NDAR/nda-tools issues and pull requests

#102 - Remove sys.exit from version check...

Pull Request - State: closed - Opened by jrussell9000 3 months ago

#101 - Allow configuration of the NDA_ORGINIZATION_ROOT_FOLDER

Issue - State: open - Opened by ericearl 3 months ago - 7 comments

#100 - why does os.rename only sometimes fail on s3fs?

Issue - State: open - Opened by dmd 4 months ago - 9 comments

#99 - Small typo in Download Progress Report

Issue - State: open - Opened by psadil 5 months ago

#98 - How can I unzip downloaded data on S3?

Issue - State: open - Opened by AliAzG 5 months ago

#97 - Download shortage

Issue - State: open - Opened by Wzm111571 6 months ago - 1 comment

#96 - Remove sys.exit from version check.

Pull Request - State: closed - Opened by jrussell9000 6 months ago

#95 - Error creating csv file for validation request

Issue - State: open - Opened by nmuncy 6 months ago - 1 comment

#94 - downloadcmd fails during large concurrent downloads

Issue - State: open - Opened by ericearl 6 months ago - 1 comment

#93 - File "NA" not found

Issue - State: closed - Opened by mjschneider42 7 months ago - 2 comments

#92 - T1rho Spin-lock image Not a Recognized Scan Type

Issue - State: open - Opened by JBarsotti 7 months ago - 3 comments

#91 - downloadcmd 403 error

Issue - State: closed - Opened by fullcream9 7 months ago - 2 comments

#89 - write to closed file

Issue - State: open - Opened by dmd 10 months ago - 5 comments

#88 - downloadcmd renames files from .nii.gz to .nii_N.gz

Issue - State: open - Opened by dmd 10 months ago - 8 comments

#87 - An unexpected error was encountered and the program could not continue. Error message from service was: {'timestamp': '2023-12-04T05:16:24.481+00:00', 'status': 409, 'error': 'Conflict', 'path': '/api/packaging-ws/113460/create-package-metadata-file'}

Issue - State: closed - Opened by racheldaydayup 10 months ago - 1 comment

#86 - Number of files in package is 0

Issue - State: closed - Opened by Becmamba 10 months ago - 2 comments

#85 - vtcmd dialogue displays incorrect path to warning output file

Issue - State: closed - Opened by raygon 11 months ago - 1 comment

#84 - Parallel starting of downloadcmd causes file collision

Issue - State: closed - Opened by ericearl 11 months ago - 9 comments

#83 - SSLCertVerificationError

Issue - State: closed - Opened by jmschabdach 11 months ago - 2 comments

#82 - S3-only download can't get metadata

Issue - State: closed - Opened by dmd 11 months ago - 9 comments

#81 - unnecessary sleeps in Download.py

Issue - State: closed - Opened by dmd 11 months ago - 5 comments

#80 - report actual location of settings.cfg used

Pull Request - State: closed - Opened by dmd 11 months ago - 1 comment

#79 - ClientConfiguration misreports location of settings.cfg

Issue - State: closed - Opened by dmd 11 months ago - 4 comments

#78 - passing authentication details to downloadcmd non-interactively

Issue - State: closed - Opened by dmd 11 months ago - 5 comments

#77 - Why nda-tools throwing error on existing package?

Issue - State: closed - Opened by spurani 12 months ago - 4 comments

#76 - Unexpected Error: None when trying to submit

Issue - State: closed - Opened by jodahoney about 1 year ago - 1 comment

#75 - Downloadcmd issues

Issue - State: closed - Opened by ZhenyaoYe about 1 year ago - 2 comments

#74 - vtcmd hangs after returning a "UnicodeEncodeError"

Issue - State: closed - Opened by holland-reece about 1 year ago - 2 comments

#73 - 404 Client Error:

Issue - State: closed - Opened by roohy466 about 1 year ago - 9 comments

#72 - codespell: add config and action to codespell the code to avoid known typos

Pull Request - State: open - Opened by yarikoptic about 1 year ago

#71 - Note default values of -wt and -bc in help message

Pull Request - State: open - Opened by tashrifbillah about 1 year ago

#70 - pandas.errors.ParserError: Error tokenizing data.

