Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Nesvilab/philosopher issues and pull requests
#371 - panic: Cannot write file. open /tmp/proteomes.csv: permission denied
Issue -
State: closed - Opened by cpanse almost 2 years ago
- 1 comment
#370 - fix broken link to the docs
Pull Request -
State: closed - Opened by fabianegli almost 2 years ago
- 1 comment
#369 - Broken links
Issue -
State: closed - Opened by fabianegli almost 2 years ago
- 1 comment
Labels: enhancement
#368 - Fix broken link and add explanatory variables
Pull Request -
State: closed - Opened by fabianegli almost 2 years ago
- 3 comments
Labels: enhancement
#367 - `${PHILOSOPHER} database --id UP000001940` does not download full reference proteome anymore
Issue -
State: closed - Opened by cpanse almost 2 years ago
- 4 comments
Labels: bug
#366 - WARN url `https://philosopher/releases` is not working
Issue -
State: closed - Opened by cpanse almost 2 years ago
- 1 comment
Labels: bug
#365 - wrong output using `${PHILOSOPHER} database` v4.3
Issue -
State: closed - Opened by cpanse about 2 years ago
- 2 comments
#364 - replacing the uniprot api
Pull Request -
State: closed - Opened by prvst about 2 years ago
#363 - Fix uniprot URL link
Pull Request -
State: closed - Opened by jcharkow about 2 years ago
- 1 comment
#362 - Philosopher 4.2.2 cannot annotate database
Issue -
State: closed - Opened by asifratul about 2 years ago
- 1 comment
#360 - V4.2.2
Pull Request -
State: closed - Opened by prvst about 2 years ago
#357 - Database - Protein existence
Issue -
State: closed - Opened by f-huber about 2 years ago
- 5 comments
Labels: enhancement
#356 - RemoveAll .: invalid argument
Issue -
State: closed - Opened by prvst about 2 years ago
- 10 comments
Labels: help wanted
#354 - Is there any updates of the software?
Issue -
State: closed - Opened by chuliangcui about 2 years ago
#353 - panic: runtime error: index out of range [1] with length 1
Issue -
State: closed - Opened by seongminlab about 2 years ago
- 9 comments
Labels: help wanted
#352 - Add basic init script to initialize Assets
Pull Request -
State: closed - Opened by chhh about 2 years ago
- 1 comment
#350 - Problem for quantification of TMT16 experiments
Issue -
State: closed - Opened by fstein about 2 years ago
- 16 comments
Labels: help wanted
#349 - Philosopher updated but generated bugs. Can I get back Philosopher 4.1.1?
Issue -
State: closed - Opened by chuliangcui about 2 years ago
- 15 comments
Labels: help wanted
#348 - Help needed. ProteinProphet does not start.
Issue -
State: closed - Opened by fstein about 2 years ago
- 19 comments
Labels: help wanted
#347 - Update PeptideProphet
Issue -
State: closed - Opened by JB91451 about 2 years ago
- 1 comment
Labels: enhancement
#346 - fix serialization of empty slice
Pull Request -
State: closed - Opened by guoci about 2 years ago
#345 - Fix empty slice serialization
Pull Request -
State: closed - Opened by guoci about 2 years ago
#344 - Cannot decode packed binary
Issue -
State: closed - Opened by prvst about 2 years ago
- 1 comment
Labels: help wanted
#342 - print traceback for fatal errors
Pull Request -
State: closed - Opened by guoci about 2 years ago
#341 - bugfix serialization
Pull Request -
State: closed - Opened by guoci about 2 years ago
- 2 comments
#340 - V4.2.2
Pull Request -
State: closed - Opened by prvst about 2 years ago
#338 - Asynchronous file reading issue with folders
Issue -
State: closed - Opened by prvst over 2 years ago
- 5 comments
Labels: bug
#336 - removing raw reader
Pull Request -
State: closed - Opened by prvst over 2 years ago
#335 - Rc v4.2.1
Pull Request -
State: closed - Opened by prvst over 2 years ago
#332 - Philosopher Filter not recognizing .pepxml?
Issue -
State: closed - Opened by tjlundgren over 2 years ago
- 1 comment
#330 - TMT6 quantification using pipeline command does not quantify correct channels
Issue -
State: closed - Opened by fstein over 2 years ago
- 3 comments
Labels: bug, help wanted
#329 - Omit cross os bins
Pull Request -
State: closed - Opened by prvst over 2 years ago
#328 - Help needed. Empty PSM list stops pipeline.
Issue -
State: closed - Opened by fstein over 2 years ago
- 36 comments
Labels: help wanted
#327 - Writing philosopher output automatically into log file
Issue -
State: closed - Opened by fstein over 2 years ago
- 10 comments
Labels: enhancement
#326 - runtime error
Issue -
State: closed - Opened by prvst over 2 years ago
- 2 comments
Labels: help wanted
#323 - Issue with pipeline LFQ
Issue -
State: closed - Opened by Naadir-Ganief over 2 years ago
- 4 comments
Labels: help wanted
#319 - omit Linux executables in a Windows build and vice versa
Pull Request -
State: closed - Opened by guoci over 2 years ago
- 5 comments
#317 - Nogroups
Pull Request -
State: closed - Opened by prvst over 2 years ago
#316 - fixing ptm filtering
Pull Request -
State: closed - Opened by prvst over 2 years ago
#315 - cannot decode packed binary. msgpack: invalid code=d3 decoding bytes length
Issue -
State: closed - Opened by stsour over 2 years ago
- 2 comments
Labels: help wanted
#314 - bugfix `sys.Restore`
Pull Request -
State: closed - Opened by guoci over 2 years ago
#313 - bugfix data restore
Pull Request -
State: closed - Opened by guoci over 2 years ago
#307 - reordering struct fields
Pull Request -
State: closed - Opened by prvst over 2 years ago
#306 - fixed the removeAll error
Pull Request -
State: closed - Opened by prvst over 2 years ago
#304 - pushing fix
Pull Request -
State: closed - Opened by prvst over 2 years ago
#296 - Pipeline stops with error for Integrated Report step (Abacus).
Issue -
State: closed - Opened by fstein over 2 years ago
- 15 comments
Labels: bug
#295 - philosophers on Linux analysis for AP-MS data
Issue -
State: closed - Opened by prvst over 2 years ago
- 8 comments
Labels: bug
#289 - philosopher pipeline does not run through
Issue -
State: closed - Opened by fstein over 2 years ago
- 11 comments
#274 - cannot decode packed binary. msgpack: invalid code=d3 decoding bytes length
Issue -
State: closed - Opened by apataskar almost 3 years ago
- 4 comments
Labels: help wanted
#261 - ProteinProphet Error
Issue -
State: open - Opened by uonnet almost 3 years ago
- 14 comments
Labels: help wanted
#251 - Bug in mod reporting if multiple PSMs are tied for rank 1 for a spectrum
Issue -
State: closed - Opened by mriffle almost 3 years ago
- 2 comments
Labels: bug
#165 - ProteinProphet: 'std::runtime_error' -what(): locale::facet::_S_create_c_locale name not valid time="15:20:59" level=fatal msg="Cannot execute program. There was an error with ProteinProphet, please check your parameters and input files"
Issue -
State: closed - Opened by jjGG over 3 years ago
- 5 comments
Labels: help wanted