NLPatVCU/medaCy issues and pull requests

#50 - Code coverage

Issue - State: closed - Opened by r-best almost 6 years ago
Labels: enhancement

#50 - Code coverage

Issue - State: closed - Opened by r-best almost 6 years ago
Labels: enhancement

#49 - [FEATURE REQUEST] Make Model class pickle-able

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago - 1 comment
Labels: enhancement, wontfix

#49 - [FEATURE REQUEST] Make Model class pickle-able

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago - 1 comment
Labels: enhancement, wontfix

#48 - Updated issue templates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#48 - Updated issue templates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#47 - [FEATURE REQUEST] Expand the scope of medaCy past NER

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires Code Refactoring

#47 - [FEATURE REQUEST] Expand the scope of medaCy past NER

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires Code Refactoring

#46 - Better README and split into Contribution + Bug fixes

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#46 - Better README and split into Contribution + Bug fixes

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#45 - Include real live data for tests to utilize

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago

#45 - Include real live data for tests to utilize

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago

#44 - Ascii Converter Bugfix

Pull Request - State: closed - Opened by r-best almost 6 years ago

#44 - Ascii Converter Bugfix

Pull Request - State: closed - Opened by r-best almost 6 years ago

#43 - Latest TAC System Updates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#43 - Latest TAC System Updates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#42 - Final touches for sub-version bump to v0.0.3

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#42 - Final touches for sub-version bump to v0.0.3

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#41 - Fixed medaCy installation error, created SystematicReviewPipeline

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#41 - Fixed medaCy installation error, created SystematicReviewPipeline

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#40 - Ascii converter

Pull Request - State: closed - Opened by r-best almost 6 years ago

#40 - Ascii converter

Pull Request - State: closed - Opened by r-best almost 6 years ago

#39 - Add pathos as a dependency in setup.py

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago

#39 - Add pathos as a dependency in setup.py

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago

#38 - Issue 3

Pull Request - State: closed - Opened by r-best almost 6 years ago - 1 comment

#38 - Issue 3

Pull Request - State: closed - Opened by r-best almost 6 years ago - 1 comment

#37 - Issue 5

Pull Request - State: closed - Opened by r-best almost 6 years ago

#37 - Issue 5

Pull Request - State: closed - Opened by r-best almost 6 years ago

#36 - Fixed a patch that went into master

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#36 - Fixed a patch that went into master

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#35 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#35 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#34 - Changed num_jobs default

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#34 - Changed num_jobs default

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#33 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#33 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#32 - Added package look up to make sure install works with site_packages, updated cross validate code

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#32 - Added package look up to make sure install works with site_packages, updated cross validate code

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#31 - Fixing messed up commits

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#31 - Fixing messed up commits

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#30 - Parallelized Training, Insured all tests that were previously failing now pass

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#30 - Parallelized Training, Insured all tests that were previously failing now pass

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#29 - Allow metamap.py to also cache results when metamapping just a string of text

Issue - State: open - Opened by CoreySutphin almost 6 years ago
Labels: enhancement

#29 - Allow metamap.py to also cache results when metamapping just a string of text

Issue - State: open - Opened by CoreySutphin almost 6 years ago
Labels: enhancement

#28 - Include a better interface for prediction.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: High Priority

#28 - Include a better interface for prediction.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: High Priority

#27 - Create a docker container with medaCy set up for easy first use

Issue - State: open - Opened by AndriyMulyar almost 6 years ago

#27 - Create a docker container with medaCy set up for easy first use

Issue - State: open - Opened by AndriyMulyar almost 6 years ago

#26 - Write converters for various annotation formats.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: good first issue

#26 - Write converters for various annotation formats.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: good first issue

#25 - Small changes under recent merge

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#25 - Small changes under recent merge

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#24 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#24 - Development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#23 - Fitting and Predicting models is now done through providing the Model class your pipeline, and calling relevant methods from the Model class.