Issue - State: closed - Opened by GerardYu about 1 year ago - 4 comments

#69 - Hook up --force flag with associated files search

Pull Request - State: closed - Opened by tashrifbillah about 1 year ago - 1 comment

#68 - vtcmd infinite hang

Issue - State: closed - Opened by markjbaker about 1 year ago - 1 comment

#67 - S3 download is broken

Issue - State: closed - Opened by liningpan over 1 year ago - 2 comments

#66 - upgraded v0.2.25 --verify no longer works

Issue - State: open - Opened by aporter1350 over 1 year ago - 1 comment

#65 - Version out of date

Issue - State: closed - Opened by cjl2007 over 1 year ago - 3 comments

#64 - Improve AWS policy

Pull Request - State: open - Opened by liningpan over 1 year ago

#63 - Command 'vtcmd' not found

Issue - State: closed - Opened by gbook over 1 year ago - 5 comments

#62 - command should be pip3 install nda-tools

Issue - State: closed - Opened by RyanZurrin over 1 year ago - 1 comment

#61 - UnboundLocalError: local variable 'credentials' referenced before assignment

Issue - State: open - Opened by juanprietob over 1 year ago - 2 comments

#60 - Unclear Error when non-existent package requested

Issue - State: closed - Opened by pvandyken over 1 year ago - 3 comments

#59 - KeyError from mis-parsed URI during Submission

Issue - State: closed - Opened by jacob-lee over 1 year ago - 8 comments

#58 - downloadcmd not working properly, generates several errors when trying to log in

Issue - State: closed - Opened by rjacksonrqr almost 2 years ago - 3 comments

#57 - Download Package Bug?

Issue - State: closed - Opened by JBarsotti almost 2 years ago - 6 comments

#56 - Is authentication required for validation?

Issue - State: closed - Opened by liningpan almost 2 years ago - 7 comments

#55 - Trouble downloading file

Issue - State: closed - Opened by coreyjr2 almost 2 years ago - 5 comments

#54 - Stop forcing us to update

Issue - State: open - Opened by andersonwinkler almost 2 years ago - 7 comments

#53 - Validation does not work without -b flag

Issue - State: closed - Opened by tashrifbillah almost 2 years ago - 4 comments

#52 - Update Download.py

Pull Request - State: open - Opened by maloneytc almost 2 years ago

#51 - Invalid password error

Issue - State: closed - Opened by spurani almost 2 years ago - 5 comments

#50 - 504 Server Error: Gateway Time-out when downloading data from large packages

Issue - State: closed - Opened by perronea almost 2 years ago - 6 comments

#49 - store log files in specific directory

Issue - State: open - Opened by aporter1350 almost 2 years ago - 3 comments

#48 - File Fails to Pass Validation Because of GUIDs

Issue - State: closed - Opened by JBarsotti about 2 years ago

#47 - `KeyError : 'content-type' error`, even when package ID was provided through `-dp`

Issue - State: closed - Opened by dyhan316 about 2 years ago - 2 comments

#46 - using `downloadcmd` doesn't work

Issue - State: closed - Opened by dyhan316 about 2 years ago

#45 - KeyError

Issue - State: closed - Opened by GerardYu about 2 years ago - 2 comments

#44 - ABCD MRI data downloading issue

Issue - State: closed - Opened by fullcream9 about 2 years ago - 1 comment

#43 - If my file upload was disrupted, can I cancel it, or delete the process?

Issue - State: closed - Opened by jawaltz over 2 years ago - 1 comment

#42 - Where does vtcmd install to?

Issue - State: closed - Opened by jawaltz over 2 years ago - 2 comments

#41 - Validating files frozen, no errors or updates

Issue - State: closed - Opened by evansorenson over 2 years ago - 1 comment

#40 - UTF encoding error in api_request

Issue - State: closed - Opened by clin045 over 2 years ago - 2 comments

#39 - `-s3` is useless

Issue - State: closed - Opened by kimsin98 almost 3 years ago - 1 comment
Labels: bug

#38 - Not able to use the downloadcmd

Issue - State: closed - Opened by kuhlaid almost 3 years ago - 2 comments

#37 - Adding a Text File to Uploads

Issue - State: closed - Opened by JBarsotti about 3 years ago - 6 comments

#36 - Subject_01 File Submission

Issue - State: closed - Opened by JBarsotti about 3 years ago - 4 comments

#35 - NDA Downloads/File Deletions

Issue - State: closed - Opened by JBarsotti about 3 years ago - 4 comments

#34 - Submission of data with custom scope fails with "Unrecognized column name"

Issue - State: closed - Opened by jacob-lee about 3 years ago - 2 comments

#33 - Parallel Submission?

