Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / NeuroML/pyNeuroML issues and pull requests
#228 - To v1.0.2 & fix for pypi
Pull Request -
State: closed - Opened by pgleeson over 1 year ago
#227 - Update to v1.0.1 with jnml jar v0.12.2
Pull Request -
State: closed - Opened by pgleeson over 1 year ago
#226 - chore: regenerate man pages
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
#225 - reloading data uses quantity path string instead of column id
Issue -
State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: bug, T: enhancement, S: ready for review, S: needs info, good first issue
#224 - Print `python -version`, neuron path etc. info in `pyneuroml -version`
Issue -
State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement, Help wanted, good first issue
#223 - Fix for reloading saved spike data
Pull Request -
State: closed - Opened by pgleeson over 1 year ago
#222 - Plotting fixes related to #220, and regenerates man pages
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement, S: ready for review
#221 - A few minor changes and bugfix for 2d plotting
Pull Request -
State: closed - Opened by pgleeson over 1 year ago
#220 - Suggested updates to 2D plots etc
Issue -
State: closed - Opened by pgleeson over 1 year ago
- 1 comment
Labels: T: enhancement
#219 - Feat/more morphplots -> exp
Pull Request -
State: closed - Opened by pgleeson over 1 year ago
#218 - feat: add method to rotate cell
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
- 1 comment
Labels: T: enhancement
#217 - test(modchananalysis): test to check that nrnivmodl is run when required
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
- 3 comments
Labels: S: ready for review
#216 - pynml-modchananalysis excepting on division by zero
Pull Request -
State: closed - Opened by borismarin over 1 year ago
- 3 comments
Labels: T: bug, S: ready for review
#215 - Adding logic for one-shot validation of multiple input files
Pull Request -
State: closed - Opened by borismarin over 1 year ago
#214 - As a user, I would like to add headers to the output files I generate so I can easily see what was recorded in each item at a later date
Issue -
State: closed - Opened by sanjayankur31 over 1 year ago
- 3 comments
Labels: T: enhancement, Help wanted
#213 - Feat/more morphplots
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
- 1 comment
Labels: T: enhancement, S: ready for review
#212 - feat: improve installation of extra deps
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
#211 - ci(py311): add py311 to ci and setup.py
Pull Request -
State: closed - Opened by sanjayankur31 over 1 year ago
#210 - As a user, I want to be able to run my simulations using different backends without modifying my Python NeuroML simulation code
Issue -
State: open - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement
#209 - To v0.7.5 and jnml 0.12.1
Pull Request -
State: closed - Opened by pgleeson almost 2 years ago
#208 - Feature: add functions to create a combine archive from a provided "root" file
Pull Request -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 1 comment
Labels: T: enhancement, S: ready for review
#207 - Implement archiving to combine archive format
Issue -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 2 comments
Labels: T: enhancement
#206 - Feat/document channelanalysis
Pull Request -
State: closed - Opened by sanjayankur31 almost 2 years ago
#205 - Adding latest jnml jar
Pull Request -
State: closed - Opened by pgleeson almost 2 years ago
#204 - mview_neuroml2.hoc docs not create default soma, dendrite, axonal groups
Issue -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 2 comments
Labels: T: bug, T: enhancement, T: question, S: needs info
#203 - Improved error code generation; To v0.7.3
Pull Request -
State: closed - Opened by pgleeson almost 2 years ago
#202 - [Bug] pynml-modchananalysis: `ZeroDivisionError: float division by zero`
Issue -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 5 comments
Labels: T: bug
#201 - pynml-modchananalysis: allow saving of plots without user intervention (for batch processing)
Issue -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 2 comments
Labels: T: enhancement, good first issue
#200 - Document cell analysis function, add test
Pull Request -
State: closed - Opened by sanjayankur31 almost 2 years ago
Labels: T: enhancement
#199 - Update LEMSSimulation to also take string parameters
Issue -
State: closed - Opened by sanjayankur31 almost 2 years ago
Labels: T: enhancement
#198 - [Bug] Cannot create spike output file for class cell2CaPools
Issue -
State: closed - Opened by harshagurnani almost 2 years ago
- 8 comments
Labels: T: bug, S: release pending
#197 - Plotting inactivation/activation
Issue -
State: closed - Opened by christian-oreilly almost 2 years ago
- 4 comments
#196 - [Bug] Output export to Neuron are specific on ions, not channels
Issue -
State: closed - Opened by christian-oreilly almost 2 years ago
- 9 comments
Labels: T: bug
#195 - Mainly new jar for jnml
Pull Request -
State: closed - Opened by pgleeson almost 2 years ago
- 2 comments
#194 - Development to exp
Pull Request -
State: closed - Opened by pgleeson almost 2 years ago
#193 - Move mod2nml script to neuron utilities
Pull Request -
State: closed - Opened by sanjayankur31 almost 2 years ago
- 4 comments
Labels: T: enhancement
#192 - Plotting: add wire diagram generator for morphologies
Issue -
State: open - Opened by sanjayankur31 about 2 years ago
Labels: T: enhancement, Help wanted, P: low, good first issue
#191 - Feat/cell builder updates: migrated to libNeuroML!
