NEFSC/READ-EDAB-neusAtlantis issues and pull requests

#228 - Updated Age Structure & Calibration

Pull Request - State: closed - Opened by jcaracappa1 9 months ago - 3 comments

#227 - 6665 rjg

Pull Request - State: closed - Opened by andybeet 10 months ago - 1 comment

#226 - add cloud calibration to 6536_age_process

Pull Request - State: closed - Opened by jcaracappa1 11 months ago

#225 - Add new analysis to manuscript branch

Pull Request - State: closed - Opened by jcaracappa1 about 1 year ago

#224 - v2.0.2 - Baseline calibration v6536

Pull Request - State: closed - Opened by jcaracappa1 about 1 year ago - 2 comments

#223 - Post processing overhaul

Pull Request - State: closed - Opened by jcaracappa1 about 1 year ago - 2 comments

#222 - Fishing sensitivity final

Pull Request - State: closed - Opened by jcaracappa1 about 1 year ago - 2 comments

#221 - updated shapefile

Pull Request - State: closed - Opened by andybeet about 1 year ago - 2 comments

#220 - Merge calibrated hindcast

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#219 - HER LOB SCA RED fixes

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 3 comments

#218 - BLF and RED fixes

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 5 comments

#217 - Dev updates into phyto_update

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#216 - Fishing sensitivity rand history

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#215 - Various Species adjustments

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 1 comment

#214 - testing of concepts behind catch randomization procedure

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#213 - Rjg group fixes 5 17 23

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#212 - Rjg group fixes 5 17 23

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#211 - Combined Changes to Groundfish, mammals, and apex predators

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 2 comments

#210 - Rjg fix exploding groups

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#209 - merge dev into phyto updates for testing

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#208 - Bring recent dev to v6665

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#207 - Add dev changes and flagrecruit 12

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#206 - Changes to fix MAK (and HER)

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 2 comments

#205 - V6665 comp

Pull Request - State: closed - Opened by andybeet over 1 year ago

#204 - Update to fix after updated catch and BH recruitment

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 3 comments

#203 - Add ZL restore to v6666

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#202 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#201 - Changes to ZG: pprey = 1/1000 for fish, 1/100 for NSH and OSH

Pull Request - State: closed - Opened by RGamble1 over 1 year ago

#200 - Rjg diet changes

Pull Request - State: closed - Opened by RGamble1 over 1 year ago

#199 - Rjg diet changes

Pull Request - State: closed - Opened by RGamble1 over 1 year ago

#198 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#197 - BH Recruit Scenarios

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 2 comments

#196 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#195 - Diet composition changes for WTF and PLA

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 1 comment

#194 - Changes made by Joe in BH_Recruit_Scenarios.r incorporated

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 1 comment

#193 - update catch data methods

Pull Request - State: closed - Opened by andybeet over 1 year ago - 3 comments

#192 - Atl batcher v2

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#191 - update batcher in branch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#190 - Reduce system biomass

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 3 comments

#189 - Physics update 2022

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 2 comments

#188 - Fishing sensitivity scenarios 3 creation

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#187 - New batcher functionality

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#186 - Update Fishing Sensitivity from Dev

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#185 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago

#184 - Minor fixes to get the program to work without tidyverse

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 2 comments

#183 - Fixed Clam Catch

Pull Request - State: closed - Opened by jcaracappa1 over 1 year ago - 3 comments

#182 - Atl batcher

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 4 comments

#181 - Keeps track of completed status in initialization file to start from …

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 4 comments

#180 - Atl batcher

Pull Request - State: closed - Opened by RGamble1 over 1 year ago - 2 comments

#179 - Incorporate post-processing fixes

Pull Request - State: closed - Opened by jcaracappa1 almost 2 years ago

#178 - add most recent post-processing changes to branch

Pull Request - State: closed - Opened by jcaracappa1 almost 2 years ago

#177 - ASMFC Species Reference Points

Pull Request - State: closed - Opened by jcaracappa1 almost 2 years ago - 1 comment

