NLPatVCU/medaCy issues and pull requests

#100 - Remove unused pipeline component

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#100 - Remove unused pipeline component

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#99 - Fixes to documentation, re-organization of Dataset with nomenclature changes.

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#99 - Fixes to documentation, re-organization of Dataset with nomenclature changes.

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#98 - OSE-ADE pipeline file changes, BIG changes to how features are extracted and then used in model.py, cross validation can now write the cumulative predictions from each fold.

Pull Request - State: closed - Opened by CoreySutphin over 5 years ago

#98 - OSE-ADE pipeline file changes, BIG changes to how features are extracted and then used in model.py, cross validation can now write the cumulative predictions from each fold.

Pull Request - State: closed - Opened by CoreySutphin over 5 years ago

#97 - Ascii bugfix

Pull Request - State: closed - Opened by r-best over 5 years ago

#97 - Ascii bugfix

Pull Request - State: closed - Opened by r-best over 5 years ago

#96 - Ensured Windows compatibility for Vagrant implementation; Revised model creation example; Refactored regex in con_to_brat

Pull Request - State: closed - Opened by swfarnsworth over 5 years ago

#96 - Ensured Windows compatibility for Vagrant implementation; Revised model creation example; Refactored regex in con_to_brat

Pull Request - State: closed - Opened by swfarnsworth over 5 years ago

#95 - Vagrant implementation and user guide; Updates to con/brat converters and unit tests

Pull Request - State: closed - Opened by swfarnsworth over 5 years ago

#95 - Vagrant implementation and user guide; Updates to con/brat converters and unit tests

Pull Request - State: closed - Opened by swfarnsworth over 5 years ago

#94 - _restore_from_ascii() method in metamap.py throws "TypeError: list indices must be integers not strings" when dealing with a converted document.

Issue - State: closed - Opened by CoreySutphin over 5 years ago
Labels: bug

#94 - _restore_from_ascii() method in metamap.py throws "TypeError: list indices must be integers not strings" when dealing with a converted document.

Issue - State: closed - Opened by CoreySutphin over 5 years ago
Labels: bug

#93 - Added guide for wrapping medaCy compatible dataset + Removed sphinx dependency

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#93 - Added guide for wrapping medaCy compatible dataset + Removed sphinx dependency

Pull Request - State: closed - Opened by AndriyMulyar over 5 years ago

#92 - Vagrant implementation; Vagrant documentation; comprehensive regex testing for con/brat converters

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#92 - Vagrant implementation; Vagrant documentation; comprehensive regex testing for con/brat converters

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#91 - Update clinical_notes_model.md

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#91 - Update clinical_notes_model.md

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#90 - Updated docs, fixed tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#90 - Updated docs, fixed tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#89 - Added intersection, compute_ambiguity, compute_confusion_matrix methods to Annotation

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#89 - Added intersection, compute_ambiguity, compute_confusion_matrix methods to Annotation

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#88 - (Sphinx) Fixing issue with .gitignore

Pull Request - State: closed - Opened by r-best almost 6 years ago

#88 - (Sphinx) Fixing issue with .gitignore

Pull Request - State: closed - Opened by r-best almost 6 years ago

#87 - Sphinx updates

Pull Request - State: closed - Opened by r-best almost 6 years ago - 1 comment

#87 - Sphinx updates

Pull Request - State: closed - Opened by r-best almost 6 years ago - 1 comment

#86 - Examples and assertions

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#86 - Examples and assertions

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#85 - Fixed typos + updated format of reading Dataset

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#85 - Fixed typos + updated format of reading Dataset

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#84 - Typo in Utilizing Pre-trained NER models tutorial

Issue - State: closed - Opened by conteam almost 6 years ago - 1 comment

#84 - Typo in Utilizing Pre-trained NER models tutorial

Issue - State: closed - Opened by conteam almost 6 years ago - 1 comment

#83 - Updated small model link

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#83 - Updated small model link

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#82 - Removed small model dependency

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#82 - Removed small model dependency

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#81 - Updated installation instructions

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#81 - Updated installation instructions

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#80 - [FEATURE REQUEST] Add an option to use word embeddings during training

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement

#80 - [FEATURE REQUEST] Add an option to use word embeddings during training

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement

#79 - Fixed typos in documentation.

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#79 - Fixed typos in documentation.

