NeurodataWithoutBorders/nwbinspector issues and pull requests

#538 - update publishing workflow for pyproject.toml

Pull Request - State: closed - Opened by stephprince 3 days ago - 1 comment

#537 - update CHANGELOG for release 0.6.0

Pull Request - State: closed - Opened by stephprince 3 days ago

#536 - Remove numpy and h5py restrictions

Pull Request - State: open - Opened by rly 3 days ago - 1 comment

#535 - fix issue where check fails when description is a list in FeatureExtraction

Pull Request - State: open - Opened by bendichter 3 days ago - 1 comment

#534 - [Bug]: NWB Inspector fails when NWB type description is a non-scalar.

Issue - State: open - Opened by ehennestad 3 days ago
Labels: category: bug

#533 - Error exporting report to JSON when using the CLI interface

Issue - State: open - Opened by ehennestad 10 days ago - 3 comments
Labels: category: bug

#532 - Raise best practice violation if ":" in container name

Pull Request - State: open - Opened by rly 15 days ago - 1 comment

#531 - Use cached namespaces during validation

Pull Request - State: closed - Opened by stephprince about 1 month ago - 3 comments

#530 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#529 - Update daily workflow notifications

Pull Request - State: closed - Opened by stephprince about 1 month ago - 2 comments

#528 - [Bug]: PyNWB validator not using cached schema

Issue - State: closed - Opened by rly about 2 months ago
Labels: category: bug, priority: high

#527 - Add workflows to test without dandi reqs

Pull Request - State: closed - Opened by rly about 2 months ago - 1 comment

#526 - [Feature]: New release?

Issue - State: open - Opened by rly about 2 months ago - 2 comments
Labels: category: enhancement, priority: high

#525 - Adjust github actions to use setup-miniconda

Pull Request - State: closed - Opened by rly about 2 months ago - 2 comments

#524 - Fix incorrect error message for opto stimulus site

Pull Request - State: closed - Opened by rly about 2 months ago - 2 comments

#523 - Change import of Callable for typing

Pull Request - State: closed - Opened by rly about 2 months ago - 3 comments

#522 - [Bug]: No module named 'typing_extensions'

Issue - State: closed - Opened by rly about 2 months ago - 2 comments
Labels: category: bug

#521 - [Bug]: ShapeError is not iterable

Issue - State: closed - Opened by rly about 2 months ago - 1 comment
Labels: category: bug

#520 - Update all annotations and check with Mypy

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 months ago - 2 comments

#519 - [Feature]: Add LRU caching for Zarr arrays

Issue - State: open - Opened by stephprince about 2 months ago
Labels: category: enhancement, priority: medium

#518 - [Feature]: support streaming NWB Zarr files from DANDI

Issue - State: open - Opened by stephprince about 2 months ago - 2 comments
Labels: category: enhancement, priority: medium

#517 - [Feature]: clarify location in InspectorMessage

Issue - State: open - Opened by stephprince about 2 months ago
Labels: category: enhancement, priority: low

#516 - Automatic removal of unused f-strings

Pull Request - State: closed - Opened by CodyCBakerPhD about 2 months ago - 3 comments

#515 - Move RTD files

Pull Request - State: closed - Opened by CodyCBakerPhD 2 months ago - 3 comments

#514 - nwbinspector not included in NWB Development Board

Issue - State: open - Opened by stephprince 2 months ago
Labels: category: enhancement, priority: low

#513 - Integrate and test Zarr backend

Pull Request - State: closed - Opened by CodyCBakerPhD 2 months ago - 2 comments

#512 - Remove dashboard CI

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 2 comments

#511 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago

#510 - Support only latest PyNWB

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 2 comments

#509 - Simplify testing suite

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 4 comments

#508 - Remove 3.8; updating annotation typing

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 1 comment

#507 - Swap to pyproject.toml setup

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 3 comments

#506 - Remove robust_ros3_retry

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 1 comment

#505 - Final deprecation of `insect_nwb`

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 2 comments

#504 - Update DANDI dev tests

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 4 comments

#503 - [Documentation]: add workflow to test that code in documentation runs

Issue - State: open - Opened by stephprince 3 months ago - 1 comment
Labels: topic: docs

#502 - [Documentation]: Add remaining best practice summaries for checks

Issue - State: open - Opened by CodyCBakerPhD 3 months ago - 1 comment
Labels: priority: low, topic: docs

#501 - Fix API docs

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 3 comments

#500 - [Documentation]: Auto-generated API is broken

Issue - State: closed - Opened by bendichter 3 months ago - 1 comment
Labels: topic: docs

#499 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago

#498 - clean up imports a bit

Pull Request - State: closed - Opened by bendichter 3 months ago - 1 comment

#497 - More ruff (isort)

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 1 comment

#496 - Setup initial ruff

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 1 comment

#495 - Add cli with config tests

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 2 comments

#494 - Fix import

Pull Request - State: closed - Opened by bendichter 3 months ago - 3 comments

#493 - [Bug]: CLI with config not working

Issue - State: closed - Opened by bendichter 3 months ago
Labels: category: bug

#492 - Explicit notification

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago

#491 - Simplify DANDI Inspector

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago

#490 - Add DANDI Inspector API; replace ros3 with remfile

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 5 comments

#489 - [Documentation]: update internal references in docs

Issue - State: closed - Opened by stephprince 3 months ago
Labels: topic: docs

#488 - import JSON encoder from formatting

Pull Request - State: closed - Opened by stephprince 3 months ago - 2 comments

#487 - Final scoping fix

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 1 comment

#486 - Implement scope control over check submodule

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 3 comments

#485 - Improve organization

Pull Request - State: closed - Opened by CodyCBakerPhD 3 months ago - 3 comments

#484 - Fix sphinx-link in docs

Pull Request - State: closed - Opened by zm711 4 months ago - 1 comment

#483 - Creating dataset with R leads to nwbinspector errors "incorrect type for 'subject_id' (got 'bytes', expected 'str')")"

