Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / NVIDIA/VariantWorks issues and pull requests

#100 - [vcfio] fix data type and improve perf

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#100 - [vcfio] fix data type and improve perf

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#99 - Unite scripts under `samples` folder and the snippets in `docs/source/examples.rst`

Issue - State: closed - Opened by ohadmo over 4 years ago - 1 comment
Labels: documentation, enhancement

#99 - Unite scripts under `samples` folder and the snippets in `docs/source/examples.rst`

Issue - State: closed - Opened by ohadmo over 4 years ago - 1 comment
Labels: documentation, enhancement

#98 - [Doc] Enforce Sphinx documentation generator

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 3 comments
Labels: documentation

#98 - [Doc] Enforce Sphinx documentation generator

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 3 comments
Labels: documentation

#96 - [vcfio] update data frame output and internal API

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#96 - [vcfio] update data frame output and internal API

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#95 - stitcher for overlapping sequence predictions

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#95 - stitcher for overlapping sequence predictions

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#94 - [vcfio] INFO column data types are not preserved

Issue - State: closed - Opened by edawson over 4 years ago - 1 comment
Labels: enhancement, I/O

#94 - [vcfio] INFO column data types are not preserved

Issue - State: closed - Opened by edawson over 4 years ago - 1 comment
Labels: enhancement, I/O

#93 - [vcfio] INFO/FORMAT field parser does not support number="G"

Issue - State: closed - Opened by edawson over 4 years ago
Labels: bug, I/O

#93 - [vcfio] INFO/FORMAT field parser does not support number="G"

Issue - State: closed - Opened by edawson over 4 years ago
Labels: bug, I/O

#92 - Add haploid label encoder

Issue - State: closed - Opened by rahulmohan over 4 years ago - 2 comments
Labels: enhancement, encodings

#92 - Add haploid label encoder

Issue - State: closed - Opened by rahulmohan over 4 years ago - 2 comments
Labels: enhancement, encodings

#91 - Heuristic panel of normals, annotation and filtering API and CLI tools

Pull Request - State: closed - Opened by edawson over 4 years ago - 1 comment

#91 - Heuristic panel of normals, annotation and filtering API and CLI tools

Pull Request - State: closed - Opened by edawson over 4 years ago - 1 comment

#90 - [skip-ci][vcfio] update data frame output and internal API structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#90 - [skip-ci][vcfio] update data frame output and internal API structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#89 - Added summary encoder

Pull Request - State: closed - Opened by rahulmohan over 4 years ago - 3 comments

#89 - Added summary encoder

Pull Request - State: closed - Opened by rahulmohan over 4 years ago - 3 comments

#88 - [visualizer] Add visualization for variant encoded pileup

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 2 comments

#88 - [visualizer] Add visualization for variant encoded pileup

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 2 comments

#87 - [docs] update example docs

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#87 - [docs] update example docs

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#86 - [summary_encoder] add summary encoder class to generate summary statistics encodings

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#86 - [summary_encoder] add summary encoder class to generate summary statistics encodings

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#85 - [pileup_encoder] encoder layer configurability

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#85 - [pileup_encoder] encoder layer configurability

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#84 - [io] add dataframe output for parsed I/O

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#83 - [sample_encoding] add multi sample support

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#83 - [sample_encoding] add multi sample support

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, encodings

#82 - [pileup_encoder] indel encoding for pileups

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#82 - [pileup_encoder] indel encoding for pileups

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#81 - [pileup_encoder] fix pileup position indexing from bam file

Pull Request - State: closed - Opened by tijyojwad over 4 years ago
Labels: bug

#81 - [pileup_encoder] fix pileup position indexing from bam file

Pull Request - State: closed - Opened by tijyojwad over 4 years ago
Labels: bug

#80 - [sdk] fix pip install

Pull Request - State: closed - Opened by tijyojwad over 4 years ago
Labels: bug

#80 - [sdk] fix pip install

Pull Request - State: closed - Opened by tijyojwad over 4 years ago
Labels: bug

#79 - [io] load vcf entries into data frame

Issue - State: closed - Opened by tijyojwad over 4 years ago - 1 comment
Labels: enhancement, I/O

#79 - [io] load vcf entries into data frame

Issue - State: closed - Opened by tijyojwad over 4 years ago - 1 comment
Labels: enhancement, I/O