#176 - General Improvements to memory management and processing speed

Pull Request - State: closed - Opened by jcaracappa1 almost 2 years ago - 1 comment

#175 - All Groups Persist

Pull Request - State: closed - Opened by jcaracappa1 almost 2 years ago - 5 comments

#174 - Incremental Improvements to Misc Species

Pull Request - State: closed - Opened by jcaracappa1 about 2 years ago - 3 comments

#173 - GOO, HER, LOB, SCA persist

Pull Request - State: closed - Opened by jcaracappa1 about 2 years ago - 5 comments

#172 - Fix goo mak

Pull Request - State: closed - Opened by jcaracappa1 about 2 years ago - 5 comments

#171 - Rjg catch scaling

Pull Request - State: closed - Opened by RGamble1 about 2 years ago - 2 comments

#170 - Rjg catch scaling

Pull Request - State: closed - Opened by RGamble1 about 2 years ago - 2 comments

#169 - Adding the scale_catch.r script

Pull Request - State: closed - Opened by RGamble1 about 2 years ago - 2 comments

#168 - Edit Initial Age Structure

Pull Request - State: closed - Opened by jcaracappa1 about 2 years ago - 3 comments

#167 - make atlantis diagnostic figures error

Issue - State: open - Opened by andybeet about 2 years ago
Labels: bug

#166 - Initial Age Distribution

Pull Request - State: closed - Opened by jcaracappa1 about 2 years ago - 3 comments

#165 - Diet Audit & Adjustments

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 6 comments

#164 - Benthics into Diet Audit Runs

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#163 - Rjg dev sca lob

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 1 comment

#162 - Dev branch

Pull Request - State: closed - Opened by RGamble1 over 2 years ago

#161 - Broad Fixes to Age-Structured Groups

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#160 - Herring and Goosefish Persistence

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#159 - Coarse Corrections for predators and mortality

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#158 - New Invert Initial Conditions

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#157 - New Initial size-at-age, numbers, and temperature sensitivity

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#156 - New Initial Conditions and Temperature-dependent Growth

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 1 comment

#155 - NEUS V2.0.1

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#154 - GLORYS Extraction Changes

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 1 comment

#153 - Pupping recruit, COD, and STB adjustments

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#152 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 1 comment

#151 - Pupping Recruitment

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 5 comments

#150 - Code Cleanup

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#149 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#148 - 403 stocksmartdata

Pull Request - State: closed - Opened by andybeet over 2 years ago - 1 comment

#147 - Fixing Phytoplankton Accumulation

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#146 - Revert "Changes to Mackerel and FDF to fix age structure."

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#145 - Atlnts 369 emax. Assign emaz qs to atlantis

Pull Request - State: closed - Opened by andybeet over 2 years ago - 2 comments

#144 - Changes to Mackerel and FDF to fix age structure.

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 2 comments

#143 - No PS Sinking

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#142 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#141 - High Priority Group Tuning

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#140 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#139 - Goosefish weirdness test

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 2 comments

#138 - Ryan Morse's Initial Condition Worksheets

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 1 comment

#137 - Goosefish weirdness test

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 1 comment

#136 - Various Group Calibration

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#135 - Dev branch

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago

#134 - biomass data updates

Pull Request - State: closed - Opened by andybeet over 2 years ago - 1 comment

#133 - BH Persistence

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 3 comments

#132 - Preliminary Recruitment Calibration & Catch Spinup

Pull Request - State: closed - Opened by jcaracappa1 over 2 years ago - 2 comments

#131 - Herring changes

Pull Request - State: closed - Opened by RGamble1 over 2 years ago - 2 comments

#130 - Changes to Herring which allowed persistence

Pull Request - State: closed - Opened by RGamble1 over 2 years ago

#41 - github project

Issue - State: closed - Opened by slarge over 4 years ago

GitHub / NEFSC/READ-EDAB-neusAtlantis issues and pull requests