enhancement, GUI

#239 - Add extension label for some filechoosers

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: enhancement, GUI

#238 - Revamp the reverse concatenate dialog

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: enhancement, GUI

#237 - Add offset for codon filter

Issue - State: closed - Opened by ODiogoSilva about 8 years ago - 1 comment
Labels: enhancement, GUI

#236 - Removing partitioned alignment does not remove old partitions

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: bug, backend

#235 - Add option to ignore missing data when collapsing

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: enhancement, GUI

#234 - Add option to select directory with ZORRO weight files

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: enhancement, GUI

#233 - Split partitions crashing

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: bug, GUI

#232 - File overwrite warning missing when exporting selected taxa

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: GUI

#231 - Open files with TriFusion path error

Issue - State: closed - Opened by ODiogoSilva about 8 years ago
Labels: bug, GUI

#230 - Avoid empty lines in nexus partition files

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, GUI

#229 - Add finer split partition range

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI

#227 - Provide MAF range for AFS plot

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI

#226 - Alternate Multiprocessing/Threading

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, backend

#225 - Setting taxa group from file crashes

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, GUI

#224 - Improve data set creation dialog

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, enhancement, GUI

#223 - Getting average distribution of sequence size crashes

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, Important

#222 - Include percentage values for summary stats

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI

#221 - Initial ortho option selected has a wrong scheme

Issue - State: closed - Opened by fernandoblalves over 8 years ago
Labels: bug, GUI

#220 - Increase memory efficiency of summary stats

Issue - State: closed - Opened by ODiogoSilva over 8 years ago - 1 comment
Labels: enhancement, GUI

#219 - Faster subprocess generation on Windows

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI, Windows

#218 - Convert DNA sequences into Protein sequences

Issue - State: open - Opened by ODiogoSilva over 8 years ago - 2 comments
Labels: enhancement

#217 - Exit popup

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, GUI

#216 - Add cancel option when performing output file checking

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI

#215 - Statistics and active dataset

Issue - State: closed - Opened by tiagofilipe12 over 8 years ago

#214 - Lock summary stats subprocess

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, Important

#213 - refreshing file chooser

Issue - State: closed - Opened by tiagofilipe12 over 8 years ago

#212 - refreshing summary statistic tables

Issue - State: closed - Opened by tiagofilipe12 over 8 years ago

#211 - Ship with a ".desktop" file

Issue - State: closed - Opened by StuntsPT over 8 years ago
Labels: enhancement, packaging

#210 - Complete in-app help

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: GUI

#209 - Drag and drop issue on windows

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: bug, GUI, Windows

#207 - Add full support for command line version of Statistics

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, backend

#206 - Add full support for command line version of Orthology explore

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, backend

#202 - Add full support to orthomcl pipeline

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, backend

#199 - Loading different sequence types

Issue - State: closed - Opened by tiagofilipe12 over 8 years ago - 1 comment
Labels: Hellpit

#180 - New Statistics plot types

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: enhancement, GUI

#159 - How to handle low available RAM situations

Issue - State: closed - Opened by ODiogoSilva over 8 years ago
Labels: needs analysis

#118 - Add full report for Orthology exploration

Issue - State: closed - Opened by ODiogoSilva about 9 years ago
Labels: enhancement, GUI