Ecosyste.ms: Issues

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GitHub / NeurodataWithoutBorders/nwbinspector issues and pull requests

#438 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago

#437 - Add test case for DANDI config with parallel

Pull Request - State: closed - Opened by CodyCBakerPhD 9 months ago - 1 comment

#436 - [Bug]: Cannot use parallel for checks

Issue - State: open - Opened by tuanpham96 9 months ago - 11 comments
Labels: category: bug, priority: medium

#435 - Separate workflows for testing dandi dev between live and no network

Pull Request - State: closed - Opened by CodyCBakerPhD 9 months ago - 1 comment

#434 - Remove tox from dandi dev tests

Pull Request - State: closed - Opened by CodyCBakerPhD 10 months ago - 1 comment

#433 - BF: do or to "" to ensure that we do not end up treating None as str

Pull Request - State: closed - Opened by yarikoptic 10 months ago - 3 comments

#432 - [Add Check]: Check for unofficial versions of schema

Issue - State: open - Opened by CodyCBakerPhD 10 months ago
Labels: category: new check, priority: medium

#431 - Add in vitro support

Pull Request - State: closed - Opened by CodyCBakerPhD 10 months ago - 10 comments
Labels: category: enhancement, priority: high

#430 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago

#429 - Bump readthedocs-sphinx-search from 0.1.0rc3 to 0.3.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: compatability: dependencies, python

#428 - Bump tj-actions/changed-files from 32.1.2 to 41.0.0 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: compatability: dependencies, github_actions

#427 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#426 - [Feature]: Check timestamp regularity at microsecond scale

Issue - State: open - Opened by CodyCBakerPhD 11 months ago
Labels: category: enhancement

#425 - Use paths instead of io in pynwb.validate call

Pull Request - State: closed - Opened by rly 11 months ago - 1 comment

#424 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#423 - [Add Check]: Negative rates of TimeSeries

Issue - State: open - Opened by CodyCBakerPhD 11 months ago
Labels: category: new check

#422 - [Bug]: `OSError: Unable to synchronously open file (bad object header version number)`

Issue - State: closed - Opened by TheChymera 12 months ago - 1 comment
Labels: category: bug

#421 - [Bug]: Tests create a TimeSeries with a zero rate which is no longer allowed

Issue - State: closed - Opened by rly 12 months ago - 3 comments
Labels: category: bug

#420 - add missing api docs

Pull Request - State: open - Opened by bendichter 12 months ago

#419 - [Add Check]: Comma-separated entries in releated_publication should be list of entries

Issue - State: open - Opened by CodyCBakerPhD 12 months ago
Labels: category: new check

#418 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#417 - [Feature]: Put config name/filepath in report summary

Issue - State: open - Opened by rly about 1 year ago
Labels: category: enhancement, priority: medium

#416 - Fully type-annotate package

Issue - State: closed - Opened by jwodder about 1 year ago

#415 - [Bug]: inspect_all throws a pickle error

Issue - State: closed - Opened by garrettmflynn about 1 year ago - 5 comments
Labels: category: bug

#414 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#413 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#412 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#411 - Clarify 'or' requirement in message for subject age + DOB

Pull Request - State: closed - Opened by CodyCBakerPhD about 1 year ago - 6 comments

#410 - [Bug]: Inspect using DANDI settings

Issue - State: closed - Opened by mavaylon1 about 1 year ago - 2 comments
Labels: category: bug

#409 - [Bug]: Experimenter form edge case

Issue - State: open - Opened by CodyCBakerPhD about 1 year ago
Labels: category: bug, priority: low

#408 - [New Check]: Add check electricalseries of dtype int16

Pull Request - State: open - Opened by alessandratrapani about 1 year ago - 1 comment
Labels: category: new check

#406 - add changelog reminder

Pull Request - State: closed - Opened by CodyCBakerPhD about 1 year ago

#405 - [New Check]: Spike times are increasing

Pull Request - State: open - Opened by alessandratrapani about 1 year ago - 3 comments
Labels: category: new check