Issue - State: closed - Opened by JBarsotti about 3 years ago - 2 comments

#32 - Question About Data Types

Issue - State: closed - Opened by JBarsotti about 3 years ago - 5 comments

#31 - Fix bug in which scope argument is treated as list instead of string

Pull Request - State: closed - Opened by jacob-lee about 3 years ago - 2 comments

#30 - fix resume bug

Pull Request - State: closed - Opened by Roxbili over 3 years ago

#29 - format of S3_path_list

Issue - State: closed - Opened by petralenzini over 3 years ago - 2 comments

#28 - must use a real method to handle secrets

Issue - State: closed - Opened by GodloveD over 3 years ago - 3 comments

#27 - KeyError when parsing server response upon validation error

Issue - State: open - Opened by jacob-lee almost 4 years ago

#26 - RF: since argument could be not just a list but a package id etc, renamed into items

Pull Request - State: open - Opened by yarikoptic almost 4 years ago

#25 - downloadcmd <packageid> fails with "list index out of range" and exits without error code

Issue - State: open - Opened by yarikoptic almost 4 years ago - 2 comments

#24 - Error with reading password when it has a % character in it.

Issue - State: open - Opened by bburnett66 over 4 years ago - 1 comment

#23 - Import readline module for better text entry

Issue - State: open - Opened by jbteves over 4 years ago

#22 - Question: GUID generation

Issue - State: closed - Opened by bloyl over 4 years ago - 2 comments

#21 - Minor fixes, see individual commits for the explanation

Pull Request - State: open - Opened by yarikoptic about 5 years ago

#20 - nda-tools should adjust permissions to prevent passwd leakage from ~/.NDATools/settings.cfg

Issue - State: closed - Opened by yarikoptic about 5 years ago - 2 comments

#19 - git tag the releases

Issue - State: open - Opened by yarikoptic about 5 years ago - 4 comments

#18 - error after upload has completed

Issue - State: closed - Opened by PatrickJReed about 5 years ago - 1 comment

#17 - Add test(s)

Issue - State: open - Opened by yarikoptic over 5 years ago

#16 - Question: clarify incremental submissions procedure for neuroimaging data

Issue - State: open - Opened by yarikoptic over 5 years ago - 2 comments

#15 - support full paths in the file list .csv

Issue - State: open - Opened by yarikoptic over 5 years ago

#14 - having full local paths in .csv for data files still requires some location to be entered

Issue - State: open - Opened by yarikoptic over 5 years ago - 4 comments

#13 - incorrectly handles error messages without columnName field

Issue - State: open - Opened by yarikoptic over 5 years ago - 2 comments

#12 - vtcmd fails if log directory doesn't exist

Issue - State: closed - Opened by kdaily over 5 years ago - 4 comments

#11 - Version flag to vtcmd

Issue - State: open - Opened by ericearl over 5 years ago

#10 - update example and usage info for -dp/--package flag

Pull Request - State: open - Opened by agt24 over 5 years ago - 1 comment

#9 - Seems to require python 3?

Issue - State: closed - Opened by alexlicohen over 5 years ago - 1 comment

#8 - fixed typos in the download section (extra dashes)

Pull Request - State: closed - Opened by alexlicohen over 5 years ago

#7 - Rename cmdline tools with consistent (and unique) prefix

Issue - State: open - Opened by yarikoptic over 5 years ago - 1 comment

#6 - BF: remove executable bit from non-scripts and added shebang to setup.py

Pull Request - State: closed - Opened by yarikoptic over 5 years ago

#5 - Check for symlinks and option to force derefencing

Issue - State: closed - Opened by Shotgunosine over 5 years ago - 3 comments

#4 - Ccf customizations

Pull Request - State: closed - Opened by obenshaindw over 5 years ago

#3 - Vtcmd feature request: Add option to hide progress monitor

Issue - State: closed - Opened by hodgem over 5 years ago - 1 comment
Labels: enhancement

#2 - Error with vtcmd --warning

Issue - State: closed - Opened by sean-cho over 5 years ago - 2 comments
Labels: bug

GitHub / NDAR/nda-tools issues and pull requests