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#78 - Updated NanoNLP to NLPatVCU

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#78 - Updated NanoNLP to NLPatVCU

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#77 - More features for Annotations

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#77 - More features for Annotations

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#76 - Added Drug Event pipeline, added Lexicon Component with unit tests, fixed bug where error was being thrown if spacy features were used returning Tokens, fixed bug with MetaMap hitting lowest prune depth

Pull Request - State: closed - Opened by CoreySutphin almost 6 years ago

#76 - Added Drug Event pipeline, added Lexicon Component with unit tests, fixed bug where error was being thrown if spacy features were used returning Tokens, fixed bug with MetaMap hitting lowest prune depth

Pull Request - State: closed - Opened by CoreySutphin almost 6 years ago

#75 - Merge pull request #73 from NanoNLP/development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#75 - Merge pull request #73 from NanoNLP/development

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#74 - MetaMap mapped_terms_to_spacy_ann Bug

Issue - State: closed - Opened by zazabar almost 6 years ago - 2 comments

#74 - MetaMap mapped_terms_to_spacy_ann Bug

Issue - State: closed - Opened by zazabar almost 6 years ago - 2 comments

#73 - API updates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#73 - API updates

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#72 - Documentation

Pull Request - State: closed - Opened by r-best almost 6 years ago

#72 - Documentation

Pull Request - State: closed - Opened by r-best almost 6 years ago

#71 - v0.0.6

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#71 - v0.0.6

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#70 - Adding test coverage configurations

Pull Request - State: closed - Opened by r-best almost 6 years ago

#70 - Adding test coverage configurations

Pull Request - State: closed - Opened by r-best almost 6 years ago

#69 - More documentation, guide, small fix to unit tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#69 - More documentation, guide, small fix to unit tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#68 - Added Annotations.diff(); unit tests

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#68 - Added Annotations.diff(); unit tests

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#67 - [FEATURE REQUEST] Functionality for analyzing the differences between two Annotation objects.

Issue - State: open - Opened by AndriyMulyar almost 6 years ago - 2 comments
Labels: enhancement

#67 - [FEATURE REQUEST] Functionality for analyzing the differences between two Annotation objects.

Issue - State: open - Opened by AndriyMulyar almost 6 years ago - 2 comments
Labels: enhancement

#66 - Created unit tests for con converters; added con-related unit tests t…

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#66 - Created unit tests for con converters; added con-related unit tests t…

Pull Request - State: closed - Opened by swfarnsworth almost 6 years ago

#65 - Documentation

Pull Request - State: closed - Opened by r-best almost 6 years ago

#65 - Documentation

Pull Request - State: closed - Opened by r-best almost 6 years ago

#64 - External Datasets, Models and Better Tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#64 - External Datasets, Models and Better Tests

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#63 - Release v0.0.4

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#63 - Release v0.0.4

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#62 - This pull request allows an outside mode to interface medaCy for prediction on strings.

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#62 - This pull request allows an outside mode to interface medaCy for prediction on strings.

Pull Request - State: closed - Opened by AndriyMulyar almost 6 years ago

#61 - Refactor to directly use JSON output from Metamap2016

Issue - State: open - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires Code Refactoring

#61 - Refactor to directly use JSON output from Metamap2016

Issue - State: open - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires Code Refactoring

#60 - Separate models into new python packages.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: Requires Code Refactoring, High Priority

#60 - Separate models into new python packages.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: Requires Code Refactoring, High Priority

#59 - Separate data into new python packages.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: Requires Code Refactoring, High Priority

#59 - Separate data into new python packages.

Issue - State: closed - Opened by AndriyMulyar almost 6 years ago
Labels: Requires Code Refactoring, High Priority

#58 - [FEATURE REQUEST] Option for label ranking in outputs

Issue - State: open - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires ML Background

#58 - [FEATURE REQUEST] Option for label ranking in outputs

Issue - State: open - Opened by AndriyMulyar almost 6 years ago
Labels: enhancement, Requires ML Background

#57 - Logging number of files loaded for training incorrectly stays the same despite different number of files being passed in

Issue - State: closed - Opened by CoreySutphin almost 6 years ago - 1 comment

#57 - Logging number of files loaded for training incorrectly stays the same despite different number of files being passed in

Issue - State: closed - Opened by CoreySutphin almost 6 years ago - 1 comment

GitHub / NLPatVCU/medaCy issues and pull requests