#404 - [New Check]: TimeSeries rate is zero

Pull Request - State: closed - Opened by alessandratrapani about 1 year ago - 3 comments
Labels: category: new check

#403 - [New Check]: TimeSeries with empty dataset

Pull Request - State: open - Opened by alessandratrapani about 1 year ago - 2 comments
Labels: category: new check

#402 - [Bug]: Cannot Detect Files in Nested Symlinked Folders

Issue - State: open - Opened by garrettmflynn about 1 year ago
Labels: category: bug, priority: medium

#401 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#400 - Fix empty string for optional attributes that aren't strings

Pull Request - State: closed - Opened by CodyCBakerPhD about 1 year ago

#399 - [Add Check]: Units table: obs_intervals should not be overlapping for a given unit

Issue - State: open - Opened by bendichter about 1 year ago
Labels: category: new check, priority: low

#398 - [Bug]: ImageSeries with external_file causes a nwbinspector error

Issue - State: closed - Opened by lawrence-mbf about 1 year ago - 4 comments
Labels: category: bug

#397 - Fixed JSON encoding of importance used as keys

Pull Request - State: open - Opened by CodyCBakerPhD about 1 year ago - 1 comment

#396 - [Bug]: InspectorOutputJSONEncoder Does Not Serialize get_report_header() Output

Issue - State: open - Opened by garrettmflynn over 1 year ago
Labels: category: bug

#395 - [Add Check]: ElectricalSeries of dtype int16 with conversion=1.0 and offset=0.0 is potentially wrong?

Issue - State: open - Opened by CodyCBakerPhD over 1 year ago - 4 comments
Labels: category: new check, priority: low

#394 - [Add Check]: Check if spike times are increasing

Issue - State: open - Opened by CodyCBakerPhD over 1 year ago - 4 comments
Labels: category: new check

#393 - Should check_subject_exists be CRITICAL? (i.e., should it block DANDI upload)

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 2 comments

#392 - Update user guide

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago

#391 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#390 - trying to fix error in test file updates

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#389 - [Add Check]: rate of TimeSeries is not zero

Issue - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment
Labels: category: new check, help wanted: good first issue

#388 - [Read Helpers IIb] Add read_nwbfile with Pytest fixtures

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 4 comments

#387 - [Read Helpers I] Reorganize tools sub-module

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#386 - [Read Helpers IIa] Add read_nwbfile with TestCase tests

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#385 - [Feature]: Found 0 issues over 0 files

Issue - State: open - Opened by bendichter over 1 year ago
Labels: category: enhancement

#384 - fix license badge

Pull Request - State: closed - Opened by bendichter over 1 year ago - 1 comment

#383 - add classifiers to setup.py

Pull Request - State: closed - Opened by bendichter over 1 year ago

#382 - Fix #375

Pull Request - State: closed - Opened by h-mayorquin over 1 year ago - 4 comments

#381 - Update using_the_command_line_interface.rst

Pull Request - State: closed - Opened by bendichter over 1 year ago

#380 - drop support for 3.7 and add support for 3.11

Pull Request - State: closed - Opened by bendichter over 1 year ago

#379 - move from ros3 to fsspec

Pull Request - State: closed - Opened by bendichter over 1 year ago - 8 comments

#378 - demonstrate how to inspect a Zarr NWB file

Pull Request - State: closed - Opened by bendichter over 1 year ago

#377 - [Bug]: nwbinspector flags BEST_PRACTICE_VIOLATION when using ndx-photometry extension

Issue - State: open - Opened by pauladkisson over 1 year ago - 3 comments
Labels: category: bug

#376 - [Feature]: Support HDMF Zarr backend

Issue - State: closed - Opened by bendichter over 1 year ago - 5 comments
Labels: category: enhancement

#375 - Shoud check for ascending series should apply to stop_times of the interval?

