Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / NeuralEnsemble/libNeuroML issues and pull requests

#206 - Move gates of undetermined types to standard ones where possible

Pull Request - State: open - Opened by sanjayankur31 about 1 month ago - 1 comment
Labels: T: bugfix

#205 - Python object model does not load gates into correct attributes when `type=` is used

Issue - State: open - Opened by sanjayankur31 about 1 month ago - 1 comment
Labels: T: bug

#204 - feat: support py3.13

Pull Request - State: closed - Opened by sanjayankur31 4 months ago

#203 - 2.3.2: with some features to handle "generics"

Pull Request - State: open - Opened by sanjayankur31 4 months ago

#202 - fix(nml): handle cell root as a special case

Pull Request - State: closed - Opened by sanjayankur31 5 months ago

#200 - To v0.6.3 - for NML v2.3.1 release

Pull Request - State: closed - Opened by pgleeson 6 months ago

#199 - Docs: remove examples and link to docs.neuroml.org instead

Issue - State: open - Opened by sanjayankur31 6 months ago
Labels: T: bug, T: enhancement, C: documentation

#196 - Changes for NeuroML v2.3.1 release

Pull Request - State: closed - Opened by pgleeson 7 months ago

#195 - Feat: support addition of new LEMS Components to NeuroML models

Pull Request - State: closed - Opened by sanjayankur31 7 months ago - 3 comments
Labels: T: enhancement

#194 - Feat/3.13 fixes do not enable gha

Pull Request - State: closed - Opened by sanjayankur31 8 months ago

#193 - Feat/3.13 fixes do not enable gha

Pull Request - State: closed - Opened by sanjayankur31 8 months ago

#192 - WIP: testing py3.13

Pull Request - State: open - Opened by sanjayankur31 8 months ago

#191 - feat(memb-pots): do not validate on addition

Pull Request - State: closed - Opened by sanjayankur31 9 months ago

#190 - Enable toggling of build time validation

Pull Request - State: closed - Opened by sanjayankur31 9 months ago
Labels: T: enhancement

#189 - feat!: regenerate for 2.3.1

Pull Request - State: closed - Opened by sanjayankur31 10 months ago - 2 comments

#188 - Test on macos-14, which will become default mac-latest version

Pull Request - State: closed - Opened by pgleeson 10 months ago

#187 - Extend `get_segment_groups_from_substring` to include an `unbranched` filter

Pull Request - State: closed - Opened by sanjayankur31 12 months ago
Labels: T: enhancement

#186 - Feat/py312

Pull Request - State: closed - Opened by sanjayankur31 about 1 year ago

#185 - More documentation for writers/loaders

Pull Request - State: closed - Opened by sanjayankur31 about 1 year ago

#184 - docs(writers): document classes and methods

Pull Request - State: closed - Opened by sanjayankur31 about 1 year ago

#183 - fix(loader): test for absolute paths in includes

Pull Request - State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement, S: ready for review

#182 - Loader: check if an included path is absolute, and only add base path if not

Issue - State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement, T: bugfix

#181 - To v0.5.5; updated schema (with hindmarsh rose) and regenerated nml.py

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#180 - To v0.5.4

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#179 - Use natsort to properly sort segments/groups when optimising

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#178 - Towards semi-automated path generation

Pull Request - State: closed - Opened by sanjayankur31 over 1 year ago - 2 comments
Labels: T: enhancement

#177 - Feat/cell optimise natsort -> exp

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#176 - feat(nml.py): use natsort to properly sort segments/groups when optimising

Pull Request - State: closed - Opened by sanjayankur31 over 1 year ago - 1 comment
Labels: T: enhancement

#175 - libNeuroML and GraphQL and generateDS.py

Issue - State: open - Opened by dkuhlman over 1 year ago - 1 comment

#174 - To v0.5.3; uses setup.cfg; tested on mac & win too

Pull Request - State: closed - Opened by pgleeson over 1 year ago

#173 - Chore/remove setup.py

Pull Request - State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement, S: ready for review

#172 - Use `graph-tool` instead of `networkx` for morphology/graph related operations

Issue - State: closed - Opened by sanjayankur31 over 1 year ago
Labels: T: enhancement

#171 - numpy should be an explicit requirement

Pull Request - State: closed - Opened by pgleeson almost 2 years ago - 1 comment

#170 - feat(schema): link to schema documentation index (cosmetic change)

Pull Request - State: closed - Opened by sanjayankur31 almost 2 years ago
Labels: T: enhancement, S: ready for review

#169 - Regenerate for NeuroML2#205

Pull Request - State: closed - Opened by sanjayankur31 almost 2 years ago - 1 comment
Labels: T: enhancement

#168 - Changes for NML v2.3 release

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#167 - Minor update on ci script

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#166 - fix: refactor `print_` to remove circular imports

Pull Request - State: closed - Opened by sanjayankur31 almost 2 years ago

#165 - import of neuroml.loaders has been removed

Issue - State: closed - Opened by pgleeson almost 2 years ago - 2 comments
Labels: T: bug

#164 - test(lengths): remove dot exporter method and pygraphviz dev dep

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#163 - Feat/lengths -> exp

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#162 - Development -> exp

Pull Request - State: closed - Opened by pgleeson almost 2 years ago

#161 - chore: format with black

Pull Request - State: closed - Opened by sanjayankur31 almost 2 years ago

#160 - Add graph representation for morphology, and some methods to fetch shortest lengths between segments