Pull Request - State: closed - Opened by CoreySutphin almost 6 years ago

#23 - Fitting and Predicting models is now done through providing the Model class your pipeline, and calling relevant methods from the Model class.

Pull Request - State: closed - Opened by CoreySutphin almost 6 years ago

#22 - Makes tables from output

Pull Request - State: closed - Opened by daniela-llivina about 6 years ago - 1 comment

#22 - Makes tables from output

Pull Request - State: closed - Opened by daniela-llivina about 6 years ago - 1 comment

#21 - When performing cross validation, log predictions on the test data done at each fold.

Issue - State: closed - Opened by CoreySutphin about 6 years ago
Labels: enhancement, Requires ML Background

#21 - When performing cross validation, log predictions on the test data done at each fold.

Issue - State: closed - Opened by CoreySutphin about 6 years ago
Labels: enhancement, Requires ML Background

#20 - Add result -> latex table conversion

Issue - State: closed - Opened by AndriyMulyar about 6 years ago - 9 comments
Labels: enhancement, good first issue

#20 - Add result -> latex table conversion

Issue - State: closed - Opened by AndriyMulyar about 6 years ago - 9 comments
Labels: enhancement, good first issue

#19 - Add time stamps/tracking to logs to see how much time each component is taking.

Issue - State: closed - Opened by CoreySutphin about 6 years ago
Labels: enhancement, good first issue

#19 - Add time stamps/tracking to logs to see how much time each component is taking.

Issue - State: closed - Opened by CoreySutphin about 6 years ago
Labels: enhancement, good first issue

#18 - Refactor away UnitAnnotator and transition/test individual annotators for each unit type

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: Requires Code Refactoring

#18 - Refactor away UnitAnnotator and transition/test individual annotators for each unit type

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: Requires Code Refactoring

#17 - Make token merging optional during token annotation in each PipelineComponent.

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: Requires Code Refactoring

#16 - Deal with replacing non-ascii characters as a pre-processing step.

Issue - State: closed - Opened by AndriyMulyar about 6 years ago - 3 comments

#15 - Multi-thread feature extraction on documents during train

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: High Priority

#14 - Integrate MetamapLite as a component

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: enhancement

#13 - Write a number of useful examples in an /examples sub-directory of root.

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: enhancement

#12 - Refactor to implement sci-kit learn like functionality

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: enhancement, Requires Code Refactoring

#11 - Implement code for various feature representations

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: enhancement, Requires ML Background, High Priority

#10 - Plan and execute the inclusion of models into medaCy

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: enhancement

#9 - Create flow diagrams and figures describing how the medaCy works.

Issue - State: open - Opened by AndriyMulyar about 6 years ago
Labels: enhancement, good first issue

#8 - Begin writing sphinx documentation for package.

Issue - State: closed - Opened by AndriyMulyar about 6 years ago - 1 comment
Labels: help wanted, good first issue

#7 - Update README with example NER and results for n2c2.

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: enhancement

#6 - Updated README

Pull Request - State: closed - Opened by AndriyMulyar about 6 years ago

#5 - Line 58-62 metamap.py. Uses list comprehension to check if file exists in directory.

Issue - State: closed - Opened by thesw4rm about 6 years ago
Labels: enhancement, Requires Code Refactoring

#4 - Line 49 of metamap.py, recent_file should be added to the init docstring

Issue - State: closed - Opened by thesw4rm about 6 years ago
Labels: enhancement, good first issue

#3 - metamap.py Line 51, unclosed file opened for reading

Issue - State: closed - Opened by thesw4rm about 6 years ago
Labels: bug, Requires Code Refactoring

#2 - Unit Tests have metamap path hardcoded

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: bug

#1 - Allow Metamap to auto-cache output for later retrieval

Issue - State: closed - Opened by AndriyMulyar about 6 years ago
Labels: enhancement

GitHub / NLPatVCU/medaCy issues and pull requests