Issue - State: closed - Opened by h-mayorquin over 1 year ago - 5 comments

#372 - add title back

Pull Request - State: closed - Opened by bendichter over 1 year ago

#371 - Rmv title

Pull Request - State: closed - Opened by bendichter over 1 year ago

#370 - [Add Check]: Subject weight should have form "[numeric] [string]"

Issue - State: open - Opened by rly over 1 year ago - 2 comments
Labels: category: new check

#369 - Update pre-commit to run on .py files in docs

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago

#368 - Try to remove pre-commit inclusion rule

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#367 - add email notification of daily failures

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#366 - move streaming tests

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#365 - [Bug]: HDMF 3.5.5 breaks streaming tests

Issue - State: closed - Opened by CodyCBakerPhD over 1 year ago - 2 comments
Labels: category: bug

#364 - break up workflow for nwbfile object

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 7 comments

#363 - inspect_nwb() accepts nwb file object

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 3 comments

#362 - add docs page for checks by importance

Pull Request - State: closed - Opened by bendichter over 1 year ago - 1 comment

#361 - [Documentation]: show checks by importance

Issue - State: closed - Opened by bendichter over 1 year ago - 2 comments
Labels: topic: docs

#360 - [Documentation]: add a reference to dandi config option in user guide

Issue - State: open - Opened by satra over 1 year ago
Labels: topic: docs

#359 - [Bug]: File count in output includes directories

Issue - State: open - Opened by rly over 1 year ago - 1 comment
Labels: category: bug, priority: low

#358 - [Bug]: config check name reference

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 2 comments

#357 - [Feature]: Describe check functions with a general schema language

Issue - State: open - Opened by garrettmflynn over 1 year ago - 3 comments
Labels: category: enhancement

#356 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#355 - improve crosslinking

Pull Request - State: closed - Opened by bendichter over 1 year ago - 1 comment

#354 - [Documentation]: Add docs page showing what is required by DANDI

Issue - State: closed - Opened by rly over 1 year ago - 2 comments
Labels: topic: docs

#353 - C elegens metadata

Pull Request - State: closed - Opened by bendichter over 1 year ago - 8 comments

#352 - improve docstrings

Pull Request - State: closed - Opened by bendichter over 1 year ago - 4 comments

#351 - Update bug_report.yml

Pull Request - State: closed - Opened by bendichter over 1 year ago

#350 - Simplify bug report form

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 1 comment

#349 - skip predefined columns

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago - 2 comments

#348 - Update external links

Pull Request - State: closed - Opened by CodyCBakerPhD over 1 year ago

#347 - [Bug]: check_column_binary_capability ignores limitations set by schema

Issue - State: closed - Opened by janhohenheim over 1 year ago - 3 comments
Labels: category: bug

#346 - Update nwbfile_metadata.rst

Pull Request - State: closed - Opened by bendichter over 1 year ago

#345 - [Feature]: Expand Best practice violations?

Issue - State: closed - Opened by TheChymera over 1 year ago - 5 comments
Labels: category: enhancement

#344 - [Feature]: Report location for custom columns on units and electrode table

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago - 1 comment
Labels: category: enhancement, priority: low

#343 - [Bug]: Should 'is_ascending_series' skip NaNs?

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago - 4 comments
Labels: category: bug

#342 - [Bug]: Clarify form of CompassDirection units

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago
Labels: category: bug

#341 - [Bug]: Correctly skip Images checks for PyNWB<2.1.0

Pull Request - State: closed - Opened by CodyCBakerPhD almost 2 years ago - 3 comments
Labels: category: bug

#340 - [Documentation]: Clarify convention of brain region ontologies

Issue - State: open - Opened by CodyCBakerPhD almost 2 years ago - 1 comment
Labels: topic: docs

#339 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#338 - add extension best practices

Pull Request - State: open - Opened by bendichter almost 2 years ago - 1 comment