Ecosyste.ms: Issues

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GitHub / NeurodataWithoutBorders/nwbinspector issues and pull requests

#337 - Fix experimenter BP link

Pull Request - State: closed - Opened by CodyCBakerPhD almost 2 years ago
Labels: topic: docs

#336 - [Documentation]: `check_experimenter` link not working

Issue - State: closed - Opened by bendichter almost 2 years ago - 1 comment
Labels: topic: docs

#333 - add version arg to cli

Pull Request - State: closed - Opened by bendichter almost 2 years ago
Labels: category: enhancement

#332 - [Feature]: --version

Issue - State: closed - Opened by yarikoptic almost 2 years ago - 3 comments
Labels: category: enhancement

#331 - do not upper bound numpy on python >= 3.8

Pull Request - State: closed - Opened by yarikoptic almost 2 years ago - 2 comments

#330 - Bump Numpy version

Pull Request - State: closed - Opened by CodyCBakerPhD almost 2 years ago - 5 comments
Labels: compatability: dependencies

#329 - [Bug]: kabooms on an elderly .nwb file

Issue - State: closed - Opened by yarikoptic almost 2 years ago - 5 comments
Labels: category: bug

#328 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#327 - [Repeal Best Practice]: TimeSeries Subtypes

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago - 1 comment
Labels: category: proposal

#326 - [Add Check]: IndexSeries used correctly

Issue - State: open - Opened by bendichter almost 2 years ago
Labels: category: new check

#325 - Add inspector check for negative timestamps

Pull Request - State: closed - Opened by weiglszonja almost 2 years ago - 3 comments
Labels: category: new check

#324 - [Add Check]: Datasets are not empty

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago
Labels: category: new check

#323 - [Add Check]: check for negative time

Issue - State: closed - Opened by bendichter almost 2 years ago - 2 comments
Labels: category: new check

#322 - add check that IndexSeries is not pointed at a TimeSeries

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 1 comment
Labels: category: new check

#321 - Added special skip condition for check_timestamps_match

Pull Request - State: closed - Opened by CodyCBakerPhD almost 2 years ago - 2 comments
Labels: category: proposal

#320 - comment explanation of optional import

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 1 comment

#319 - Add comment for Images import

Pull Request - State: closed - Opened by CodyCBakerPhD almost 2 years ago
Labels: category: enhancement, topic: docs

#318 - remove the optional module check for pynwb.base.images

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 1 comment

#317 - [Add Check]: IndexSeries should reference Images, not TimeSeries (which is deprecated)

Issue - State: closed - Opened by bendichter almost 2 years ago
Labels: category: new check

#316 - Dynamic table unique ids

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 4 comments
Labels: category: new check

#315 - fix get_data_shape for unbounded dataset

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 2 comments
Labels: category: bug

#314 - fix date parsing for years. Add test

Pull Request - State: closed - Opened by bendichter almost 2 years ago - 2 comments
Labels: category: bug

#313 - [Bug]: nwbinspector does not support a duration of years

Issue - State: closed - Opened by bendichter almost 2 years ago - 3 comments
Labels: category: bug

#312 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#311 - Include compression in ImageSeries size check

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 3 comments
Labels: category: enhancement

#310 - distinguish between videos

Pull Request - State: closed - Opened by bendichter about 2 years ago

#309 - Update using_the_library.rst

Pull Request - State: closed - Opened by bendichter about 2 years ago

#308 - Fix 307

Pull Request - State: closed - Opened by bendichter about 2 years ago
Labels: category: enhancement

#307 - checking for lazy type

Issue - State: closed - Opened by bendichter about 2 years ago - 1 comment

#306 - Add downstream DANDI CI

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 9 comments
Labels: topic: testing

#305 - Add test confirming expected config+threshold behavior

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: topic: testing

#304 - [Bug]: nwbinspector fails when there is an empty dataset

Issue - State: open - Opened by bendichter about 2 years ago - 2 comments
Labels: category: bug

#303 - [Bug fix]: hotfix configuration importance

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: category: bug

#302 - [Bug]: nwbinspector with dandi flag doesn't contain dandi validation errors

Issue - State: closed - Opened by djarecka about 2 years ago - 4 comments
Labels: category: bug, priority: critical

#301 - Add false positive skip for ImageSeries check on TwoPhotonSeries

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 2 comments
Labels: category: enhancement

#300 - Update outer exposure for new docs

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago

#299 - [Documentation]: Inspection on in-memory nwbfile

Pull Request - State: closed - Opened by bendichter about 2 years ago
Labels: topic: docs

#298 - [Documentation]: how to run inspection on an in-memory `NWBFile`?

