Ecosyste.ms: Issues
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GitHub / NBISweden/GUESSmyLT issues and pull requests
#24 - fix miss-handling check of the samtools versions to prepare the correct command
Pull Request -
State: closed - Opened by Juke34 almost 2 years ago
#23 - cannot install with conda on Ubuntu 20.04 nor 22.04
Issue -
State: open - Opened by julienlag almost 2 years ago
- 2 comments
#22 - Samtools version check for sort command fails, tries to use `-f`
Issue -
State: closed - Opened by Shellfishgene almost 3 years ago
- 2 comments
#21 - Singularity container does not work due to read only filesystem
Issue -
State: open - Opened by Shellfishgene almost 3 years ago
- 1 comment
#20 - No match found betwwen sequence id from the bam file and the reference file
Issue -
State: closed - Opened by papelypluma almost 3 years ago
- 10 comments
#19 - Installed BUSCO is detected to be missing
Issue -
State: open - Opened by yifangt almost 3 years ago
- 3 comments
#18 - hmmsearch Parse failed ...
Issue -
State: closed - Opened by papelypluma about 3 years ago
- 8 comments
#17 - error
Issue -
State: closed - Opened by liaguiro over 3 years ago
- 12 comments
#16 - Error. No genes could be found in --annotation
Issue -
State: closed - Opened by LehmannN over 4 years ago
- 4 comments
#15 - result interpretation
Issue -
State: closed - Opened by Homap almost 5 years ago
- 3 comments
#14 - Error in bowtie2_index
Issue -
State: closed - Opened by Homap almost 5 years ago
- 7 comments
#13 - Provide a docker container
Issue -
State: closed - Opened by jpfeil almost 5 years ago
- 1 comment
#12 - Deal with different samtools version
Issue -
State: closed - Opened by Juke34 over 5 years ago
#11 - cannot run with only fastq file
Issue -
State: closed - Opened by mistrm82 over 5 years ago
- 2 comments
#10 - error with using the GUESSmyLT.py
Issue -
State: closed - Opened by mistrm82 over 5 years ago
- 5 comments
#9 - providing way to give index of the bam file
Issue -
State: open - Opened by Juke34 over 5 years ago
Labels: enhancement
#8 - Provide mean distance between paired reads
Issue -
State: open - Opened by Juke34 over 5 years ago
#7 - find a way to call run_BUSCO.py instead of run_busco when needed
Issue -
State: closed - Opened by Juke34 over 5 years ago
- 1 comment
#6 - adapt the samtools sort command to work with ancient version of bowtie
Issue -
State: closed - Opened by Juke34 over 5 years ago
- 1 comment
#5 - Optimize BUSCO for transcriptome reference
Issue -
State: open - Opened by Juke34 over 5 years ago
Labels: enhancement
#4 - Logging of last step, Inference
Issue -
State: open - Opened by Juke34 over 5 years ago
Labels: enhancement
#3 - Improve how reads are selected during the Subsampling
Issue -
State: open - Opened by Juke34 over 5 years ago
Labels: enhancement
#2 - Handling external annotation file (gff)
Issue -
State: closed - Opened by Juke34 over 5 years ago
Labels: enhancement
#1 - Handling of pre-mapped reads (bam file)
Issue -
State: closed - Opened by Juke34 over 5 years ago
Labels: enhancement