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
#190 - CellBuilder: add function to add unbranched list of segments to a cell
Issue -
State: closed - Opened by sanjayankur31 about 2 years ago
- 1 comment
Labels: T: enhancement
#189 - feat: migrate factory functions to libNeuroML
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
#188 - feat(utils): validate component on creation by factory
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
#187 - Fix/libneuroml 139
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
- 1 comment
Labels: T: enhancement, S: ready for review
#186 - Use development branch of libNML in requirements-dev
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
- 3 comments
#185 - Feat/channelml2nml2
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
Labels: T: enhancement, S: ready for review, P: low
#184 - Feat/add neuron cell info utils
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
- 10 comments
Labels: T: enhancement, S: ready for review
#183 - Feat/surface plots
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
#182 - For 2d plots
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
- 4 comments
#181 - Feat/use webgl interactive plot
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
#180 - Plotly features to dev
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
#179 - Latest experimental branch incl chan analysis updates
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
#178 - Add morphology plotter util
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
- 4 comments
Labels: T: enhancement, S: ready for review
#177 - Update channel export
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
- 1 comment
#176 - Feat/plotly plotting
Pull Request -
State: closed - Opened by sanjayankur31 about 2 years ago
- 1 comment
Labels: T: enhancement, S: ready for review
#175 - Test netpyne json
Pull Request -
State: closed - Opened by pgleeson about 2 years ago
#174 - update changes to the template file
Pull Request -
State: closed - Opened by shayan823 over 2 years ago
- 5 comments
#173 - Update ChannelInfo_TEMPLATE.md
Pull Request -
State: closed - Opened by shayan823 over 2 years ago
- 4 comments
#172 - To v0.7.0
Pull Request -
State: closed - Opened by pgleeson over 2 years ago
- 1 comment
#171 - Fixes display of realtime output
Pull Request -
State: closed - Opened by pgleeson over 2 years ago
#170 - Add CellBuilder.py to pyNeuroML
Issue -
State: closed - Opened by pgleeson over 2 years ago
- 1 comment
#169 - More EDEN functions
Pull Request -
State: closed - Opened by pgleeson over 2 years ago
#168 - To v0.7.0 using jnml jar v0.12.0 & initial EDEN support
Pull Request -
State: closed - Opened by pgleeson over 2 years ago
#167 - Add Eden support
Issue -
State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement
#166 - pynml -validate *nml doesn't validate all *nml files at once
Issue -
State: closed - Opened by pgleeson over 2 years ago
- 2 comments
Labels: T: enhancement, Help wanted, good first issue
#165 - Add a check in pynml-modchananalysis to see whether mod files are compiled yet
Issue -
State: closed - Opened by pgleeson over 2 years ago
Labels: T: enhancement, Help wanted, good first issue
#164 - Document neuron export functions
Pull Request -
State: closed - Opened by sanjayankur31 over 2 years ago
- 3 comments
Labels: S: ready for review, C: docs, P: low
#163 - [Bug] NetPyNe 1.0.1 doesn't work with pyNeuroML
Issue -
State: closed - Opened by jonrkarr over 2 years ago
- 2 comments
#162 - BREAKING CHANGE: drop py2 support
Pull Request -
State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement, S: ready for review
#161 - pyNeuroML 0.5.19 breaks simulation with Brian2
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 2 comments
#160 - Add swc export to pynml
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 1 comment
Labels: T: enhancement, S: ready for review
#159 - Feat/document 2stage opt
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement, S: ready for review
#157 - Tweaks to tuner code
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: bug, S: ready for review
#155 - Feat/increase tuning verbosity
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 1 comment
#154 - NeuroMLTuner: return fitted values as strings with units for easy consumption?
