NP-Omix/BioCompass issues and pull requests

#58 - Bump wheel from 0.29.0 to 0.38.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#57 - Bump pip from 8.1.2 to 21.1

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#56 - Bump pip from 8.1.2 to 19.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#55 - Convert to Python3

Pull Request - State: open - Opened by ralic over 7 years ago

#54 - Ignore "noisy" clusters

Issue - State: open - Opened by castelao almost 8 years ago
Labels: enhancement

#53 - Nonsense epsilon

Issue - State: open - Opened by castelao almost 8 years ago
Labels: bug

#52 - One more modification to the text structure

Pull Request - State: closed - Opened by tiagolbiotech almost 8 years ago

#51 - Fixing usage.rst structure erros

Pull Request - State: closed - Opened by tiagolbiotech almost 8 years ago

#50 - Updating basic usage instructions

Pull Request - State: closed - Opened by tiagolbiotech almost 8 years ago

#49 - Error testing version 0.9.2

Issue - State: closed - Opened by tiagolbiotech about 8 years ago - 4 comments
Labels: bug

#48 - Dev

Pull Request - State: closed - Opened by castelao about 8 years ago

#47 - Bug creating multigeneblast database at version 0.9.1

Issue - State: closed - Opened by tiagolbiotech about 8 years ago
Labels: bug

#46 - Goals

Issue - State: open - Opened by tiagolbiotech about 8 years ago
Labels: enhancement

#45 - BUGFIX #44

Pull Request - State: closed - Opened by castelao about 8 years ago

#44 - Testing BioCompass 0.9.0

Issue - State: closed - Opened by tiagolbiotech about 8 years ago
Labels: bug

#43 - 0.9.0

Pull Request - State: closed - Opened by castelao about 8 years ago

#42 - Updating usage instructions after re-testing BioCompass 0.6

Pull Request - State: closed - Opened by tiagolbiotech about 8 years ago

#41 - Updating required biopython version.

Pull Request - State: closed - Opened by castelao about 8 years ago

#40 - Proofreading and updating docs (and README)

Pull Request - State: closed - Opened by tiagolbiotech about 8 years ago

#39 - Testing BioCompass in AWS EC2, installing requirements using conda

Issue - State: open - Opened by tiagolbiotech about 8 years ago - 5 comments
Labels: bug

#38 - Testing BioCompass in AWS EC2 instance type ami-05384865 (ubuntu-wily-15.10-amd64-server)

Issue - State: open - Opened by tiagolbiotech about 8 years ago - 2 comments
Labels: bug

#37 - Updating usage.rst

Pull Request - State: closed - Opened by tiagolbiotech about 8 years ago

#36 - Minor error at step C of Makefile

Issue - State: closed - Opened by tiagolbiotech about 8 years ago - 2 comments
Labels: bug

#35 - Several bugfixes

Pull Request - State: closed - Opened by castelao about 8 years ago

#34 - Dev

Pull Request - State: closed - Opened by castelao about 8 years ago

#33 - Moving changes from dev branch into master branch

Pull Request - State: closed - Opened by castelao about 8 years ago

#32 - Minor upgrade 0.5

Pull Request - State: closed - Opened by tiagolbiotech about 8 years ago

#31 - Fixing repository to NP-Omix instead of castelao.

Pull Request - State: closed - Opened by castelao about 8 years ago

#30 - Updating package name at documentation.

Pull Request - State: closed - Opened by castelao about 8 years ago

#29 - Upgrade html

Pull Request - State: closed - Opened by tiagolbiotech about 8 years ago

#28 - Removing CNAME. There is some conflict.

Pull Request - State: closed - Opened by castelao about 8 years ago

#27 - Dev

Pull Request - State: closed - Opened by castelao about 8 years ago

#26 - Initialize unitests system

Issue - State: open - Opened by castelao about 8 years ago

#25 - Migrate command line system to Click

Issue - State: closed - Opened by castelao about 8 years ago
Labels: enhancement

#24 - Add feature to check if MiBIG cluster are update

Issue - State: closed - Opened by tiagolbiotech about 8 years ago - 2 comments

#23 - Incorporate category_gen.py into bioCompass

Issue - State: closed - Opened by castelao about 8 years ago

#22 - Download MiBIG to current BioCompass

Issue - State: closed - Opened by tiagolbiotech about 8 years ago - 1 comment

#21 - Incorporate table_1_extender.py into bioCompass

Issue - State: closed - Opened by castelao about 8 years ago

#20 - Incorporate table_1_gen.py

Issue - State: open - Opened by castelao about 8 years ago
Labels: enhancement

#19 - Avoid self loops in the final edge output

Issue - State: open - Opened by castelao about 8 years ago
Labels: enhancement

#18 - Consider self hit

Issue - State: open - Opened by castelao about 8 years ago
Labels: enhancement

#17 - BUGFIX: table_1_gen.py and makedb.py

Pull Request - State: closed - Opened by castelao about 8 years ago

#16 - Some possible enhancements after publishing first version

Issue - State: open - Opened by tiagolbiotech about 8 years ago
Labels: enhancement

#15 - Trying to install python package in the wrong place.

Pull Request - State: closed - Opened by castelao over 8 years ago

#14 - Adding some support files and other improvements

Pull Request - State: closed - Opened by castelao over 8 years ago

#13 - Implementing up to step H and minimizing hardcoded paths

Pull Request - State: closed - Opened by castelao over 8 years ago

#12 - Fail creating the multigeneBLAST database

Issue - State: closed - Opened by tiagolbiotech over 8 years ago - 1 comment
Labels: bug

#11 - Fail if MultiGeneBlast is not in the PATH

Pull Request - State: closed - Opened by castelao over 8 years ago

#10 - Failed to run multigeneblast from other folder

Issue - State: closed - Opened by tiagolbiotech over 8 years ago - 1 comment
Labels: bug

#9 - Minimize hard coded paths in Makefile

Pull Request - State: closed - Opened by castelao over 8 years ago

#8 - Makefile could not find multigeneblast directory

Issue - State: closed - Opened by tiagolbiotech over 8 years ago
Labels: bug

#7 - Makefile can't find '../outputs/tables/PAL_db_dbbuild.fasta'

Issue - State: closed - Opened by tiagolbiotech over 8 years ago
Labels: bug

#6 - Including requirements.txt into MANIFEST.

Pull Request - State: closed - Opened by castelao over 8 years ago

#5 - Missing requirements and implementing step #E

Pull Request - State: closed - Opened by castelao over 8 years ago

#4 - Dev

Pull Request - State: closed - Opened by castelao over 8 years ago

#3 - Migrating run_bgcnet.sh functionalities into a Makefile

Pull Request - State: closed - Opened by castelao over 8 years ago

#2 - Package name

Issue - State: closed - Opened by castelao over 8 years ago
Labels: enhancement

#1 - Organizing scripts as a package

Pull Request - State: closed - Opened by castelao over 8 years ago

GitHub / NP-Omix/BioCompass issues and pull requests