Issue - State: closed - Opened by nrsc 4 months ago - 7 comments

#482 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#481 - [Feature]: Detect when an NWB file has no domain-specific neurodata types

Issue - State: open - Opened by bendichter 4 months ago - 1 comment
Labels: category: enhancement, priority: low

#480 - [New Check]: Check timestamps ascending with nans

Pull Request - State: closed - Opened by alessandratrapani 4 months ago - 2 comments

#479 - [Documentation]: clarification to streaming with CLI with exact s3 path

Issue - State: closed - Opened by stephprince 4 months ago - 1 comment
Labels: topic: docs

#478 - [Feature]: Refactors and improvements

Issue - State: closed - Opened by CodyCBakerPhD 4 months ago - 1 comment
Labels: category: enhancement

#477 - [Docs]: Checks by importance not ordered appropriately

Issue - State: open - Opened by CodyCBakerPhD 4 months ago
Labels: category: bug

#476 - [Bug]: check_timestamps_ascending is triggered when timestamps have NaNs

Issue - State: closed - Opened by bendichter 5 months ago
Labels: category: bug

#475 - Update testing.yml to install h5py with ROS3 first

Pull Request - State: closed - Opened by rly 5 months ago

#474 - Bump numpy and adjust workflows

Pull Request - State: closed - Opened by CodyCBakerPhD 5 months ago - 2 comments

#473 - Documentation typo

Pull Request - State: closed - Opened by ElpyDE 5 months ago - 1 comment

#472 - [Documentation]: Add best practice for patient session start time

Issue - State: open - Opened by bendichter 5 months ago
Labels: topic: docs

#471 - [Bug] Timezone awareness for session start time checks

Pull Request - State: closed - Opened by CodyCBakerPhD 6 months ago - 2 comments

#470 - skip mac sidecars

Pull Request - State: closed - Opened by pauladkisson 6 months ago - 4 comments

#469 - [Bug]: nwbinspector fails on folders located on external ssd for mac due to ._ sidecar files

Issue - State: closed - Opened by pauladkisson 6 months ago - 1 comment
Labels: category: bug

#468 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago

#467 - Fix suggested rate for timeseries with regular timestamps

Pull Request - State: closed - Opened by stephprince 6 months ago - 1 comment

#466 - [Bug]: prompted rate for regular timestamps check not in Hz

Issue - State: closed - Opened by stephprince 6 months ago - 2 comments
Labels: category: bug

#465 - Update large ImageSeries external file check

Issue - State: open - Opened by CodyCBakerPhD 6 months ago
Labels: category: enhancement, priority: medium

#464 - add details for SpatialSeries

Pull Request - State: closed - Opened by bendichter 6 months ago

#463 - fix links for checks

Pull Request - State: closed - Opened by bendichter 6 months ago

#462 - this check is missing

Pull Request - State: closed - Opened by bendichter 6 months ago - 2 comments

#461 - Fix best practices typos

Pull Request - State: closed - Opened by alejoe91 6 months ago

#460 - Pin Zarr for tests

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 3 comments

#459 - Fix dandi release action

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 5 comments

#458 - add check for missing timezone.

Pull Request - State: open - Opened by bendichter 7 months ago - 10 comments

#457 - Provide strtobool to avoid use of deprecated (removed in 3.12) distutils

Pull Request - State: closed - Opened by yarikoptic 7 months ago - 2 comments

#456 - [Discussion]: When does it make sense to not use NWB?

Issue - State: open - Opened by bendichter 7 months ago
Labels: category: enhancement, priority: low

#455 - Try jinja fix

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 3 comments

#454 - Pass secret in dailies

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago

#453 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#452 - Fix timezone checks

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 2 comments

#451 - [Bug]: `check_session_start_time_future_date` error with latest pynwb

Issue - State: closed - Opened by rly 7 months ago
Labels: category: bug

#450 - Pin mac runners to x64

Pull Request - State: closed - Opened by CodyCBakerPhD 7 months ago - 3 comments

#449 - Update copyright year so doesn't look stale

Pull Request - State: closed - Opened by yarikoptic 7 months ago - 8 comments

#448 - Add codespell support (config, workflow to detect/not fix) and make it fix few typos

Pull Request - State: closed - Opened by yarikoptic 7 months ago - 1 comment

#447 - Method to import checks from any known extensions

Pull Request - State: open - Opened by CodyCBakerPhD 7 months ago - 3 comments

#446 - fixed module search flag in nwbinspector

Pull Request - State: closed - Opened by dysprague 7 months ago - 2 comments

#445 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#444 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#443 - Expose similar options to downstream run_checks

Pull Request - State: closed - Opened by CodyCBakerPhD 8 months ago - 2 comments

#442 - Add documentation about duplicated metadata in `Electrodes`

Pull Request - State: closed - Opened by h-mayorquin 8 months ago

#441 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#440 - Generic outer level progress bar control

Pull Request - State: closed - Opened by CodyCBakerPhD 8 months ago - 5 comments

#439 - Improve species message

Pull Request - State: closed - Opened by CodyCBakerPhD 9 months ago

GitHub / NeurodataWithoutBorders/nwbinspector issues and pull requests