#78 - [Tests] Refactored mocked input handling

Pull Request - State: closed - Opened by ohadmo over 4 years ago
Labels: enhancement

#78 - [Tests] Refactored mocked input handling

Pull Request - State: closed - Opened by ohadmo over 4 years ago
Labels: enhancement

#77 - [pileup_encoder] add encoding for indels

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#77 - [pileup_encoder] add encoding for indels

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#76 - [docs] fix copyright headers

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#76 - [docs] fix copyright headers

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#75 - [docs] combine readme and index page docs into single source

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#75 - [docs] combine readme and index page docs into single source

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#74 - [readme] Remove pypi installation instructions

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 1 comment

#74 - [readme] Remove pypi installation instructions

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 1 comment

#73 - [data loader] add tests for data loader implementations

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: I/O

#73 - [data loader] add tests for data loader implementations

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: I/O

#72 - [sdk] add style check to pre push

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#72 - [sdk] add style check to pre push

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#71 - [pileup_encoder] normalize quality scores

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#71 - [pileup_encoder] normalize quality scores

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#69 - [dataloader] add an HDF5 data loader

Issue - State: closed - Opened by tijyojwad over 4 years ago

#69 - [dataloader] add an HDF5 data loader

Issue - State: closed - Opened by tijyojwad over 4 years ago

#68 - [samples] add README for cnn sample caller

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#68 - [samples] add README for cnn sample caller

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#67 - [samples] add hdf5 pileup generator

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#67 - [samples] add hdf5 pileup generator

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#66 - [sdk][CI] Add code style check and CI support

Pull Request - State: closed - Opened by ohadmo over 4 years ago

#66 - [sdk][CI] Add code style check and CI support

Pull Request - State: closed - Opened by ohadmo over 4 years ago

#65 - [tests] rename simple vc test to integration test

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#65 - [tests] rename simple vc test to integration test

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#64 - [CI] Add gpuCI integration folders layout

Pull Request - State: closed - Opened by ohadmo over 4 years ago
Labels: enhancement

#64 - [CI] Add gpuCI integration folders layout

Pull Request - State: closed - Opened by ohadmo over 4 years ago
Labels: enhancement

#63 - [io] add base class for io readers/writers

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#63 - [io] add base class for io readers/writers

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#62 - [Tests] Refactored mocked input handling

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 2 comments
Labels: enhancement

#62 - [Tests] Refactored mocked input handling

Pull Request - State: closed - Opened by ohadmo over 4 years ago - 2 comments
Labels: enhancement

#61 - [docs] add initial api and intro doc

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#61 - [docs] add initial api and intro doc

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#60 - [docs] add documentation for VariantWorks v0.1.0

Issue - State: closed - Opened by tijyojwad over 4 years ago - 2 comments
Labels: documentation

#60 - [docs] add documentation for VariantWorks v0.1.0

Issue - State: closed - Opened by tijyojwad over 4 years ago - 2 comments
Labels: documentation

#59 - [sdk] update package structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#59 - [sdk] update package structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#58 - [sample] add sample SNP caller

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#58 - [sample] add sample SNP caller

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#57 - [tests] MockPyVCFReader test exposes underlying implementation details

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#57 - [tests] MockPyVCFReader test exposes underlying implementation details

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#56 - [vw] refactor modules into a better structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago - 1 comment

#56 - [vw] refactor modules into a better structure

Pull Request - State: closed - Opened by tijyojwad over 4 years ago - 1 comment

#55 - [logging] add logger to VariantWorks

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: documentation

#55 - [logging] add logger to VariantWorks

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: documentation

#54 - [sample] add simple variant caller sample

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#54 - [sample] add simple variant caller sample

Issue - State: closed - Opened by tijyojwad over 4 years ago
Labels: enhancement

#53 - [docs] add type info to APIs

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: documentation

#53 - [docs] add type info to APIs

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: documentation

#52 - [vcf_writer] add zygosity probability to INFO column

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, I/O

#52 - [vcf_writer] add zygosity probability to INFO column

Issue - State: open - Opened by tijyojwad over 4 years ago
Labels: enhancement, I/O

#51 - [test] add eval callback

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#51 - [test] add eval callback

Pull Request - State: closed - Opened by tijyojwad over 4 years ago

#50 - [sdk] add copyright header to src files

Pull Request - State: closed - Opened by tijyojwad over 4 years ago