NKI-AI/dlup issues and pull requests

#155 - Documentation: `dlup.data.dataset.SlideImageDatasetBase` has incorrect docstring for `regions`

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 1 comment
Labels: Stale

#154 - Add colors to annotations

Issue - State: closed - Opened by jonasteuwen over 1 year ago - 2 comments
Labels: enhancement, Stale

#153 - Support halo annotations

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: documentation, python, ci

#152 - Entropy masker

Pull Request - State: closed - Opened by siemdejong over 1 year ago - 2 comments
Labels: wontfix

#151 - `ImageBackend.AUTODETECT` does not close file handlers

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 5 comments
Labels: bug, Stale

#150 - Bounding box property WSIAnnotations class errors when loading multipoint.

Issue - State: closed - Opened by Dafidofff over 1 year ago - 2 comments
Labels: bug, Stale

#149 - Improving typing

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: python, ci

#148 - Support multipoint

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: python

#147 - Implement anti-aliasing in tiff writer

Issue - State: closed - Opened by jonasteuwen over 1 year ago - 2 comments
Labels: enhancement, Stale

#146 - Limit bounds

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago - 3 comments
Labels: python

#145 - Added imagecodecs as a dependency

Pull Request - State: closed - Opened by AjeyPaiK over 1 year ago - 2 comments
Labels: python

#144 - Allow to select a different interpolator in TiffWriter

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago - 1 comment
Labels: python

#143 - Strict parsing of mypy

Issue - State: closed - Opened by jonasteuwen over 1 year ago - 1 comment
Labels: enhancement, Stale

#142 - Have a .toml file for mask-to-polygon

Issue - State: closed - Opened by rharkes over 1 year ago - 1 comment
Labels: enhancement, Stale

#141 - resampling is only implemented for RGB images, not for segmentation masks

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 6 comments
Labels: bug

#140 - Add message or progress bar when writing tiff

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 1 comment
Labels: enhancement, Stale

#139 - Allow `mpp` argument for `SlideImage.get_thumbnail`

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 3 comments
Labels: enhancement, Stale

#138 - Wsi to polygon

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago - 6 comments
Labels: python, ci

#137 - incorrect docstring of `SlideImage.get_thumbnail`

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 1 comment
Labels: documentation

#136 - WsiAnnotations does not support MultiPoint

Issue - State: closed - Opened by manyids2 over 1 year ago
Labels: bug

#135 - Feat: use `openslide.bounds-{}` if available

Issue - State: closed - Opened by YoniSchirris over 1 year ago - 3 comments
Labels: enhancement, Stale

#134 - Allow mask threshold of None

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: python

#133 - Extend concatdataset

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: python

#132 - Add property to compute the bounding box of `WsiAnnotations`

Pull Request - State: closed - Opened by jonasteuwen over 1 year ago
Labels: python

#131 - Come up with a way to use `SlideImage` as an input to the dataset

Issue - State: closed - Opened by jonasteuwen over 1 year ago - 1 comment
Labels: enhancement, Stale

#130 - dlup CLI: mask_colors argument missing & thumbnail and mask sizes not matching

Issue - State: closed - Opened by VanessaBotha over 1 year ago - 1 comment
Labels: bug, Stale

#129 - Allow setting of mpp, modernize typing

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#128 - Allow to overwrite mpp

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python, ci

#127 - Different tile size in the grid

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#126 - `SlideImage.read_region` fails because the box overflows the region in `PIL.Image.resize`

Issue - State: closed - Opened by YoniSchirris almost 2 years ago - 3 comments
Labels: bug

#125 - Different grids for TiledROIsSlideImageDataset

Issue - State: closed - Opened by manyids2 almost 2 years ago - 2 comments
Labels: enhancement, Stale

#124 - Feat: Add warning about `multiprocessing` context when using `TifffileImageWriter.from_tiles_iterator`

Issue - State: closed - Opened by YoniSchirris almost 2 years ago - 3 comments
Labels: enhancement, Stale

#123 - Allow mpp to differ by 1.5%

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#122 - Allow setting a default value for the mask

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#121 - Update shapely

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago - 1 comment
Labels: documentation, python, ci

#120 - Add number of workers as a parameter for tiffwriters.

Issue - State: closed - Opened by Tkootstra almost 2 years ago - 2 comments
Labels: enhancement, Stale

#119 - Remap labels differently

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#118 - Add py.typed

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago

#117 - Allow to overwrite mpp

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#116 - The conversion augmentation always returns an roi.

Issue - State: closed - Opened by AjeyPaiK almost 2 years ago - 1 comment
Labels: wontfix

#115 - Fix multiplier

Pull Request - State: closed - Opened by jonasteuwen almost 2 years ago
Labels: python

#114 - Bug in `ConvertAnnotationsToMask` transform

Issue - State: closed - Opened by AjeyPaiK almost 2 years ago - 1 comment
Labels: bug

#113 - points annotation conversion hotfix

Pull Request - State: closed - Opened by Tkootstra about 2 years ago
Labels: python

#112 - converting annotiations does not return point annotations

Issue - State: closed - Opened by Tkootstra about 2 years ago
Labels: bug

#111 - Cannot read some images from the TCGA dataset

Issue - State: closed - Opened by AjeyPaiK about 2 years ago - 1 comment
Labels: wontfix

#110 - AttributeError: module 'shapely' has no attribute 'affinity'

Issue - State: closed - Opened by TangTangFei about 2 years ago - 2 comments
Labels: bug

#109 - Extending functionality of `WsiAnnotations` and allow polygons as mask

Pull Request - State: closed - Opened by jonasteuwen about 2 years ago
Labels: documentation, python, ci

#108 - Tifffile Image backend makes a mistake while reading mpp values of images.

Issue - State: closed - Opened by AjeyPaiK about 2 years ago - 3 comments
Labels: bug

#107 - Fixed transformation bug

Pull Request - State: closed - Opened by Dafidofff about 2 years ago - 1 comment
Labels: python