Pull Request - State: closed - Opened by sanjayankur31 almost 2 years ago - 2 comments
Labels: T: enhancement, S: ready for review

#159 - ci(py311): add py311 to matrix/setup.py

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago

#157 - fix(loaders): do not empty list of includes even if `include_includes…

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago - 1 comment
Labels: T: enhancement, T: bugfix

#156 - feat(nml.py): add level 2 validation for SegmentGroup

Pull Request - State: open - Opened by sanjayankur31 about 2 years ago - 1 comment
Labels: T: enhancement, S: waiting for reporter

#155 - feat!(loaders): remove deprecated SWCLoader class

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago - 3 comments
Labels: T: enhancement, T: breaking change

#154 - Improvements noted in #153

Pull Request - State: closed - Opened by sanjayankur31 about 2 years ago
Labels: T: enhancement

#153 - cell util improvements

Issue - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#152 - Add human readable text to validation errors produced by generateds

Issue - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#151 - NEURON compatible morphologies from ArrayMorphology.

Pull Request - State: open - Opened by christian-oreilly over 2 years ago - 9 comments
Labels: T: enhancement, S: waiting for reporter

#150 - Feat/add sectionise method

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#149 - Feat/doc tweaks

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago

#148 - Add `add_unbranched_segments` to `Cell`

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#147 - Feat/improve nml constructors: adds type hints to constructors to help users

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago - 3 comments

#146 - Migrate jnml -info for channel files to libNeuroML?

Issue - State: open - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement, S: Help required

#145 - Feat/migrate cell builder

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago

#144 - Migrates the component_factory etc. utilities to libNeuroML

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#143 - Feat: get information on possible parents

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#142 - info method on `annotation` raises Attribute Error

Issue - State: closed - Opened by irahulsonkar over 2 years ago - 2 comments

#141 - Resource warning on using `read_neuroml2_file`

Issue - State: open - Opened by irahulsonkar over 2 years ago
Labels: T: enhancement

#140 - Feat: Add a `validate()` method to each component type class definition

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#139 - ComponentType classes in nml.py ignore extra arguments in constructors

Issue - State: closed - Opened by sanjayankur31 over 2 years ago - 1 comment
Labels: T: bug

#138 - Fix/137 mutable default args

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago - 2 comments
Labels: T: bug

#137 - Successive calls to `read_neuroml2_file` do not re-include files

Issue - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: bug

#136 - Fix/info get all members

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago

#135 - Make info return list/dict if required, move common functions to generatedssupersuper

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#134 - add info etc. methods to IncludeType

Issue - State: closed - Opened by sanjayankur31 over 2 years ago
Labels: T: enhancement

#133 - Fix/handle classes without docstring

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago

#132 - To v0.4.1

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#131 - Feat/add info improvements

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#130 - Feat/sync no neurolexid in basewithoutid

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago

#129 - Feat/add info improvements

Pull Request - State: closed - Opened by pgleeson over 2 years ago

#128 - Feat/sync schema neuroml 189

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago - 1 comment

#127 - Feat/add info improvements

Pull Request - State: closed - Opened by sanjayankur31 over 2 years ago - 9 comments
Labels: T: enhancement

#126 - Extend generic `info` method to include an option to only show members that have some value set

Issue - State: closed - Opened by sanjayankur31 over 2 years ago - 5 comments
Labels: T: enhancement

#125 - To v0.4.0

Pull Request - State: closed - Opened by pgleeson over 2 years ago - 2 comments

#124 - To v0.4.0 using NeuroML schema for v2.3

Pull Request - State: closed - Opened by pgleeson almost 3 years ago

#123 - BREAKING CHANGE: drop py2 support

Pull Request - State: closed - Opened by sanjayankur31 about 3 years ago
Labels: T: enhancement

#122 - Feat/remove unused deps

Pull Request - State: closed - Opened by sanjayankur31 about 3 years ago

#121 - [Bug] Outdated/unused dependencies (pymongo, simplejson)?

Issue - State: closed - Opened by mstimberg about 3 years ago - 3 comments
Labels: T: bug

#120 - chore(py27): pin numexpr

Pull Request - State: closed - Opened by sanjayankur31 about 3 years ago

#119 - NeuroML 2.2 release

Pull Request - State: closed - Opened by pgleeson about 3 years ago

#118 - Fix/py2 stringio

Pull Request - State: closed - Opened by sanjayankur31 about 3 years ago
Labels: T: bug

#116 - ci: ignore nml.py for flake

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago

#115 - feat: add method to add child/children elements to objects

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago - 2 comments
Labels: T: enhancement

#114 - Raise TypeError if file loaded is not a NeuroML file

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago - 1 comment
Labels: T: bug

#113 - [Bug] Errors aren't raised on parsing non-NeuroML files

Issue - State: closed - Opened by jonrkarr over 3 years ago - 5 comments
Labels: T: bug, S: waiting for reporter

#112 - feat: format with black

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago
Labels: T: enhancement

#111 - Drop serialisation and arraymorph features (being implemented in NeuroMLlite)

Issue - State: closed - Opened by sanjayankur31 over 3 years ago - 6 comments
Labels: T: enhancement, T: question

#109 - feat: use pydata theme

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago

#108 - feat: add text explaining correspondence between schema and core classes

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago - 2 comments
Labels: T: enhancement, C: documentation