Issue -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 1 comment
Labels: T: enhancement
#152 - NeuroML 2.2 release
Pull Request -
State: closed - Opened by pgleeson almost 3 years ago
- 2 comments
#150 - Generalise modification of parameters in NeuroMLController
Issue -
State: open - Opened by sanjayankur31 almost 3 years ago
- 2 comments
Labels: T: enhancement, Help wanted, good first issue
#146 - Add man pages for all CLI tools
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement
#145 - Add tuning example to CI
Issue -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement
#143 - Feat/extra requires
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 2 comments
Labels: S: ready for review
#141 - Manage or document additional requirements for other simulation tools
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 4 comments
Labels: T: enhancement
#140 - [Bug] Simulation tools do not save results to consistent locations
Issue -
State: open - Opened by jonrkarr almost 3 years ago
- 2 comments
#139 - [Bug] jNeuroML ignores errors with NetPyNe
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 1 comment
#138 - [Bug] Brian2 simulation function produces space-separated results rather than tab-separated results
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 1 comment
#136 - [Bug] Length of time courses is not configured consistently with Brian2 and NetPyNe
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 1 comment
#134 - feat(pynml): add `-moose` option
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement, S: ready for review
#133 - Add `-swc` option to export NeuroML cell files to SWC format
Issue -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 7 comments
Labels: T: enhancement, good first issue
#131 - Provide shorter aliases to `run...` methods?
Issue -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement, P: low
#129 - Would it be useful to add functionality to search neuromldb in `pynml`?
Issue -
State: closed - Opened by sanjayankur31 almost 3 years ago
Labels: T: enhancement, T: question
#127 - Feat/issue 126: allow programmatic access to output of jnml from validation
Pull Request -
State: closed - Opened by sanjayankur31 almost 3 years ago
- 5 comments
Labels: T: enhancement, S: ready for review, P: low
#125 - Provide cleaner error messages
Issue -
State: closed - Opened by jonrkarr almost 3 years ago
- 1 comment
Labels: T: enhancement
#121 - PR: list recordables
Pull Request -
State: closed - Opened by sanjayankur31 about 3 years ago
- 3 comments
Labels: T: enhancement, S: ready for review
#120 - Add option to generate and save simulation output plots using matplotlib when Display is used in LEMS
Issue -
State: closed - Opened by sanjayankur31 about 3 years ago
- 1 comment
Labels: T: enhancement
#114 - Create python-publish.yml
Pull Request -
State: closed - Opened by sanjayankur31 about 3 years ago
- 3 comments
Labels: T: enhancement
#108 - feat: add function to validate NeuroML2 LEMS file
Pull Request -
State: closed - Opened by sanjayankur31 over 3 years ago
Labels: T: enhancement, S: ready for review
#107 - Add cell builder utility functions
Pull Request -
State: closed - Opened by sanjayankur31 over 3 years ago
- 10 comments
Labels: T: enhancement, S: ready for review
#105 - Add helper methods to build cells
Issue -
State: closed - Opened by sanjayankur31 over 3 years ago
Labels: T: enhancement, S: release pending
#98 - What is the affect of the Simulation/@method attribute?
Issue -
State: open - Opened by jonrkarr over 3 years ago
- 3 comments
Labels: T: question
#96 - feat: update matplotlib usage to remove deprecated methods
Pull Request -
State: closed - Opened by sanjayankur31 over 3 years ago
- 1 comment
Labels: S: ready for review
#94 - enh(pynml): add -netpyne option
Pull Request -
State: closed - Opened by sanjayankur31 over 3 years ago
#93 - Add `-moose` option to pynml to export models to MOOSE
Issue -
State: closed - Opened by sanjayankur31 over 3 years ago
Labels: T: enhancement
#89 - Create a pure Python SWC -> NeuroML converter
Issue -
State: closed - Opened by pgleeson over 3 years ago
- 18 comments
Labels: T: enhancement