Ecosyste.ms: Issues

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GitHub / OATML-Markslab/ProteinNPT issues and pull requests

#18 - fine-tuning with more protein sequences

Issue - State: open - Opened by avilella about 2 months ago - 1 comment

#17 - Code for fitness conditional sampling

Issue - State: open - Opened by TheMatrixMaster 4 months ago

#16 - How to optimize the hyperparameter in proteinNPT training process

Issue - State: closed - Opened by Meron-TANG 4 months ago - 2 comments

#14 - num_MSA_sequences

Issue - State: closed - Opened by ZhummCrow 5 months ago - 2 comments

#12 - Error loading main sequence embeddings

Issue - State: closed - Opened by dc2211 6 months ago - 13 comments

#11 - Rebase errors

Issue - State: closed - Opened by loodvn 7 months ago

#10 - TMP: Checking diffs between master and rebased branch commits

Pull Request - State: closed - Opened by loodvn 7 months ago

#9 - Fast weights and pipeline cleanup

Pull Request - State: closed - Opened by loodvn 7 months ago - 1 comment

#8 - How to use trained model from pipeline.sh to do prediction

Issue - State: closed - Opened by Maxwell-downtown 7 months ago - 4 comments

#7 - pipeline.sh----['MSA_Transformer_ensemble'] not in index

Issue - State: closed - Opened by Maxwell-downtown 7 months ago - 7 comments

#6 - MSA processing error

Issue - State: closed - Opened by dc2211 7 months ago - 42 comments

#5 - The additional DMS assays added in the article has not been released

Issue - State: closed - Opened by Meron-TANG 8 months ago - 2 comments

#4 - How to perform a mutation scan?

Issue - State: closed - Opened by PKU-Leroy 9 months ago - 3 comments

#3 - unable to run embeddings_sub.sh

Issue - State: closed - Opened by adalisan 9 months ago - 3 comments

#2 - How can I reproduce the paper results?

Issue - State: closed - Opened by jxzly 10 months ago - 2 comments

#1 - How to use this code?

Issue - State: closed - Opened by linghuichen 10 months ago - 3 comments