Issue - State: closed - Opened by bendichter about 2 years ago - 2 comments
Labels: topic: docs

#297 - [Bug]: check_electrical_series_dims is incorrect

Issue - State: closed - Opened by bendichter about 2 years ago - 3 comments
Labels: category: bug

#296 - Debug lazy dataset class types and timestamps loading

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 3 comments
Labels: category: enhancement, priority: high

#295 - [Bug]: Skip AnnotatedEventsTable in check_single_row

Issue - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: category: bug

#294 - [Add Check]: Check that TimeSeries.control and TimeSeries.contro_description are consistent

Issue - State: open - Opened by oruebel about 2 years ago
Labels: category: new check

#293 - [Feature]: update from ros3 to fsspec

Issue - State: closed - Opened by bendichter about 2 years ago - 2 comments
Labels: category: enhancement

#292 - Updated actions to use node16

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago

#291 - Use isort in pre-commit

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: category: enhancement

#290 - Allow NCBI for subject species form

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 2 comments
Labels: category: enhancement

#285 - Best Practice for table values (not serialized or all-NaN)

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#280 - Push sphinx build warnings to nitpicky level

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#279 - Add direct parameter linkage for keyword arguments

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 3 comments
Labels: topic: docs

#278 - Add pydocstyle to pre-commit

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 3 comments
Labels: topic: docs

#277 - Add isort to pre-commit

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 2 comments
Labels: topic: docs

#276 - Adjust orange highlight for in-line code

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: topic: docs

#275 - Add BP for experimenter form

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: topic: docs

#271 - Clarify modules flag

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#270 - Add inspect_all for dandisets section (auto-path inference)

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#269 - Add CLI streaming section

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#268 - Add conda-forge installation note

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 years ago
Labels: topic: docs

#265 - [Do not merge until next PyNWB release]: Cached namespace validation

Pull Request - State: open - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: category: enhancement

#263 - [Bug]: Philosophy for interactions with PyNWB versions

Issue - State: closed - Opened by CodyCBakerPhD about 2 years ago - 1 comment
Labels: category: bug

#255 - Include check_subject_proper_age_range to DANDI config

Pull Request - State: closed - Opened by CodyCBakerPhD over 2 years ago

#254 - Improve experimenter message

Pull Request - State: closed - Opened by CodyCBakerPhD over 2 years ago
Labels: topic: docs

#252 - propose changes to best practices

Pull Request - State: closed - Opened by bendichter over 2 years ago

#250 - [WIP] add age.reference support

Pull Request - State: open - Opened by CodyCBakerPhD over 2 years ago
Labels: category: new check

#243 - [Feature] Add debug flag for including ERROR level traceback

Issue - State: closed - Opened by CodyCBakerPhD over 2 years ago - 2 comments

#235 - [Add Check]: imageseries arg check

Issue - State: open - Opened by bendichter over 2 years ago - 1 comment
Labels: category: new check

#220 - [Add Check]: add check for if electrodes table x, y, z are NaNs

Issue - State: open - Opened by bendichter over 2 years ago - 2 comments
Labels: category: new check

#209 - [Add Check]: age Duration range and Best Practice

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago - 5 comments
Labels: category: new check, priority: medium

#208 - [Add Check]: units are in SI values

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago - 5 comments
Labels: category: new check, priority: medium

#191 - [Feature]: inspect_all on staging

Issue - State: open - Opened by bendichter over 2 years ago - 1 comment
Labels: category: enhancement, priority: medium, topic: docs

#190 - [Documentation]: demonstrate inspect_all for dandiset

Issue - State: closed - Opened by bendichter over 2 years ago
Labels: topic: docs

#189 - [Documentation]: document streaming CLI usage in docs

Issue - State: closed - Opened by bendichter over 2 years ago
Labels: topic: docs

#183 - [Feature]: aggregate over location and pool messages

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago
Labels: category: enhancement, priority: high

#172 - [Add Check]: check timestamps are equal

Issue - State: open - Opened by bendichter over 2 years ago - 1 comment
Labels: category: new check, priority: low

#155 - [Add Check]: entire col/row of table is not NaN, and entire axis of TimeSeries.data is not NaN

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago
Labels: category: new check, priority: low

#153 - [Feature]: specifiable output format

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago - 2 comments
Labels: category: enhancement, priority: low

#117 - [Feature]: per dataset configuration file to skip/ignore false positives

Issue - State: open - Opened by yarikoptic over 2 years ago - 1 comment
Labels: category: enhancement

#111 - [Feature]: an auto-fixer for missing metadata

Issue - State: open - Opened by CodyCBakerPhD over 2 years ago - 1 comment
Labels: category: enhancement, priority: low, category: proposal